Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0007818

Physical Location & Seq

Genomic Coordinates Reverse (-)

31906158 .. 31910213

Gene Structure 4056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0302300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGGGCATGTATTGTGGGATTGTACAAACGCCAGGCAGGTATGGGAAGCTGTTTCAGTCCCTGCTGCTATGAAGATATATAACCTTCAACCTGGGATGGAAAGATTGGATTACTTCCAGTCTAAAGCAAGCGAGGATTGGAGCTGGAGAAGTTACCAAGCTGAGGCTTGGGGCCTTTTTCATGGACTGGAGCTTGCTACTTCTCTGAATATAAACAAACGGGAGGTTAAATCTCGTACTGATTGTTTAGTGAATATTTTACAAGGTGAGAACATTGATCATCCTCTTGGCACTCTTCTTCTGAACTACAAGCAGTTGAAGATTCAATTCGATGAGGTGAAAGTCAAGCACATTCACTGGGAGGGGAAAATGGTTGCCGATATTCTTGCTAAGGAAAAGTGTTCATCATTCTGGTGTGTCTACTTTCCAGACCCCTCCTGGCCACTTTGGAGATTGAAGATCTACTTGATGGTATTCTTGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0006139 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009295 GO:0009314 GO:0009408 GO:0009416 GO:0009507 GO:0009508 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009657 GO:0009658 GO:0009889 GO:0009941 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016020 GO:0016043 GO:0016070 GO:0016853 GO:0016860 GO:0016864 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032774 GO:0034357 GO:0034641 GO:0034645 GO:0034654 GO:0042644 GO:0042646 GO:0042651 GO:0042793 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055035 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:0140096 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PG_binding_1

Protein Analysis

161

Amino Acids

18.91

Weight (kDa)

6.95

Isoelectric Point (pI)

