Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0007818

Physical Location & Seq

Genomic Coordinates Reverse (-)

443410 .. 447723

Gene Structure 4314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g00470.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGTCTTGTTCATCTCTGTCTCTGTTTCTTCACCCTCATCCTCCTCGTCTGAACCACCTCAAACCCCACCACCTCAACTCTTCCCTCTCCTTCAAATCCCACATTTGCTTCTCTTCCACCTCCGAAGACTCCCGCTGGCTCCGCGAAGAGCAGCGCTGGCTGCGCGAGGAGCAGCGCTGGCTCCGCGAAGAGCAACGCTGGGCGCGTGAACGCGACTCTCTCCTCCGCGAGATCGCCGACCTCAAGCTCAAACTACAGGCTCTCCAGGCCGGCGCTTCGTCCGAGAACATTGCCAGCATTGCCGGACTGCTGCAGTCGTTGAAGGAGAAGAGCCAGATCGCCGAGACGGGGTCGAGTTCGATACCGCTGGAGTTGGAGGACAAGGAGTTCAAAGAGGTGTTCACTGTTTCTGAAGTGAAGAAGACAAAGGTGGCTCTGAGGAAAGGCTCCGAGGGAGAACACGTTCGAGCAATGCAGGAATCATTGCTGAAATCAGGATTTTACTCGGGTGAAGAAGACATGGAATTTTCTAATTTCTCAAGCGGGACGGAAAGAGCTGTCAAGACTTGGCAAGCCTCCATAGGTCTCCCTGAAGATGGAATAATGACTGAAGAACTTCTTGAAAGATTATTTAACGACCCTCAGGCTGACGGTGCTGTTGAATCAAAGGAAGATGCAAATGGAGCTGCAGGTACGTCTGTGACAGAAATCTCAGAGGTGAAGCAAATAGTATTGAAAGAAGATGCTGCAGACGTAGATGAATCTTACCATCGAGTTTTTCTTCTAGGAGAAAACCGCTGGGAAGAACCTTCAAGACTAAACAAGAATAAAGGGAGTGAAACCAACACAACAGGTACCGCAACAAAATGCCTTACTTGCCGTGGGGAGGGTCGCTTATTGTGCACAGAATGTGATGGAACTGGCGAACCTAACATTGAGGAACAGTTCTTGGAGTGGATAGATGAAGGAGCAAAGTGTCCATACTGTGAAGGTCTTGGGTTTACAGTTTGCGATGTATGTGAAGGGAAATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0006139 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009295 GO:0009314 GO:0009408 GO:0009416 GO:0009507 GO:0009508 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009657 GO:0009658 GO:0009889 GO:0009941 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016020 GO:0016043 GO:0016070 GO:0016853 GO:0016860 GO:0016864 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032774 GO:0034357 GO:0034641 GO:0034645 GO:0034654 GO:0042644 GO:0042646 GO:0042651 GO:0042793 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055035 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:0140096 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PG_binding_1

Protein Analysis

345

Amino Acids

38.67

Weight (kDa)

4.96

Isoelectric Point (pI)

