Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0007818

Physical Location & Seq

Genomic Coordinates Forward (+)

31948349 .. 31949155

Gene Structure 807 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0302500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGCTGATCAGACTACTGTGGATAATGAGGTCCCCTTCGAGGATGAAGGAATTATTGAGGCAATGTCGGTCAATTTTGAGAATTGTGTCGACATGCTTGATCTTGAACATGGTATTGACTTGGTGGGTACCCTTACTGCTGGTGAAGAGCCCGGCTTGGGAGGCATCAAAGCTGCTCTCATGGGCATCTGGAAAACTCTTGGCCAGATTCGCATAATCAGGGTCAAGAAAAATACGTACAGCCTTACAGTAGGATCTGAGAAACTAGCTGATCGGCTACTGGAGGAGAGCCCATGGAACGTAAAAGGCTACTGTTTTACTGTGAGACACTGGCCACCACACCATTCTATTGATGATCTCGTAACTCACCGAGCCATCTTCTGGATCCAAGCCCATGGAGTACCAAAAGACCAGATCACTGCCAATAATGCCCGGAAGCTGGGGAATATCCTGGGGGCTGTAGTCGATGTGGAGGATCCCCGAACTGCTGGGAATAGGGGTTTTCTGAGATTGAGAGTTGACTTCGATACCAGGAAACCTCTGGCAACCTTCATTCAGCTGCCACGGCCAAATGCACCCGCAACTAAGGTGAAAATCAAATATGAGAATCTTAAGTGTTTCTGCTTCAATTGTGGCAGATTGGGGCATATGAACAGCTCCTGCAGATTTCAAAAGCACCCAATCCTCGTCAAGATGGGTGTAGTCTATGACCTCTCACTGGTGGCTGATCCTCCGATGAAACCGGTATTCACACAAAACACTTATCCGTTGGAGTTCCCCTACGCACCGGTGACCGGAATTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0006139 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009295 GO:0009314 GO:0009408 GO:0009416 GO:0009507 GO:0009508 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009657 GO:0009658 GO:0009889 GO:0009941 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016020 GO:0016043 GO:0016070 GO:0016853 GO:0016860 GO:0016864 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032774 GO:0034357 GO:0034641 GO:0034645 GO:0034654 GO:0042644 GO:0042646 GO:0042651 GO:0042793 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055035 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:0140096 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PG_binding_1

Protein Analysis

268

Amino Acids

30.0

Weight (kDa)

7.08

Isoelectric Point (pI)