48.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	51 - 132	2.8e-12	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13670 AT4G13670 AT4G13670 AT4G13670
fragaria_vesca	FvH4_4g00470 FvH4_4g00470
malus_domestica	MD04G1005000.v1.1
prunus_persica	Prupe.1G004900_v2.0.a1 Prupe.3G076100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0385901
rosa_laevigata	RLG00000010204
rosa_multiflora	Rmu_co7989456.1_g000001 Rmu_sc0007400.1_g000001 Rmu_sc0008728.1_g000006
rosa_roxburghii	Rroxscaffold_5G00333490
rosa_rugosa	Rorug03G0302300 Rorug03G0302400 Rorug03G0302500
rosa_samantha	Rh4AG007100 Rh4BG004700 Rh4BG004800 Rh4CG007700 Rh4DG006700
rosa_wichuraiana	Rw4G000340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	28
AccI	GTMKAC	1 cut(s)	420
AcoI	YGGCCR	1 cut(s)	440
AfaI	GTAC	2 cut(s)	25, 238
AfiI	CCNNNNNNNGG	1 cut(s)	163
AgsI	TTSAA	4 cut(s)	89, 319, 326, 457
AjnI	CCWGG	3 cut(s)	32, 91, 437
AluBI	AGCT	4 cut(s)	50, 144, 161, 193
AluI	AGCT	4 cut(s)	50, 144, 161, 193
AlwNI	CAGNNNCTG	1 cut(s)	62
AoxI	GGCC	2 cut(s)	172, 440
ApeKI	GCWGC	1 cut(s)	65
AspS9I	GGNCC	1 cut(s)	172
AsuHPI	GGTGA	2 cut(s)	278, 349
BalI	TGGCCA	1 cut(s)	442
BbvCI	CCTCAGC	1 cut(s)	162
BbvI	GCAGC	1 cut(s)	52
BccI	CCATC	2 cut(s)	91, 463
BcgI	CGANNNNNNTGC	2 cut(s)	368, 402
BciT130I	CCWGG	3 cut(s)	34, 93, 439
BclI	TGATCA	1 cut(s)	277
BfuAI	ACCTGC	1 cut(s)	28
BglII	AGATCT	1 cut(s)	459
BisI	GCNGC	1 cut(s)	66
BlsI	GCNGC	1 cut(s)	67
Bme1390I	CCNGG	3 cut(s)	34, 93, 439
BmgT120I	GGNCC	1 cut(s)	172
BmiI	GGNNCC	1 cut(s)	173
BmrFI	CCNGG	3 cut(s)	34, 93, 439
BmrI	ACTGGG	1 cut(s)	367
BmuI	ACTGGG	1 cut(s)	367
BpmI	CTGGAG	2 cut(s)	166, 209
Bpu10I	CCTNAGC	2 cut(s)	162, 390
BsaJI	CCNNGG	1 cut(s)	92
Bsc4I	CCNNNNNNNGG	1 cut(s)	163
Bse1I	ACTGG	3 cut(s)	118, 192, 362
BseBI	CCWGG	3 cut(s)	34, 93, 439
BseDI	CCNNGG	1 cut(s)	92
BseGI	GGATG	2 cut(s)	102, 280
BseLI	CCNNNNNNNGG	1 cut(s)	163
BseMII	CTCAG	1 cut(s)	153
BseNI	ACTGG	3 cut(s)	118, 192, 362
BseXI	GCAGC	1 cut(s)	52
BshFI	GGCC	2 cut(s)	174, 442
BslFI	GGGAC	1 cut(s)	44
BslI	CCNNNNNNNGG	1 cut(s)	163
BsmFI	GGGAC	1 cut(s)	44
BsnI	GGCC	2 cut(s)	174, 442
Bsp1407I	TGTACA	1 cut(s)	23
Bsp143I	GATC	2 cut(s)	277, 459
BspANI	GGCC	2 cut(s)	174, 442
BspCNI	CTCAG	1 cut(s)	154
BspLI	GGNNCC	1 cut(s)	173
BspMI	ACCTGC	1 cut(s)	28
BsrGI	TGTACA	1 cut(s)	23
BsrI	ACTGG	3 cut(s)	118, 192, 362
BssECI	CCNNGG	1 cut(s)	92
BssMI	GATC	2 cut(s)	277, 459
Bst2UI	CCWGG	3 cut(s)	34, 93, 439
Bst6I	CTCTTC	1 cut(s)	300
BstAUI	TGTACA	1 cut(s)	23
BstC8I	GCNNGC	2 cut(s)	130, 195
BstDEI	CTNAG	2 cut(s)	162, 390
BstF5I	GGATG	2 cut(s)	102, 280
BstKTI	GATC	2 cut(s)	280, 462
BstMBI	GATC	2 cut(s)	277, 459
BstNI	CCWGG	3 cut(s)	34, 93, 439
BstNSI	RCATGY	1 cut(s)	11
BstSCI	CCNGG	3 cut(s)	32, 91, 437
BstV1I	GCAGC	1 cut(s)	52
BstX2I	RGATCY	1 cut(s)	459
BstYI	RGATCY	1 cut(s)	459
BsuRI	GGCC	2 cut(s)	174, 442
BtsCI	GGATG	2 cut(s)	102, 280
