Rmu_sc0008728.1_g000006

Putative peptidoglycan binding domain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008728.1
Physical Location & Seq
Forward (+)
37455 .. 41297
3843 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008728.1_g000006.1.cds

Sequence Viewer

Length: 1071 bp
atgtcttcttcgtctctcactctctttcttcaccctcatcctcctcgtctgaaccacctcaaacccaacctctactccctctccttcaaaccccacatttgcttctcttcaaactccaactcccaccacgacgccacctccgaagactcccgctggctccgcgaagagcagcgctggctgcgagaggagcagcgctggctccgcgaagagcagcgctgggcgcgtgaccgcgactctctcctccgcgaaatcgccgaccttaagctcaaaatccaggccctggagctccagagccctctccaggcaggcgcctcgtcggagactattgccaacatcgccgggttgctgcagtcgctgaaggagaagaaccagattgccgagacggggtcgagttccagagcgctggagttggaagatcatcataatcaggtgaaggaggtgttcgctgtttcggaagtgaggaagacaaaggaggttctgagaaagggttccgaaggagaacatgttcgagcaatgcaggaagcgttgctaaaatcaggattttactcgggtgaagaagacatggaattttccaacttctcaagcgggacagaacgggctgtcaagacttggcaagcctccataggtttgcctgaagatggaataatgaccgaagaacttcttgaaatattatttgacccaaaaactgagggcgctgttgaaacaaaggaagatgcaaatggagctgcaggtatgtctgtaacagaaatttcagaggtgaagcaaatagtattgaaagaagatgctgcagaggtagatgaatctcaccatagagtttttcttctaggagaaaaccgctgggaagaaccttcaagactaaacaagaaaaaagggagtgaaaccaatacaacgggtaccacaacaacatgccttacttgccgtggggaaggtcgcttattgtgcacagaatgtgatggaactggtgaacctaatatcgaggaacagttcttggaatggattgatgaaggagcaaagtgtccatactgtgaaggtcttgggtttacagcttgcgatgtatgtggaggaaaatag

Protein Analysis

356

Amino Acids

39.95

Weight (kDa)

5.04

Isoelectric Point (pI)