24.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4283	PF14111	41 - 116	1.2e-09	Domain of unknown function (DUF4283)
zf-CCHC_4	PF14392	175 - 222	8.3e-10	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13670 AT4G13670 AT4G13670 AT4G13670
fragaria_vesca	FvH4_4g00470 FvH4_4g00470
malus_domestica	MD04G1005000.v1.1
prunus_persica	Prupe.1G004900_v2.0.a1 Prupe.3G076100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0385901
rosa_laevigata	RLG00000010204
rosa_multiflora	Rmu_co7989456.1_g000001 Rmu_sc0007400.1_g000001 Rmu_sc0008728.1_g000006
rosa_roxburghii	Rroxscaffold_5G00333490
rosa_rugosa	Rorug03G0302300 Rorug03G0302400 Rorug03G0302500
rosa_samantha	Rh4AG007100 Rh4BG004700 Rh4BG004800 Rh4CG007700 Rh4DG006700
rosa_wichuraiana	Rw4G000340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	128
AccB1I	GGYRCC	1 cut(s)	128
AccB7I	CCANNNNNTGG	1 cut(s)	381
AccI	GTMKAC	1 cut(s)	90
AciI	CCGC	1 cut(s)	579
AclWI	GGATC	6 cut(s)	262, 379, 392, 470, 483, 722
AcoI	YGGCCR	3 cut(s)	202, 332, 566
AcsI	RAATTY	1 cut(s)	798
AfaI	GTAC	3 cut(s)	130, 239, 402
AfiI	CCNNNNNNNGG	6 cut(s)	40, 158, 381, 439, 718, 794
AflII	CTTAAG	1 cut(s)	611
AgeI	ACCGGT	2 cut(s)	742, 787
AgsI	TTSAA	3 cut(s)	107, 628, 671
AjnI	CCWGG	2 cut(s)	450, 530
AluBI	AGCT	5 cut(s)	173, 269, 439, 559, 657
AluI	AGCT	5 cut(s)	173, 269, 439, 559, 657
Alw26I	GTCTC	1 cut(s)	319
AlwI	GGATC	6 cut(s)	262, 379, 392, 470, 483, 722
AlwNI	CAGNNNCTG	1 cut(s)	660
AoxI	GGCC	3 cut(s)	202, 332, 566
ApeKI	GCWGC	2 cut(s)	173, 559
ApoI	RAATTY	1 cut(s)	798
AsiGI	ACCGGT	2 cut(s)	742, 787
Asp718I	GGTACC	1 cut(s)	128
AspS9I	GGNCC	1 cut(s)	31
AsuC2I	CCSGG	2 cut(s)	153, 433
AsuHPI	GGTGA	4 cut(s)	155, 359, 601, 802
AvaII	GGWCC	1 cut(s)	31
BalI	TGGCCA	2 cut(s)	204, 334
BamHI	GGATCC	2 cut(s)	384, 475
BanI	GGYRCC	1 cut(s)	128
BanII	GRGCYC	2 cut(s)	153, 293
BbvI	GCAGC	2 cut(s)	160, 546
BccI	CCATC	2 cut(s)	383, 688
BceAI	ACGGC	1 cut(s)	581
BciT130I	CCWGG	2 cut(s)	452, 532
BclI	TGATCA	1 cut(s)	7
BcnI	CCSGG	2 cut(s)	153, 433
BcoDI	GTCTC	1 cut(s)	319
BfaI	CTAG	2 cut(s)	266, 805
BfmI	CTRYAG	2 cut(s)	459, 661
BfrI	CTTAAG	1 cut(s)	611
BisI	GCNGC	2 cut(s)	174, 560
BlsI	GCNGC	2 cut(s)	175, 561
Bme1390I	CCNGG	4 cut(s)	153, 433, 452, 532
Bme18I	GGWCC	1 cut(s)	31
BmgT120I	GGNCC	1 cut(s)	31
BmiI	GGNNCC	4 cut(s)	33, 130, 386, 477
BmrFI	CCNGG	4 cut(s)	153, 433, 452, 532
BmsI	GCATC	2 cut(s)	174, 195
BpmI	CTGGAG	1 cut(s)	302
BpuMI	CCSGG	2 cut(s)	153, 433
BsaAI	YACGTR	1 cut(s)	237
BsaJI	CCNNGG	4 cut(s)	293, 394, 451, 563
BsaWI	WCCGGW	3 cut(s)	742, 787, 794
Bsc4I	CCNNNNNNNGG	6 cut(s)	40, 158, 381, 439, 718, 794