BtsIMutI	CAGTG	1 cut(s)	355
BveI	ACCTGC	1 cut(s)	28
Cac8I	GCNNGC	2 cut(s)	130, 195
CaiI	CAGNNNCTG	1 cut(s)	62
Cfr13I	GGNCC	1 cut(s)	172
Csp6I	GTAC	2 cut(s)	24, 237
CviAII	CATG	2 cut(s)	8, 182
CviJI	RGCY	7 cut(s)	50, 144, 161, 167, 174, 193, 442
CviKI_1	RGCY	7 cut(s)	50, 144, 161, 167, 174, 193, 442
CviQI	GTAC	2 cut(s)	24, 237
DdeI	CTNAG	2 cut(s)	162, 390
DpnI	GATC	2 cut(s)	279, 461
DpnII	GATC	2 cut(s)	277, 459
EaeI	YGGCCR	1 cut(s)	440
Eam1104I	CTCTTC	1 cut(s)	300
EarI	CTCTTC	1 cut(s)	300
EcoO109I	RGGNCCY	1 cut(s)	172
EcoRII	CCWGG	3 cut(s)	32, 91, 437
FaeI	CATG	2 cut(s)	11, 185
FaiI	YATR	8 cut(s)	9, 43, 71, 79, 81, 183, 212, 484
FalI	AAGNNNNNCTT	2 cut(s)	449, 481
FaqI	GGGAC	1 cut(s)	44
FatI	CATG	2 cut(s)	7, 181
FbaI	TGATCA	1 cut(s)	277
FblI	GTMKAC	1 cut(s)	420
Fnu4HI	GCNGC	1 cut(s)	66
FokI	GGATG	2 cut(s)	109, 267
Fsp4HI	GCNGC	1 cut(s)	66
GluI	GCNGC	1 cut(s)	66
GsuI	CTGGAG	2 cut(s)	166, 209
HaeIII	GGCC	2 cut(s)	174, 442
Hin1II	CATG	2 cut(s)	11, 185
HinfI	GANTC	1 cut(s)	322
HphI	GGTGA	2 cut(s)	278, 349
Hpy166II	GTNNAC	1 cut(s)	421
Hpy188I	TCNGA	2 cut(s)	207, 303
Hpy188III	TCNNGA	1 cut(s)	428
Hpy8I	GTNNAC	1 cut(s)	421
HpyAV	CCTTC	1 cut(s)	95
HpyF3I	CTNAG	2 cut(s)	162, 390
Hsp92II	CATG	2 cut(s)	11, 185
Ksp22I	TGATCA	1 cut(s)	277
Kzo9I	GATC	2 cut(s)	277, 459
LmnI	GCTCC	2 cut(s)	141, 190
Lsp1109I	GCAGC	1 cut(s)	52
MaeIII	GTNAC	1 cut(s)	152
MalI	GATC	2 cut(s)	279, 461
MboI	GATC	2 cut(s)	277, 459
MboII	GAAGA	5 cut(s)	85, 287, 290, 331, 469
MflI	RGATCY	1 cut(s)	459
MlsI	TGGCCA	1 cut(s)	442
MluCI	AATT	1 cut(s)	326
MluNI	TGGCCA	1 cut(s)	442
MnlI	CCTC	7 cut(s)	127, 157, 217, 294, 328, 355, 445
Mox20I	TGGCCA	1 cut(s)	442
MscI	TGGCCA	1 cut(s)	442
MseI	TTAA	1 cut(s)	228
MslI	CAYNNNNRTG	1 cut(s)	412
Msp20I	TGGCCA	1 cut(s)	442
MspR9I	CCNGG	3 cut(s)	34, 93, 439
MvaI	CCWGG	3 cut(s)	34, 93, 439
NdeII	GATC	2 cut(s)	277, 459
NlaIII	CATG	2 cut(s)	11, 185
NlaIV	GGNNCC	1 cut(s)	173
NspI	RCATGY	1 cut(s)	11
PfeI	GAWTC	1 cut(s)	322
PkrI	GCNGC	1 cut(s)	67
Psp6I	CCWGG	3 cut(s)	32, 91, 437
PspGI	CCWGG	3 cut(s)	32, 91, 437
PspN4I	GGNNCC	1 cut(s)	173
PspPI	GGNCC	1 cut(s)	172
PstNI	CAGNNNCTG	1 cut(s)	62
PsuI	RGATCY	1 cut(s)	459
RsaI	GTAC	2 cut(s)	25, 238
RsaNI	GTAC	2 cut(s)	24, 237
RseI	CAYNNNNRTG	1 cut(s)	412
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	1 cut(s)	66
Sau3AI	GATC	2 cut(s)	277, 459
Sau96I	GGNCC	1 cut(s)	172
ScrFI	CCNGG	3 cut(s)	34, 93, 439
SmiMI	CAYNNNNRTG	1 cut(s)	412
Sse9I	AATT	1 cut(s)	326
SspI	AATATT	1 cut(s)	256
StyD4I	CCNGG	3 cut(s)	32, 91, 437
TaqI	TCGA	1 cut(s)	330
TasI	AATT	1 cut(s)	326
TatI	WGTACW	1 cut(s)	23
TfiI	GAWTC	1 cut(s)	322
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	1 cut(s)	362
TseI	GCWGC	1 cut(s)	65
TspDTI	ATGAA	3 cut(s)	86, 170, 393
TspRI	CASTG	1 cut(s)	362
XceI	RCATGY	1 cut(s)	11
XcmI	CCANNNNNNNNNTGG	1 cut(s)	435
XmiI	GTMKAC	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.