58.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PG_binding_1	PF01471	152 - 210	1.9e-11	Putative peptidoglycan binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13670 AT4G13670 AT4G13670 AT4G13670
fragaria_vesca	FvH4_4g00470 FvH4_4g00470
malus_domestica	MD04G1005000.v1.1
prunus_persica	Prupe.1G004900_v2.0.a1 Prupe.3G076100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0385901
rosa_laevigata	RLG00000010204
rosa_multiflora	Rmu_co7989456.1_g000001 Rmu_sc0007400.1_g000001 Rmu_sc0008728.1_g000006
rosa_roxburghii	Rroxscaffold_5G00333490
rosa_rugosa	Rorug03G0302300 Rorug03G0302400 Rorug03G0302500
rosa_samantha	Rh4AG007100 Rh4BG004700 Rh4BG004800 Rh4CG007700 Rh4DG006700
rosa_wichuraiana	Rw4G000340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	680
Acc65I	GGTACC	1 cut(s)	854
AccB1I	GGYRCC	1 cut(s)	854
AccII	CGCG	6 cut(s)	144, 165, 186, 205, 213, 228
AciI	CCGC	8 cut(s)	133, 142, 184, 226, 365, 543, 796, 858
AcsI	RAATTY	1 cut(s)	524
AcuI	CTGAAG	3 cut(s)	432, 612, 630
AfaI	GTAC	2 cut(s)	694, 856
AfeI	AGCGCT	2 cut(s)	155, 176
AfiI	CCNNNNNNNGG	3 cut(s)	348, 596, 886
AflIII	ACRYGT	1 cut(s)	460
AgsI	TTSAA	7 cut(s)	94, 322, 391, 623, 662, 736, 813
AjnI	CCWGG	1 cut(s)	264
AloI	GAACNNNNNNTCC	4 cut(s)	371, 403, 447, 479
AluBI	AGCT	3 cut(s)	247, 557, 686
AluI	AGCT	3 cut(s)	247, 557, 686
Alw21I	GWGCWC	1 cut(s)	905
Alw26I	GTCTC	3 cut(s)	24, 338, 590
Alw44I	GTGCAC	1 cut(s)	901
Ama87I	CYCGRG	1 cut(s)	505
Aor51HI	AGCGCT	2 cut(s)	155, 176
AoxI	GGCC	1 cut(s)	267
ApaLI	GTGCAC	1 cut(s)	901
ApeKI	GCWGC	6 cut(s)	151, 160, 172, 310, 686, 746
ApoI	RAATTY	1 cut(s)	524
Asp700I	GAANNNNTTC	2 cut(s)	462, 615
Asp718I	GGTACC	1 cut(s)	854
AspLEI	GCGC	5 cut(s)	156, 165, 177, 205, 275
AsuHPI	GGTGA	3 cut(s)	23, 521, 730
AvaI	CYCGRG	1 cut(s)	505
AxyI	CCTNAGG	1 cut(s)	642
BaeGI	GKGCMC	1 cut(s)	905
BaeI	ACNNNNGTAYC	2 cut(s)	684, 717
BanI	GGYRCC	1 cut(s)	854
BbsI	GAAGAC	3 cut(s)	132, 428, 522
Bbv12I	GWGCWC	1 cut(s)	905
BbvI	GCAGC	6 cut(s)	147, 163, 184, 297, 673, 733
BccI	CCATC	3 cut(s)	590, 777, 908
BceAI	ACGGC	1 cut(s)	864
BcgI	CGANNNNNNTGC	2 cut(s)	272, 306
BciT130I	CCWGG	1 cut(s)	266
BcoDI	GTCTC	3 cut(s)	24, 338, 590
BfaI	CTAG	1 cut(s)	785
BfmI	CTRYAG	4 cut(s)	254, 311, 687, 747
BfoI	RGCGCY	3 cut(s)	157, 178, 276
BfuAI	ACCTGC	1 cut(s)	680
BisI	GCNGC	6 cut(s)	152, 161, 173, 311, 687, 747
BlsI	GCNGC	6 cut(s)	153, 162, 174, 312, 688, 748
Bme1390I	CCNGG	1 cut(s)	266
BmeT110I	CYCGRG	1 cut(s)	505