62.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 719
Acc65I GGTACC 1 cut(s) 893
AccB1I GGYRCC 2 cut(s) 308, 893
AccB7I CCANNNNNTGG 1 cut(s) 280
AccII CGCG 5 cut(s) 162, 204, 223, 231, 246
AciI CCGC 7 cut(s) 151, 160, 202, 229, 244, 585, 835
AcsI RAATTY 2 cut(s) 566, 747
AcuI CTGAAG 2 cut(s) 377, 654
AcyI GRCGYC 2 cut(s) 132, 309
AfaI GTAC 1 cut(s) 895
AfeI AGCGCT 4 cut(s) 173, 194, 215, 402
AfiI CCNNNNNNNGG 4 cut(s) 280, 301, 384, 638
AflII CTTAAG 1 cut(s) 260
AflIII ACRYGT 1 cut(s) 502
AgsI TTSAA 6 cut(s) 88, 111, 665, 701, 775, 852
AjnI CCWGG 3 cut(s) 273, 279, 300
AloI GAACNNNNNNTCC 2 cut(s) 489, 521
AluBI AGCT 4 cut(s) 265, 286, 725, 1046
AluI AGCT 4 cut(s) 265, 286, 725, 1046
Alw21I GWGCWC 2 cut(s) 288, 944
Alw26I GTCTC 3 cut(s) 18, 314, 374
Alw44I GTGCAC 1 cut(s) 940
AlwNI CAGNNNCTG 2 cut(s) 280, 355
Ama87I CYCGRG 1 cut(s) 547
Aor51HI AGCGCT 4 cut(s) 173, 194, 215, 402
AoxI GGCC 1 cut(s) 276
ApaLI GTGCAC 1 cut(s) 940
ApeKI GCWGC 7 cut(s) 169, 178, 190, 211, 346, 725, 785
ApoI RAATTY 2 cut(s) 566, 747
Asp700I GAANNNNTTC 3 cut(s) 487, 504, 657
Asp718I GGTACC 1 cut(s) 893
AspLEI GCGC 7 cut(s) 174, 195, 216, 223, 311, 403, 695
AspS9I GGNCC 1 cut(s) 277
AsuC2I CCSGG 1 cut(s) 340
AsuHPI GGTGA 6 cut(s) 23, 442, 563, 769, 797, 974
AvaI CYCGRG 1 cut(s) 547
BaeGI GKGCMC 1 cut(s) 944
BanI GGYRCC 2 cut(s) 308, 893
BanII GRGCYC 2 cut(s) 288, 296
BbsI GAAGAC 3 cut(s) 150, 470, 564
Bbv12I GWGCWC 2 cut(s) 288, 944
BbvI GCAGC 7 cut(s) 165, 181, 202, 223, 333, 712, 772
BccI CCATC 2 cut(s) 632, 947
BceAI ACGGC 1 cut(s) 903
BcgI CGANNNNNNTGC 2 cut(s) 294, 328
BciT130I CCWGG 3 cut(s) 275, 281, 302
BcnI CCSGG 1 cut(s) 340
BcoDI GTCTC 3 cut(s) 18, 314, 374
BfaI CTAG 1 cut(s) 824
BfmI CTRYAG 3 cut(s) 347, 726, 786
BfoI RGCGCY 6 cut(s) 175, 196, 217, 312, 404, 696
BfrI CTTAAG 1 cut(s) 260
BfuAI ACCTGC 1 cut(s) 719
BisI GCNGC 7 cut(s) 170, 179, 191, 212, 347, 726, 786
BlsI GCNGC 7 cut(s) 171, 180, 192, 213, 348, 727, 787
Bme1390I CCNGG 4 cut(s) 275, 281, 302, 340
BmeT110I CYCGRG 1 cut(s) 547
BmgT120I GGNCC 1 cut(s) 277
BmiI GGNNCC 5 cut(s) 158, 200, 310, 490, 895
BmrFI CCNGG 4 cut(s) 275, 281, 302, 340
BmsI GCATC 2 cut(s) 703, 772
BpiI GAAGAC 3 cut(s) 150, 470, 564
BpmI CTGGAG 4 cut(s) 272, 284, 302, 425
BpuEI CTTGAG 1 cut(s) 565
BpuMI CCSGG 1 cut(s) 340
BsaHI GRCGYC 2 cut(s) 132, 309
BsaJI CCNNGG 2 cut(s) 279, 919
Bsc4I CCNNNNNNNGG 4 cut(s) 280, 301, 384, 638
Bse1I ACTGG 1 cut(s) 964
Bse3DI GCAATG 1 cut(s) 519
BseBI CCWGG 3 cut(s) 275, 281, 302
BseDI CCNNGG 2 cut(s) 279, 919
BseGI GGATG 1 cut(s) 37