Bse118I	RCCGGY	2 cut(s)	742, 787
Bse1I	ACTGG	3 cut(s)	285, 335, 723
Bse3DI	GCAATG	1 cut(s)	69
BseBI	CCWGG	2 cut(s)	452, 532
BseDI	CCNNGG	4 cut(s)	293, 394, 451, 563
BseGI	GGATG	1 cut(s)	49
BseLI	CCNNNNNNNGG	6 cut(s)	40, 158, 381, 439, 718, 794
BseMI	GCAATG	1 cut(s)	69
BseMII	CTCAG	2 cut(s)	249, 497
BseNI	ACTGG	3 cut(s)	285, 335, 723
BseRI	GAGGAG	1 cut(s)	299
BseXI	GCAGC	2 cut(s)	160, 546
BseYI	CCCAGC	2 cut(s)	439, 488
BshFI	GGCC	3 cut(s)	204, 334, 568
BshNI	GGYRCC	1 cut(s)	128
BshTI	ACCGGT	2 cut(s)	742, 787
BsiSI	CCGG	5 cut(s)	153, 433, 743, 788, 795
BslFI	GGGAC	1 cut(s)	17
BslI	CCNNNNNNNGG	6 cut(s)	40, 158, 381, 439, 718, 794
BsmAI	GTCTC	1 cut(s)	319
BsmFI	GGGAC	1 cut(s)	17
BsnI	GGCC	3 cut(s)	204, 334, 568
Bsp1286I	GDGCHC	2 cut(s)	153, 293
Bsp143I	GATC	9 cut(s)	7, 100, 254, 271, 355, 384, 414, 475, 727
Bsp19I	CCATGG	2 cut(s)	293, 394
BspACI	CCGC	1 cut(s)	579
BspANI	GGCC	3 cut(s)	204, 334, 568
BspCNI	CTCAG	2 cut(s)	250, 498
BspLI	GGNNCC	4 cut(s)	33, 130, 386, 477
BspMAI	CTGCAG	1 cut(s)	665
BspPI	GGATC	6 cut(s)	262, 379, 392, 470, 483, 722
BspQI	GCTCTTC	1 cut(s)	141
BspT107I	GGYRCC	1 cut(s)	128
BspTI	CTTAAG	1 cut(s)	611
BsrDI	GCAATG	1 cut(s)	69
BsrFI	RCCGGY	2 cut(s)	742, 787
BsrI	ACTGG	3 cut(s)	285, 335, 723
BssAI	RCCGGY	2 cut(s)	742, 787
BssECI	CCNNGG	4 cut(s)	293, 394, 451, 563
BssMI	GATC	9 cut(s)	7, 100, 254, 271, 355, 384, 414, 475, 727
BssT1I	CCWWGG	2 cut(s)	293, 394
Bst2UI	CCWGG	2 cut(s)	452, 532
Bst4CI	ACNGT	4 cut(s)	19, 250, 314, 322
Bst6I	CTCTTC	1 cut(s)	141
BstAFI	CTTAAG	1 cut(s)	611
BstBAI	YACGTR	1 cut(s)	237
BstDEI	CTNAG	3 cut(s)	258, 506, 585
BstDSI	CCRYGG	3 cut(s)	293, 394, 563
BstEII	GGTNACC	1 cut(s)	790
BstF5I	GGATG	1 cut(s)	49
BstKTI	GATC	9 cut(s)	10, 103, 257, 274, 358, 387, 417, 478, 730
BstMAI	GTCTC	1 cut(s)	319
BstMBI	GATC	9 cut(s)	7, 100, 254, 271, 355, 384, 414, 475, 727
BstMWI	GCNNNNNNNGC	4 cut(s)	162, 210, 428, 565
BstNI	CCWGG	2 cut(s)	452, 532
BstNSI	RCATGY	1 cut(s)	97
BstPI	GGTNACC	1 cut(s)	790
BstSCI	CCNGG	4 cut(s)	151, 431, 450, 530
BstSFI	CTRYAG	2 cut(s)	459, 661
BstSNI	TACGTA	1 cut(s)	237
BstV1I	GCAGC	2 cut(s)	160, 546
BstX2I	RGATCY	3 cut(s)	254, 384, 475
BstXI	CCANNNNNNTGG	1 cut(s)	395
BstYI	RGATCY	3 cut(s)	254, 384, 475
BsuRI	GGCC	3 cut(s)	204, 334, 568
BtgI	CCRYGG	3 cut(s)	293, 394, 563
BtsCI	GGATG	1 cut(s)	49
BtsI	GCAGTG	1 cut(s)	417
BtsIMutI	CAGTG	3 cut(s)	328, 417, 716
CaiI	CAGNNNCTG	1 cut(s)	660
Cfr10I	RCCGGY	2 cut(s)	742, 787
Cfr13I	GGNCC	1 cut(s)	31
Csp6I	GTAC	3 cut(s)	129, 238, 401
CspAI	ACCGGT	2 cut(s)	742, 787
CviAII	CATG	5 cut(s)	94, 110, 181, 294, 395
