Rw4G000340

Putative peptidoglycan binding domain

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
785938 .. 789759
3822 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G000340.1

Sequence Viewer

Length: 975 bp
ATGTCTTCTTCGTCTCTCACTCTCTTTCTTCACCCTCATCCTCCTCGTCTGAACCACCTCAAACCCAACCTCTACTCCCTCTCCTTCAAACCCCACATTTGCTTCTCTTCAAACTCCAACTCCCACCACGACGCCACCTCCGAAGACTCCCGCTGGCTCCGCGAAGAGCAGCGCTGGCTGCGCGAGGAGCAGCGCTGGCTCCGCGAAGAGCAACGCTGGGCGCGTGACCGCGACTCTCTCCTCCACGAAATCGCCGACCTTAAGCTCAAAATCCAGGCCCTGGAGCTCCAGAACCCTCTCCAGGCAGGCGCCTCGTCGGAGACTATTGCCAACATCGCCGGGTTGCTGCAGTCGCTGAAGGAGAAGAACCAGATTGCCGAGACGGGGTCGAGTTCCAGAGCGCTGGAGTTGGAAGATCATCATAATCAGGTGAAGGAGGTGTTCGCTGTTTCGGAAGTGAGGAAGACAAAGGAGGTTCTGAGAAAGGGTTCCGAAGGAGAACATGTTCGAGCAATGCAGGAAGCGTTGCTAAAATCGGGATTTTACTCGGGTGAAGAAGACATGGAATTTTCCAACTTCTCAAGCGGGACAGAACGGGCTGTCAAGACTTGGCAAGCCTCCATAGGTTTGCCTGAAGATGGAATAATGACCGAAGAACTTCTTGAAATATTATTTGACCCAAAAACTGAGGGTGCTGTTGAAACAAAGGAAGATGCAAATGGAGCTGCAGGAGAAAACCGCTGGGAAGAACCTTCAAGACTAAACAAGAAAAAAGGGAGTGAAACCAATACAACGGGTACCACAACAACATGCCTTACTTGCCGTGGGGAAGGTCGCTTATTGTGCACAGAATGTGATGGAACTGGTGAACCTAATATCGAGGAACAGTTCTTGGAATGGATCGATGAAGGAGCGAAGTGTCCATACTGTGAAGGTCTTGGGTTTACAGCTTGCGATGTATGTGGAGGGAAATAG

Protein Analysis

324

Amino Acids

36.37

Weight (kDa)

5.09

Isoelectric Point (pI)