BmiI	GGNNCC	4 cut(s)	140, 182, 448, 856
BmrFI	CCNGG	1 cut(s)	266
BmsI	GCATC	2 cut(s)	664, 733
BpiI	GAAGAC	3 cut(s)	132, 428, 522
BpmI	CTGGAG	2 cut(s)	248, 389
BpuEI	CTTGAG	2 cut(s)	227, 523
BsaI	GGTCTC	1 cut(s)	590
BsaJI	CCNNGG	2 cut(s)	450, 880
BsaXI	ACNNNNNCTCC	4 cut(s)	246, 276, 447, 477
Bsc4I	CCNNNNNNNGG	3 cut(s)	348, 596, 886
Bse118I	RCCGGY	1 cut(s)	269
Bse1I	ACTGG	1 cut(s)	925
Bse21I	CCTNAGG	1 cut(s)	642
Bse3DI	GCAATG	4 cut(s)	288, 297, 477, 482
BseBI	CCWGG	1 cut(s)	266
BseDI	CCNNGG	2 cut(s)	450, 880
BseGI	GGATG	1 cut(s)	37
BseLI	CCNNNNNNNGG	3 cut(s)	348, 596, 886
BseMI	GCAATG	4 cut(s)	288, 297, 477, 482
BseMII	CTCAG	3 cut(s)	428, 656, 726
BseNI	ACTGG	1 cut(s)	925
BseRI	GAGGAG	3 cut(s)	33, 182, 212
BseSI	GKGCMC	1 cut(s)	905
BseXI	GCAGC	6 cut(s)	147, 163, 184, 297, 673, 733
BseYI	CCCAGC	2 cut(s)	198, 798
Bsh1236I	CGCG	6 cut(s)	144, 165, 186, 205, 213, 228
BshFI	GGCC	1 cut(s)	269
BshNI	GGYRCC	1 cut(s)	854
BsiHKAI	GWGCWC	1 cut(s)	905
BsiHKCI	CYCGRG	1 cut(s)	505
BsiSI	CCGG	2 cut(s)	270, 303
BslFI	GGGAC	1 cut(s)	559
BslI	CCNNNNNNNGG	3 cut(s)	348, 596, 886
BsmAI	GTCTC	3 cut(s)	24, 338, 590
BsmBI	CGTCTC	1 cut(s)	338
BsmFI	GGGAC	1 cut(s)	559
BsnI	GGCC	1 cut(s)	269
Bso31I	GGTCTC	1 cut(s)	590
BsoBI	CYCGRG	1 cut(s)	505
Bsp1286I	GDGCHC	1 cut(s)	905
Bsp143I	GATC	2 cut(s)	231, 336
BspACI	CCGC	8 cut(s)	133, 142, 184, 226, 365, 543, 796, 858
BspANI	GGCC	1 cut(s)	269
BspCNI	CTCAG	3 cut(s)	429, 655, 725
BspFNI	CGCG	6 cut(s)	144, 165, 186, 205, 213, 228
BspLI	GGNNCC	4 cut(s)	140, 182, 448, 856
BspMAI	CTGCAG	3 cut(s)	315, 691, 751
BspMI	ACCTGC	1 cut(s)	680
BspQI	GCTCTTC	3 cut(s)	141, 183, 323
BspT107I	GGYRCC	1 cut(s)	854
BspTNI	GGTCTC	1 cut(s)	590
BsrDI	GCAATG	4 cut(s)	288, 297, 477, 482
BsrFI	RCCGGY	1 cut(s)	269
BsrI	ACTGG	1 cut(s)	925
BssAI	RCCGGY	1 cut(s)	269
BssECI	CCNNGG	2 cut(s)	450, 880
BssMI	GATC	2 cut(s)	231, 336
Bst2UI	CCWGG	1 cut(s)	266
Bst4CI	ACNGT	5 cut(s)	406, 653, 945, 986, 1006
Bst6I	CTCTTC	5 cut(s)	85, 118, 141, 183, 323
BstC8I	GCNNGC	6 cut(s)	137, 158, 179, 271, 295, 573
BstDEI	CTNAG	3 cut(s)	437, 642, 712
BstDSI	CCRYGG	1 cut(s)	880
BstF5I	GGATG	1 cut(s)	37
BstFNI	CGCG	6 cut(s)	144, 165, 186, 205, 213, 228
BstH2I	RGCGCY	3 cut(s)	157, 178, 276
BstHHI	GCGC	5 cut(s)	156, 165, 177, 205, 275
BstKTI	GATC	2 cut(s)	234, 339
BstMAI	GTCTC	3 cut(s)	24, 338, 590
BstMBI	GATC	2 cut(s)	231, 336
BstNI	CCWGG	1 cut(s)	266
BstSCI	CCNGG	1 cut(s)	264
BstSFI	CTRYAG	4 cut(s)	254, 311, 687, 747
BstSLI	GKGCMC	1 cut(s)	905