CviQI	GTAC	3 cut(s)	129, 238, 401
DdeI	CTNAG	3 cut(s)	258, 506, 585
DpnI	GATC	9 cut(s)	9, 102, 256, 273, 357, 386, 416, 477, 729
DpnII	GATC	9 cut(s)	7, 100, 254, 271, 355, 384, 414, 475, 727
EaeI	YGGCCR	3 cut(s)	202, 332, 566
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
Eco105I	TACGTA	1 cut(s)	237
Eco130I	CCWWGG	2 cut(s)	293, 394
Eco24I	GRGCYC	2 cut(s)	153, 293
Eco47I	GGWCC	1 cut(s)	31
Eco91I	GGTNACC	1 cut(s)	790
EcoO109I	RGGNCCY	1 cut(s)	31
EcoO65I	GGTNACC	1 cut(s)	790
EcoRII	CCWGG	2 cut(s)	450, 530
EcoT14I	CCWWGG	2 cut(s)	293, 394
EcoT38I	GRGCYC	2 cut(s)	153, 293
ErhI	CCWWGG	2 cut(s)	293, 394
FaeI	CATG	5 cut(s)	97, 113, 184, 297, 398
FaqI	GGGAC	1 cut(s)	17
FatI	CATG	5 cut(s)	93, 109, 180, 293, 394
FauI	CCCGC	1 cut(s)	586
FauNDI	CATATG	1 cut(s)	648
FbaI	TGATCA	1 cut(s)	7
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	2 cut(s)	174, 560
FokI	GGATG	1 cut(s)	56
FriOI	GRGCYC	2 cut(s)	153, 293
Fsp4HI	GCNGC	2 cut(s)	174, 560
FspBI	CTAG	2 cut(s)	266, 805
GluI	GCNGC	2 cut(s)	174, 560
GsaI	CCCAGC	2 cut(s)	443, 492
GsuI	CTGGAG	1 cut(s)	302
HaeIII	GGCC	3 cut(s)	204, 334, 568
HapII	CCGG	5 cut(s)	153, 433, 743, 788, 795
Hin1II	CATG	5 cut(s)	97, 113, 184, 297, 398
HincII	GTYRAC	2 cut(s)	91, 520
HindII	GTYRAC	2 cut(s)	91, 520
HinfI	GANTC	2 cut(s)	208, 607
HpaII	CCGG	5 cut(s)	153, 433, 743, 788, 795
HphI	GGTGA	4 cut(s)	155, 359, 601, 802
Hpy166II	GTNNAC	2 cut(s)	91, 520
Hpy188I	TCNGA	4 cut(s)	12, 259, 507, 735
Hpy188III	TCNNGA	5 cut(s)	104, 190, 226, 382, 691
Hpy8I	GTNNAC	2 cut(s)	91, 520
HpyAV	CCTTC	3 cut(s)	41, 46, 559
HpyCH4III	ACNGT	4 cut(s)	19, 250, 314, 322
HpyCH4IV	ACGT	2 cut(s)	236, 300
HpyCH4V	TGCA	2 cut(s)	575, 663
HpyF10VI	GCNNNNNNNGC	4 cut(s)	162, 210, 428, 565
HpyF3I	CTNAG	3 cut(s)	258, 506, 585
HpySE526I	ACGT	2 cut(s)	236, 300
Hsp92II	CATG	5 cut(s)	97, 113, 184, 297, 398
KpnI	GGTACC	1 cut(s)	132
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	9 cut(s)	7, 100, 254, 271, 355, 384, 414, 475, 727
LguI	GCTCTTC	1 cut(s)	141
LmnI	GCTCC	1 cut(s)	662
Lsp1109I	GCAGC	2 cut(s)	160, 546
LweI	GCATC	2 cut(s)	174, 195
MaeI	CTAG	2 cut(s)	266, 805
MaeII	ACGT	2 cut(s)	236, 300
MaeIII	GTNAC	2 cut(s)	361, 790
MalI	GATC	9 cut(s)	9, 102, 256, 273, 357, 386, 416, 477, 729
MboI	GATC	9 cut(s)	7, 100, 254, 271, 355, 384, 414, 475, 727
MboII	GAAGA	2 cut(s)	158, 370
MfeI	CAATTG	1 cut(s)	628
MflI	RGATCY	3 cut(s)	254, 384, 475
MhlI	GDGCHC	2 cut(s)	153, 293
MlsI	TGGCCA	2 cut(s)	204, 334
MluCI	AATT	5 cut(s)	51, 73, 82, 628, 798
MluNI	TGGCCA	2 cut(s)	204, 334
MmeI	TCCRAC	1 cut(s)	750
Mox20I	TGGCCA	2 cut(s)	204, 334