BseLI CCNNNNNNNGG 4 cut(s) 280, 301, 384, 638
BseMI GCAATG 1 cut(s) 519
BseMII CTCAG 2 cut(s) 470, 678
BseNI ACTGG 1 cut(s) 964
BseRI GAGGAG 3 cut(s) 33, 200, 230
BseSI GKGCMC 1 cut(s) 944
BseXI GCAGC 7 cut(s) 165, 181, 202, 223, 333, 712, 772
BseYI CCCAGC 2 cut(s) 216, 837
Bsh1236I CGCG 5 cut(s) 162, 204, 223, 231, 246
BshFI GGCC 1 cut(s) 278
BshNI GGYRCC 2 cut(s) 308, 893
BsiHKAI GWGCWC 2 cut(s) 288, 944
BsiHKCI CYCGRG 1 cut(s) 547
BsiSI CCGG 1 cut(s) 339
BslFI GGGAC 1 cut(s) 601
BslI CCNNNNNNNGG 4 cut(s) 280, 301, 384, 638
BsmAI GTCTC 3 cut(s) 18, 314, 374
BsmBI CGTCTC 2 cut(s) 18, 374
BsmFI GGGAC 1 cut(s) 601
BsnI GGCC 1 cut(s) 278
BsoBI CYCGRG 1 cut(s) 547
Bsp1286I GDGCHC 3 cut(s) 288, 296, 944
Bsp143I GATC 1 cut(s) 415
BspACI CCGC 7 cut(s) 151, 160, 202, 229, 244, 585, 835
BspANI GGCC 1 cut(s) 278
BspCNI CTCAG 2 cut(s) 471, 679
BspFNI CGCG 5 cut(s) 162, 204, 223, 231, 246
BspLI GGNNCC 5 cut(s) 158, 200, 310, 490, 895
BspMAI CTGCAG 3 cut(s) 351, 730, 790
BspMI ACCTGC 1 cut(s) 719
BspQI GCTCTTC 2 cut(s) 159, 201
BspT107I GGYRCC 2 cut(s) 308, 893
BspTI CTTAAG 1 cut(s) 260
BsrDI GCAATG 1 cut(s) 519
BsrI ACTGG 1 cut(s) 964
BssECI CCNNGG 2 cut(s) 279, 919
BssMI GATC 1 cut(s) 415
BssNI GRCGYC 2 cut(s) 132, 309
Bst2UI CCWGG 3 cut(s) 275, 281, 302
Bst4CI ACNGT 2 cut(s) 984, 1025
Bst6I CTCTTC 3 cut(s) 112, 159, 201
BstACI GRCGYC 2 cut(s) 132, 309
BstAFI CTTAAG 1 cut(s) 260
BstC8I GCNNGC 6 cut(s) 155, 176, 197, 307, 615, 1048
BstDEI CTNAG 2 cut(s) 479, 687
BstDSI CCRYGG 1 cut(s) 919
BstF5I GGATG 1 cut(s) 37
BstFNI CGCG 5 cut(s) 162, 204, 223, 231, 246
BstH2I RGCGCY 6 cut(s) 175, 196, 217, 312, 404, 696
BstHHI GCGC 7 cut(s) 174, 195, 216, 223, 311, 403, 695
BstKTI GATC 1 cut(s) 418
BstMAI GTCTC 3 cut(s) 18, 314, 374
BstMBI GATC 1 cut(s) 415
BstNI CCWGG 3 cut(s) 275, 281, 302
BstNSI RCATGY 2 cut(s) 506, 909
BstSCI CCNGG 4 cut(s) 273, 279, 300, 338
BstSFI CTRYAG 3 cut(s) 347, 726, 786
BstSLI GKGCMC 1 cut(s) 944
BstUI CGCG 5 cut(s) 162, 204, 223, 231, 246
BstV1I GCAGC 7 cut(s) 165, 181, 202, 223, 333, 712, 772
BstV2I GAAGAC 3 cut(s) 150, 470, 564
BstXI CCANNNNNNTGG 1 cut(s) 403
BsuRI GGCC 1 cut(s) 278
BtgI CCRYGG 1 cut(s) 919
BtgZI GCGATG 2 cut(s) 319, 1065
BtsCI GGATG 1 cut(s) 37
BveI ACCTGC 1 cut(s) 719
Cac8I GCNNGC 6 cut(s) 155, 176, 197, 307, 615, 1048
CaiI CAGNNNCTG 2 cut(s) 280, 355
CfoI GCGC 7 cut(s) 174, 195, 216, 223, 311, 403, 695
Cfr13I GGNCC 1 cut(s) 277
CseI GACGC 1 cut(s) 140
Csp6I GTAC 1 cut(s) 894
CviAII CATG 3 cut(s) 503, 562, 906
CviQI GTAC 1 cut(s) 894
DdeI CTNAG 2 cut(s) 479, 687
DinI GGCGCC 1 cut(s) 310