BstUI	CGCG	6 cut(s)	144, 165, 186, 205, 213, 228
BstV1I	GCAGC	6 cut(s)	147, 163, 184, 297, 673, 733
BstV2I	GAAGAC	3 cut(s)	132, 428, 522
Bsu36I	CCTNAGG	1 cut(s)	642
BsuRI	GGCC	1 cut(s)	269
BtgI	CCRYGG	1 cut(s)	880
BtgZI	GCGATG	1 cut(s)	1026
BtsCI	GGATG	1 cut(s)	37
BtsIMutI	CAGTG	1 cut(s)	402
BveI	ACCTGC	1 cut(s)	680
Cac8I	GCNNGC	6 cut(s)	137, 158, 179, 271, 295, 573
CfoI	GCGC	5 cut(s)	156, 165, 177, 205, 275
Cfr10I	RCCGGY	1 cut(s)	269
Csp6I	GTAC	2 cut(s)	693, 855
CviAII	CATG	1 cut(s)	520
CviQI	GTAC	2 cut(s)	693, 855
DdeI	CTNAG	3 cut(s)	437, 642, 712
DpnI	GATC	2 cut(s)	233, 338
DpnII	GATC	2 cut(s)	231, 336
Eam1104I	CTCTTC	5 cut(s)	85, 118, 141, 183, 323
EarI	CTCTTC	5 cut(s)	85, 118, 141, 183, 323
Eco31I	GGTCTC	1 cut(s)	590
Eco47III	AGCGCT	2 cut(s)	155, 176
Eco57I	CTGAAG	3 cut(s)	432, 612, 630
Eco81I	CCTNAGG	1 cut(s)	642
Eco88I	CYCGRG	1 cut(s)	505
EcoRII	CCWGG	1 cut(s)	264
Esp3I	CGTCTC	1 cut(s)	338
FaeI	CATG	1 cut(s)	523
FaiI	YATR	4 cut(s)	521, 581, 982, 1018
FalI	AAGNNNNNCTT	2 cut(s)	603, 635
FaqI	GGGAC	1 cut(s)	559
FatI	CATG	1 cut(s)	519
FauI	CCCGC	2 cut(s)	140, 536
Fnu4HI	GCNGC	6 cut(s)	152, 161, 173, 311, 687, 747
FokI	GGATG	1 cut(s)	24
Fsp4HI	GCNGC	6 cut(s)	152, 161, 173, 311, 687, 747
FspBI	CTAG	1 cut(s)	785
GlaI	GCGC	5 cut(s)	155, 164, 176, 204, 274
GluI	GCNGC	6 cut(s)	152, 161, 173, 311, 687, 747
GsaI	CCCAGC	2 cut(s)	202, 802
GsuI	CTGGAG	2 cut(s)	248, 389
HaeII	RGCGCY	3 cut(s)	157, 178, 276
HaeIII	GGCC	1 cut(s)	269
HapII	CCGG	2 cut(s)	270, 303
HhaI	GCGC	5 cut(s)	156, 165, 177, 205, 275
Hin1II	CATG	1 cut(s)	523
Hin6I	GCGC	5 cut(s)	154, 163, 175, 203, 273
HinP1I	GCGC	5 cut(s)	154, 163, 175, 203, 273
HinfI	GANTC	5 cut(s)	128, 215, 479, 662, 761
HpaII	CCGG	2 cut(s)	270, 303
HphI	GGTGA	3 cut(s)	23, 521, 730
Hpy166II	GTNNAC	4 cut(s)	209, 402, 903, 1002
Hpy188I	TCNGA	7 cut(s)	51, 124, 283, 412, 438, 451, 715
Hpy188III	TCNNGA	4 cut(s)	495, 562, 620, 813
Hpy8I	GTNNAC	4 cut(s)	209, 402, 903, 1002
HpyAV	CCTTC	6 cut(s)	100, 316, 819, 959, 983, 1016
HpyCH4III	ACNGT	5 cut(s)	406, 653, 945, 986, 1006
HpyCH4IV	ACGT	3 cut(s)	462, 695, 753
HpyCH4V	TGCA	6 cut(s)	313, 475, 677, 689, 749, 903
HpyF3I	CTNAG	3 cut(s)	437, 642, 712
HpySE526I	ACGT	3 cut(s)	462, 695, 753
Hsp92II	CATG	1 cut(s)	523
HspAI	GCGC	5 cut(s)	154, 163, 175, 203, 273
KpnI	GGTACC	1 cut(s)	858
KroI	GCCGGC	1 cut(s)	269
KroNI	GCCGGC	1 cut(s)	271
Kzo9I	GATC	2 cut(s)	231, 336
LguI	GCTCTTC	3 cut(s)	141, 183, 323
LmnI	GCTCC	6 cut(s)	144, 169, 186, 452, 683, 968