MscI	TGGCCA	2 cut(s)	204, 334
MseI	TTAA	1 cut(s)	612
Msp20I	TGGCCA	2 cut(s)	204, 334
MspA1I	CMGCKG	1 cut(s)	559
MspCI	CTTAAG	1 cut(s)	611
MspI	CCGG	5 cut(s)	153, 433, 743, 788, 795
MspR9I	CCNGG	4 cut(s)	153, 433, 452, 532
MunI	CAATTG	1 cut(s)	628
MvaI	CCWGG	2 cut(s)	452, 532
MwoI	GCNNNNNNNGC	4 cut(s)	162, 210, 428, 565
NciI	CCSGG	2 cut(s)	153, 433
NcoI	CCATGG	2 cut(s)	293, 394
NdeI	CATATG	1 cut(s)	648
NdeII	GATC	9 cut(s)	7, 100, 254, 271, 355, 384, 414, 475, 727
NlaIII	CATG	5 cut(s)	97, 113, 184, 297, 398
NlaIV	GGNNCC	4 cut(s)	33, 130, 386, 477
NmuCI	GTSAC	1 cut(s)	790
NspI	RCATGY	1 cut(s)	97
PciSI	GCTCTTC	1 cut(s)	141
PfeI	GAWTC	2 cut(s)	208, 607
PflMI	CCANNNNNTGG	1 cut(s)	381
PinAI	ACCGGT	2 cut(s)	742, 787
PkrI	GCNGC	2 cut(s)	175, 561
Ppu21I	YACGTR	1 cut(s)	237
PpuMI	RGGWCCY	1 cut(s)	31
Psp5II	RGGWCCY	1 cut(s)	31
Psp6I	CCWGG	2 cut(s)	450, 530
PspEI	GGTNACC	1 cut(s)	790
PspFI	CCCAGC	2 cut(s)	439, 488
PspGI	CCWGG	2 cut(s)	450, 530
PspN4I	GGNNCC	4 cut(s)	33, 130, 386, 477
PspPI	GGNCC	1 cut(s)	31
PspPPI	RGGWCCY	1 cut(s)	31
PstI	CTGCAG	1 cut(s)	665
PstNI	CAGNNNCTG	1 cut(s)	660
PsuI	RGATCY	3 cut(s)	254, 384, 475
PvuII	CAGCTG	1 cut(s)	559
RsaI	GTAC	3 cut(s)	130, 239, 402
RsaNI	GTAC	3 cut(s)	129, 238, 401
SalI	GTCGAC	1 cut(s)	89
SapI	GCTCTTC	1 cut(s)	141
SaqAI	TTAA	1 cut(s)	612
SatI	GCNGC	2 cut(s)	174, 560
Sau3AI	GATC	9 cut(s)	7, 100, 254, 271, 355, 384, 414, 475, 727
Sau96I	GGNCC	1 cut(s)	31
ScrFI	CCNGG	4 cut(s)	153, 433, 452, 532
SduI	GDGCHC	2 cut(s)	153, 293
SfaNI	GCATC	2 cut(s)	174, 195
SfcI	CTRYAG	2 cut(s)	459, 661
SgrAI	CRCCGGYG	1 cut(s)	787
SinI	GGWCC	1 cut(s)	31
SmlI	CTYRAG	1 cut(s)	611
SmoI	CTYRAG	1 cut(s)	611
SnaBI	TACGTA	1 cut(s)	237
Sse9I	AATT	5 cut(s)	51, 73, 82, 628, 798
SsiI	CCGC	1 cut(s)	579
SspMI	CTAG	2 cut(s)	266, 805
StyD4I	CCNGG	4 cut(s)	151, 431, 450, 530
StyI	CCWWGG	2 cut(s)	293, 394
TaaI	ACNGT	4 cut(s)	19, 250, 314, 322
TaiI	ACGT	2 cut(s)	239, 303
TaqI	TCGA	4 cut(s)	39, 90, 465, 525
TaqII	GACCGA	1 cut(s)	58
TasI	AATT	5 cut(s)	51, 73, 82, 628, 798
TfiI	GAWTC	2 cut(s)	208, 607
Tru1I	TTAA	1 cut(s)	612
Tru9I	TTAA	1 cut(s)	612
TscAI	CASTG	3 cut(s)	335, 424, 723
TseFI	GTSAC	1 cut(s)	790
TseI	GCWGC	2 cut(s)	173, 559
Tsp45I	GTSAC	1 cut(s)	790
TspDTI	ATGAA	4 cut(s)	60, 541, 665, 752
TspGWI	ACGGA	1 cut(s)	756
TspRI	CASTG	3 cut(s)	335, 424, 723
Van91I	CCANNNNNTGG	1 cut(s)	381
Vha464I	CTTAAG	1 cut(s)	611
VpaK11BI	GGWCC	1 cut(s)	31
XapI	RAATTY	1 cut(s)	798
XceI	RCATGY	1 cut(s)	97
XcmI	CCANNNNNNNNNTGG	1 cut(s)	538
XmiI	GTMKAC	1 cut(s)	90
XspI	CTAG	2 cut(s)	266, 805

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.