DpnI GATC 1 cut(s) 417
DpnII GATC 1 cut(s) 415
Eam1104I CTCTTC 3 cut(s) 112, 159, 201
EarI CTCTTC 3 cut(s) 112, 159, 201
Ecl136II GAGCTC 1 cut(s) 286
Eco24I GRGCYC 2 cut(s) 288, 296
Eco47III AGCGCT 4 cut(s) 173, 194, 215, 402
Eco53kI GAGCTC 1 cut(s) 286
Eco57I CTGAAG 2 cut(s) 377, 654
Eco88I CYCGRG 1 cut(s) 547
EcoICRI GAGCTC 1 cut(s) 286
EcoO109I RGGNCCY 1 cut(s) 277
EcoRII CCWGG 3 cut(s) 273, 279, 300
EcoT38I GRGCYC 2 cut(s) 288, 296
EgeI GGCGCC 1 cut(s) 310
EheI GGCGCC 1 cut(s) 310
Esp3I CGTCTC 2 cut(s) 18, 374
FaeI CATG 3 cut(s) 506, 565, 909
FaiI YATR 9 cut(s) 423, 504, 563, 623, 734, 810, 907, 1021, 1057
FalI AAGNNNNNCTT 2 cut(s) 645, 677
FaqI GGGAC 1 cut(s) 601
FatI CATG 3 cut(s) 502, 561, 905
FauI CCCGC 2 cut(s) 158, 578
Fnu4HI GCNGC 7 cut(s) 170, 179, 191, 212, 347, 726, 786
FokI GGATG 1 cut(s) 24
FriOI GRGCYC 2 cut(s) 288, 296
Fsp4HI GCNGC 7 cut(s) 170, 179, 191, 212, 347, 726, 786
FspBI CTAG 1 cut(s) 824
GlaI GCGC 7 cut(s) 173, 194, 215, 222, 310, 402, 694
GluI GCNGC 7 cut(s) 170, 179, 191, 212, 347, 726, 786
GsaI CCCAGC 2 cut(s) 220, 841
GsuI CTGGAG 4 cut(s) 272, 284, 302, 425
HaeII RGCGCY 6 cut(s) 175, 196, 217, 312, 404, 696
HaeIII GGCC 1 cut(s) 278
HapII CCGG 1 cut(s) 339
HgaI GACGC 1 cut(s) 140
HhaI GCGC 7 cut(s) 174, 195, 216, 223, 311, 403, 695
Hin1I GRCGYC 2 cut(s) 132, 309
Hin1II CATG 3 cut(s) 506, 565, 909
Hin6I GCGC 7 cut(s) 172, 193, 214, 221, 309, 401, 693
HinP1I GCGC 7 cut(s) 172, 193, 214, 221, 309, 401, 693
HinfI GANTC 3 cut(s) 146, 233, 800
HpaII CCGG 1 cut(s) 339
HphI GGTGA 6 cut(s) 23, 442, 563, 769, 797, 974
Hpy166II GTNNAC 3 cut(s) 942, 965, 1041
Hpy188I TCNGA 7 cut(s) 51, 142, 319, 454, 480, 493, 754
Hpy188III TCNNGA 6 cut(s) 289, 396, 537, 604, 662, 852
Hpy8I GTNNAC 3 cut(s) 942, 965, 1041
Hpy99I CGWCG 2 cut(s) 134, 319
HpyAV CCTTC 8 cut(s) 94, 352, 427, 488, 858, 920, 998, 1022
HpyCH4III ACNGT 2 cut(s) 984, 1025
HpyCH4V TGCA 6 cut(s) 349, 517, 716, 728, 788, 942
HpyF3I CTNAG 2 cut(s) 479, 687
Hsp92I GRCGYC 2 cut(s) 132, 309
Hsp92II CATG 3 cut(s) 506, 565, 909
HspAI GCGC 7 cut(s) 172, 193, 214, 221, 309, 401, 693
KasI GGCGCC 1 cut(s) 308
KpnI GGTACC 1 cut(s) 897
Kzo9I GATC 1 cut(s) 415
LguI GCTCTTC 2 cut(s) 159, 201
LmnI GCTCC 7 cut(s) 162, 187, 204, 283, 291, 722, 1007
Lsp1109I GCAGC 7 cut(s) 165, 181, 202, 223, 333, 712, 772
LweI GCATC 2 cut(s) 703, 772
MaeI CTAG 1 cut(s) 824
MaeIII GTNAC 2 cut(s) 224, 739
MalI GATC 1 cut(s) 417
MboI GATC 1 cut(s) 415
MhlI GDGCHC 3 cut(s) 288, 296, 944
MluCI AATT 2 cut(s) 566, 747
Mly113I GGCGCC 1 cut(s) 309
MlyI GAGTC 2 cut(s) 140, 227