60.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PG_binding_1 PF01471 166 - 224 4e-12 Putative peptidoglycan binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 797
AccB1I GGYRCC 2 cut(s) 308, 797
AccB7I CCANNNNNTGG 1 cut(s) 280
AccII CGCG 5 cut(s) 162, 183, 204, 223, 231
AciI CCGC 6 cut(s) 151, 160, 202, 229, 585, 739
AclWI GGATC 1 cut(s) 908
AcsI RAATTY 1 cut(s) 566
AcuI CTGAAG 2 cut(s) 377, 654
AcyI GRCGYC 2 cut(s) 132, 309
AfaI GTAC 1 cut(s) 799
AfeI AGCGCT 3 cut(s) 173, 194, 402
AfiI CCNNNNNNNGG 4 cut(s) 280, 301, 384, 638
AflII CTTAAG 1 cut(s) 260
AflIII ACRYGT 1 cut(s) 502
AgsI TTSAA 5 cut(s) 88, 111, 665, 701, 756
AjnI CCWGG 3 cut(s) 273, 279, 300
AloI GAACNNNNNNTCC 2 cut(s) 489, 521
AluBI AGCT 4 cut(s) 265, 286, 725, 950
AluI AGCT 4 cut(s) 265, 286, 725, 950
Alw21I GWGCWC 2 cut(s) 288, 848
Alw26I GTCTC 3 cut(s) 18, 314, 374
Alw44I GTGCAC 1 cut(s) 844
AlwI GGATC 1 cut(s) 908
AlwNI CAGNNNCTG 2 cut(s) 280, 355
Ama87I CYCGRG 1 cut(s) 547
Aor51HI AGCGCT 3 cut(s) 173, 194, 402
AoxI GGCC 1 cut(s) 276
ApaLI GTGCAC 1 cut(s) 844
ApeKI GCWGC 5 cut(s) 169, 178, 190, 346, 725
ApoI RAATTY 1 cut(s) 566
Asp700I GAANNNNTTC 3 cut(s) 487, 504, 657
Asp718I GGTACC 1 cut(s) 797
AspLEI GCGC 6 cut(s) 174, 183, 195, 223, 311, 403
AspS9I GGNCC 1 cut(s) 277
AsuC2I CCSGG 1 cut(s) 340
AsuHPI GGTGA 4 cut(s) 23, 442, 563, 878
AvaI CYCGRG 1 cut(s) 547
BaeGI GKGCMC 1 cut(s) 848
BanI GGYRCC 2 cut(s) 308, 797
BanII GRGCYC 1 cut(s) 288
BarI GAAGNNNNNNTAC 2 cut(s) 908, 940
BbsI GAAGAC 3 cut(s) 150, 470, 564
Bbv12I GWGCWC 2 cut(s) 288, 848
BbvI GCAGC 5 cut(s) 165, 181, 202, 333, 712
BccI CCATC 2 cut(s) 632, 851
BceAI ACGGC 1 cut(s) 807
BcgI CGANNNNNNTGC 2 cut(s) 294, 328
BciT130I CCWGG 3 cut(s) 275, 281, 302
BcnI CCSGG 1 cut(s) 340
BcoDI GTCTC 3 cut(s) 18, 314, 374
BfmI CTRYAG 2 cut(s) 347, 726
BfoI RGCGCY 4 cut(s) 175, 196, 312, 404
BfrI CTTAAG 1 cut(s) 260
BisI GCNGC 5 cut(s) 170, 179, 191, 347, 726
BlsI GCNGC 5 cut(s) 171, 180, 192, 348, 727
Bme1390I CCNGG 4 cut(s) 275, 281, 302, 340
BmeT110I CYCGRG 1 cut(s) 547
BmgT120I GGNCC 1 cut(s) 277
BmiI GGNNCC 5 cut(s) 158, 200, 310, 490, 799
BmrFI CCNGG 4 cut(s) 275, 281, 302, 340
BmsI GCATC 1 cut(s) 703
BpiI GAAGAC 3 cut(s) 150, 470, 564
BpmI CTGGAG 4 cut(s) 272, 284, 302, 425
BpuEI CTTGAG 1 cut(s) 565
BpuMI CCSGG 1 cut(s) 340
Bsa29I ATCGAT 1 cut(s) 903
BsaHI GRCGYC 2 cut(s) 132, 309
BsaJI CCNNGG 2 cut(s) 279, 823
Bsc4I CCNNNNNNNGG 4 cut(s) 280, 301, 384, 638
Bse1I ACTGG 1 cut(s) 868
Bse3DI GCAATG 1 cut(s) 519
BseBI CCWGG 3 cut(s) 275, 281, 302
BseCI ATCGAT 1 cut(s) 903
BseDI CCNNGG 2 cut(s) 279, 823
BseGI GGATG 1 cut(s) 37
BseLI CCNNNNNNNGG 4 cut(s) 280, 301, 384, 638
BseMI GCAATG 1 cut(s) 519
BseMII CTCAG 2 cut(s) 470, 678
BseNI ACTGG 1 cut(s) 868
BseRI GAGGAG 3 cut(s) 33, 200, 230