Lsp1109I	GCAGC	6 cut(s)	147, 163, 184, 297, 673, 733
LweI	GCATC	2 cut(s)	664, 733
MaeI	CTAG	1 cut(s)	785
MaeII	ACGT	3 cut(s)	462, 695, 753
MaeIII	GTNAC	1 cut(s)	700
MalI	GATC	2 cut(s)	233, 338
MboI	GATC	2 cut(s)	231, 336
MhlI	GDGCHC	1 cut(s)	905
MluCI	AATT	2 cut(s)	524, 532
MlyI	GAGTC	2 cut(s)	122, 209
MmeI	TCCRAC	1 cut(s)	354
MroNI	GCCGGC	1 cut(s)	269
MroXI	GAANNNNTTC	2 cut(s)	462, 615
MseI	TTAA	1 cut(s)	633
MspA1I	CMGCKG	3 cut(s)	135, 367, 798
MspI	CCGG	2 cut(s)	270, 303
MspR9I	CCNGG	1 cut(s)	266
MvaI	CCWGG	1 cut(s)	266
MvnI	CGCG	6 cut(s)	144, 165, 186, 205, 213, 228
NaeI	GCCGGC	1 cut(s)	271
NdeII	GATC	2 cut(s)	231, 336
NgoMIV	GCCGGC	1 cut(s)	269
NlaIII	CATG	1 cut(s)	523
NlaIV	GGNNCC	4 cut(s)	140, 182, 448, 856
NmeAIII	GCCGAG	1 cut(s)	367
NmuCI	GTSAC	1 cut(s)	700
PciSI	GCTCTTC	3 cut(s)	141, 183, 323
PcsI	WCGNNNNNNNCGW	1 cut(s)	202
PdiI	GCCGGC	1 cut(s)	271
PdmI	GAANNNNTTC	2 cut(s)	462, 615
PfeI	GAWTC	3 cut(s)	479, 662, 761
PflFI	GACNNNGTC	1 cut(s)	349
PkrI	GCNGC	6 cut(s)	153, 162, 174, 312, 688, 748
PleI	GAGTC	2 cut(s)	122, 209
PpsI	GAGTC	2 cut(s)	122, 209
Psp6I	CCWGG	1 cut(s)	264
PspFI	CCCAGC	2 cut(s)	198, 798
PspGI	CCWGG	1 cut(s)	264
PspN4I	GGNNCC	4 cut(s)	140, 182, 448, 856
PstI	CTGCAG	3 cut(s)	315, 691, 751
PsyI	GACNNNGTC	1 cut(s)	349
RsaI	GTAC	2 cut(s)	694, 856
RsaNI	GTAC	2 cut(s)	693, 855
SapI	GCTCTTC	3 cut(s)	141, 183, 323
SaqAI	TTAA	1 cut(s)	633
SatI	GCNGC	6 cut(s)	152, 161, 173, 311, 687, 747
Sau3AI	GATC	2 cut(s)	231, 336
SchI	GAGTC	2 cut(s)	122, 209
ScrFI	CCNGG	1 cut(s)	266
SduI	GDGCHC	1 cut(s)	905
SfaNI	GCATC	2 cut(s)	664, 733
SfcI	CTRYAG	4 cut(s)	254, 311, 687, 747
SmlI	CTYRAG	2 cut(s)	242, 538
SmoI	CTYRAG	2 cut(s)	242, 538
Sse9I	AATT	2 cut(s)	524, 532
SsiI	CCGC	8 cut(s)	133, 142, 184, 226, 365, 543, 796, 858
SspMI	CTAG	1 cut(s)	785
StyD4I	CCNGG	1 cut(s)	264
TaaI	ACNGT	5 cut(s)	406, 653, 945, 986, 1006
TaiI	ACGT	3 cut(s)	465, 698, 756
TaqI	TCGA	4 cut(s)	353, 359, 466, 772
TasI	AATT	2 cut(s)	524, 532
TfiI	GAWTC	3 cut(s)	479, 662, 761
Tru1I	TTAA	1 cut(s)	633
Tru9I	TTAA	1 cut(s)	633
TscAI	CASTG	1 cut(s)	409
TseFI	GTSAC	1 cut(s)	700
TseI	GCWGC	6 cut(s)	151, 160, 172, 310, 686, 746
Tsp45I	GTSAC	1 cut(s)	700
TspDTI	ATGAA	2 cut(s)	774, 978
TspGWI	ACGGA	1 cut(s)	563
TspRI	CASTG	1 cut(s)	409
Tth111I	GACNNNGTC	1 cut(s)	349
VneI	GTGCAC	1 cut(s)	901
XapI	RAATTY	1 cut(s)	524
XmnI	GAANNNNTTC	2 cut(s)	462, 615
XspI	CTAG	1 cut(s)	785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.