MmeI TCCRAC 4 cut(s) 141, 297, 390, 597
MroXI GAANNNNTTC 3 cut(s) 487, 504, 657
MseI TTAA 1 cut(s) 261
MspA1I CMGCKG 2 cut(s) 153, 837
MspCI CTTAAG 1 cut(s) 260
MspI CCGG 1 cut(s) 339
MspR9I CCNGG 4 cut(s) 275, 281, 302, 340
MvaI CCWGG 3 cut(s) 275, 281, 302
MvnI CGCG 5 cut(s) 162, 204, 223, 231, 246
NarI GGCGCC 1 cut(s) 309
NciI CCSGG 1 cut(s) 340
NdeII GATC 1 cut(s) 415
NlaIII CATG 3 cut(s) 506, 565, 909
NlaIV GGNNCC 5 cut(s) 158, 200, 310, 490, 895
NmeAIII GCCGAG 1 cut(s) 403
NmuCI GTSAC 1 cut(s) 224
NspI RCATGY 2 cut(s) 506, 909
PciI ACATGT 1 cut(s) 502
PciSI GCTCTTC 2 cut(s) 159, 201
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PdmI GAANNNNTTC 3 cut(s) 487, 504, 657
PfeI GAWTC 1 cut(s) 800
PflFI GACNNNGTC 1 cut(s) 385
PflMI CCANNNNNTGG 1 cut(s) 280
PkrI GCNGC 7 cut(s) 171, 180, 192, 213, 348, 727, 787
PleI GAGTC 2 cut(s) 140, 227
PluTI GGCGCC 1 cut(s) 312
PpsI GAGTC 2 cut(s) 140, 227
PscI ACATGT 1 cut(s) 502
Psp124BI GAGCTC 1 cut(s) 288
Psp6I CCWGG 3 cut(s) 273, 279, 300
PspFI CCCAGC 2 cut(s) 216, 837
PspGI CCWGG 3 cut(s) 273, 279, 300
PspN4I GGNNCC 5 cut(s) 158, 200, 310, 490, 895
PspPI GGNCC 1 cut(s) 277
PstI CTGCAG 3 cut(s) 351, 730, 790
PstNI CAGNNNCTG 2 cut(s) 280, 355
PsyI GACNNNGTC 1 cut(s) 385
RsaI GTAC 1 cut(s) 895
RsaNI GTAC 1 cut(s) 894
SacI GAGCTC 1 cut(s) 288
SapI GCTCTTC 2 cut(s) 159, 201
SaqAI TTAA 1 cut(s) 261
SatI GCNGC 7 cut(s) 170, 179, 191, 212, 347, 726, 786
Sau3AI GATC 1 cut(s) 415
Sau96I GGNCC 1 cut(s) 277
SchI GAGTC 2 cut(s) 140, 227
ScrFI CCNGG 4 cut(s) 275, 281, 302, 340
SduI GDGCHC 3 cut(s) 288, 296, 944
SfaNI GCATC 2 cut(s) 703, 772
SfcI CTRYAG 3 cut(s) 347, 726, 786
SfoI GGCGCC 1 cut(s) 310
SmlI CTYRAG 2 cut(s) 260, 580
SmoI CTYRAG 2 cut(s) 260, 580
Sse9I AATT 2 cut(s) 566, 747
SsiI CCGC 7 cut(s) 151, 160, 202, 229, 244, 585, 835
SspDI GGCGCC 1 cut(s) 308
SspI AATATT 1 cut(s) 669
SspMI CTAG 1 cut(s) 824
SstI GAGCTC 1 cut(s) 288
StyD4I CCNGG 4 cut(s) 273, 279, 300, 338
TaaI ACNGT 2 cut(s) 984, 1025
TaqI TCGA 3 cut(s) 389, 508, 975
TaqII GACCGA 1 cut(s) 665
TasI AATT 2 cut(s) 566, 747
TfiI GAWTC 1 cut(s) 800
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TseFI GTSAC 1 cut(s) 224
TseI GCWGC 7 cut(s) 169, 178, 190, 211, 346, 725, 785
Tsp45I GTSAC 1 cut(s) 224
TspDTI ATGAA 2 cut(s) 813, 1017
Tth111I GACNNNGTC 1 cut(s) 385
Van91I CCANNNNNTGG 1 cut(s) 280
Vha464I CTTAAG 1 cut(s) 260
VneI GTGCAC 1 cut(s) 940
XapI RAATTY 2 cut(s) 566, 747
XceI RCATGY 2 cut(s) 506, 909
XmnI GAANNNNTTC 3 cut(s) 487, 504, 657
XspI CTAG 1 cut(s) 824
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.