BseSI GKGCMC 1 cut(s) 848
BseXI GCAGC 5 cut(s) 165, 181, 202, 333, 712
BseYI CCCAGC 2 cut(s) 216, 741
Bsh1236I CGCG 5 cut(s) 162, 183, 204, 223, 231
BshFI GGCC 1 cut(s) 278
BshNI GGYRCC 2 cut(s) 308, 797
BshVI ATCGAT 1 cut(s) 903
BsiHKAI GWGCWC 2 cut(s) 288, 848
BsiHKCI CYCGRG 1 cut(s) 547
BsiSI CCGG 1 cut(s) 339
BslFI GGGAC 1 cut(s) 601
BslI CCNNNNNNNGG 4 cut(s) 280, 301, 384, 638
BsmAI GTCTC 3 cut(s) 18, 314, 374
BsmBI CGTCTC 2 cut(s) 18, 374
BsmFI GGGAC 1 cut(s) 601
BsnI GGCC 1 cut(s) 278
BsoBI CYCGRG 1 cut(s) 547
Bsp1286I GDGCHC 2 cut(s) 288, 848
Bsp143I GATC 2 cut(s) 415, 900
BspACI CCGC 6 cut(s) 151, 160, 202, 229, 585, 739
BspANI GGCC 1 cut(s) 278
BspCNI CTCAG 2 cut(s) 471, 679
BspDI ATCGAT 1 cut(s) 903
BspFNI CGCG 5 cut(s) 162, 183, 204, 223, 231
BspLI GGNNCC 5 cut(s) 158, 200, 310, 490, 799
BspMAI CTGCAG 2 cut(s) 351, 730
BspPI GGATC 1 cut(s) 908
BspQI GCTCTTC 2 cut(s) 159, 201
BspT107I GGYRCC 2 cut(s) 308, 797
BspTI CTTAAG 1 cut(s) 260
BsrDI GCAATG 1 cut(s) 519
BsrI ACTGG 1 cut(s) 868
BssECI CCNNGG 2 cut(s) 279, 823
BssMI GATC 2 cut(s) 415, 900
BssNI GRCGYC 2 cut(s) 132, 309
Bst2UI CCWGG 3 cut(s) 275, 281, 302
Bst4CI ACNGT 2 cut(s) 888, 929
Bst6I CTCTTC 3 cut(s) 112, 159, 201
BstACI GRCGYC 2 cut(s) 132, 309
BstAFI CTTAAG 1 cut(s) 260
BstC8I GCNNGC 6 cut(s) 155, 176, 197, 307, 615, 952
BstDEI CTNAG 2 cut(s) 479, 687
BstDSI CCRYGG 1 cut(s) 823
BstF5I GGATG 1 cut(s) 37
BstFNI CGCG 5 cut(s) 162, 183, 204, 223, 231
BstH2I RGCGCY 4 cut(s) 175, 196, 312, 404
BstHHI GCGC 6 cut(s) 174, 183, 195, 223, 311, 403
BstKTI GATC 2 cut(s) 418, 903
BstMAI GTCTC 3 cut(s) 18, 314, 374
BstMBI GATC 2 cut(s) 415, 900
BstNI CCWGG 3 cut(s) 275, 281, 302
BstNSI RCATGY 2 cut(s) 506, 813
BstSCI CCNGG 4 cut(s) 273, 279, 300, 338
BstSFI CTRYAG 2 cut(s) 347, 726
BstSLI GKGCMC 1 cut(s) 848
BstUI CGCG 5 cut(s) 162, 183, 204, 223, 231
BstV1I GCAGC 5 cut(s) 165, 181, 202, 333, 712
BstV2I GAAGAC 3 cut(s) 150, 470, 564
BstXI CCANNNNNNTGG 1 cut(s) 403
Bsu15I ATCGAT 1 cut(s) 903
BsuRI GGCC 1 cut(s) 278
BsuTUI ATCGAT 1 cut(s) 903
BtgI CCRYGG 1 cut(s) 823
BtgZI GCGATG 2 cut(s) 319, 969
BtsCI GGATG 1 cut(s) 37
Cac8I GCNNGC 6 cut(s) 155, 176, 197, 307, 615, 952
CaiI CAGNNNCTG 2 cut(s) 280, 355
CfoI GCGC 6 cut(s) 174, 183, 195, 223, 311, 403
Cfr13I GGNCC 1 cut(s) 277
ClaI ATCGAT 1 cut(s) 903
CseI GACGC 1 cut(s) 140
Csp6I GTAC 1 cut(s) 798
CviAII CATG 3 cut(s) 503, 562, 810
CviQI GTAC 1 cut(s) 798
DdeI CTNAG 2 cut(s) 479, 687
DinI GGCGCC 1 cut(s) 310
DpnI GATC 2 cut(s) 417, 902
DpnII GATC 2 cut(s) 415, 900
Eam1104I CTCTTC 3 cut(s) 112, 159, 201
EarI CTCTTC 3 cut(s) 112, 159, 201
Ecl136II GAGCTC 1 cut(s) 286
Eco24I GRGCYC 1 cut(s) 288
Eco47III AGCGCT 3 cut(s) 173, 194, 402
Eco53kI GAGCTC 1 cut(s) 286
Eco57I CTGAAG 2 cut(s) 377, 654
Eco88I CYCGRG 1 cut(s) 547
EcoICRI GAGCTC 1 cut(s) 286
EcoO109I RGGNCCY 1 cut(s) 277
EcoRII CCWGG 3 cut(s) 273, 279, 300
EcoT38I GRGCYC 1 cut(s) 288
EgeI GGCGCC 1 cut(s) 310
EheI GGCGCC 1 cut(s) 310
Esp3I CGTCTC 2 cut(s) 18, 374
FaeI CATG 3 cut(s) 506, 565, 813
FaiI YATR 7 cut(s) 423, 504, 563, 623, 811, 925, 961
FalI AAGNNNNNCTT 2 cut(s) 645, 677
FaqI GGGAC 1 cut(s) 601
FatI CATG 3 cut(s) 502, 561, 809
FauI CCCGC 2 cut(s) 158, 578
Fnu4HI GCNGC 5 cut(s) 170, 179, 191, 347, 726
FokI GGATG 1 cut(s) 24
FriOI GRGCYC 1 cut(s) 288
Fsp4HI GCNGC 5 cut(s) 170, 179, 191, 347, 726
GlaI GCGC 6 cut(s) 173, 182, 194, 222, 310, 402
GluI GCNGC 5 cut(s) 170, 179, 191, 347, 726
GsaI CCCAGC 2 cut(s) 220, 745
GsuI CTGGAG 4 cut(s) 272, 284, 302, 425
HaeII RGCGCY 4 cut(s) 175, 196, 312, 404
HaeIII GGCC 1 cut(s) 278
HapII CCGG 1 cut(s) 339
HgaI GACGC 1 cut(s) 140
HhaI GCGC 6 cut(s) 174, 183, 195, 223, 311, 403
Hin1I GRCGYC 2 cut(s) 132, 309
Hin1II CATG 3 cut(s) 506, 565, 813
Hin6I GCGC 6 cut(s) 172, 181, 193, 221, 309, 401
HinP1I GCGC 6 cut(s) 172, 181, 193, 221, 309, 401
HinfI GANTC 2 cut(s) 146, 233
HpaII CCGG 1 cut(s) 339
HphI GGTGA 4 cut(s) 23, 442, 563, 878
Hpy166II GTNNAC 3 cut(s) 846, 869, 945
Hpy188I TCNGA 6 cut(s) 51, 142, 319, 454, 480, 493
Hpy188III TCNNGA 6 cut(s) 289, 396, 537, 604, 662, 756
Hpy8I GTNNAC 3 cut(s) 846, 869, 945
Hpy99I CGWCG 2 cut(s) 134, 319
HpyAV CCTTC 8 cut(s) 94, 352, 427, 488, 762, 824, 902, 926
HpyCH4III ACNGT 2 cut(s) 888, 929
HpyCH4V TGCA 5 cut(s) 349, 517, 716, 728, 846
HpyF3I CTNAG 2 cut(s) 479, 687
Hsp92I GRCGYC 2 cut(s) 132, 309
Hsp92II CATG 3 cut(s) 506, 565, 813
HspAI GCGC 6 cut(s) 172, 181, 193, 221, 309, 401
KasI GGCGCC 1 cut(s) 308
KpnI GGTACC 1 cut(s) 801
Kzo9I GATC 2 cut(s) 415, 900
LguI GCTCTTC 2 cut(s) 159, 201
LmnI GCTCC 7 cut(s) 162, 187, 204, 283, 291, 722, 911
Lsp1109I GCAGC 5 cut(s) 165, 181, 202, 333, 712
LweI GCATC 1 cut(s) 703
MaeIII GTNAC 1 cut(s) 224
MalI GATC 2 cut(s) 417, 902
MboI GATC 2 cut(s) 415, 900
MhlI GDGCHC 2 cut(s) 288, 848
MluCI AATT 1 cut(s) 566
Mly113I GGCGCC 1 cut(s) 309
MlyI GAGTC 2 cut(s) 140, 227
MmeI TCCRAC 4 cut(s) 141, 297, 390, 597
MroXI GAANNNNTTC 3 cut(s) 487, 504, 657
MseI TTAA 1 cut(s) 261
MspA1I CMGCKG 2 cut(s) 153, 741
MspCI CTTAAG 1 cut(s) 260
MspI CCGG 1 cut(s) 339
MspR9I CCNGG 4 cut(s) 275, 281, 302, 340
MvaI CCWGG 3 cut(s) 275, 281, 302
MvnI CGCG 5 cut(s) 162, 183, 204, 223, 231
NarI GGCGCC 1 cut(s) 309
NciI CCSGG 1 cut(s) 340
NdeII GATC 2 cut(s) 415, 900
NlaIII CATG 3 cut(s) 506, 565, 813
NlaIV GGNNCC 5 cut(s) 158, 200, 310, 490, 799
NmeAIII GCCGAG 1 cut(s) 403
NmuCI GTSAC 1 cut(s) 224
NspI RCATGY 2 cut(s) 506, 813
PciI ACATGT 1 cut(s) 502
PciSI GCTCTTC 2 cut(s) 159, 201
PcsI WCGNNNNNNNCGW 3 cut(s) 138, 220, 252
PdmI GAANNNNTTC 3 cut(s) 487, 504, 657
PflFI GACNNNGTC 1 cut(s) 385
PflMI CCANNNNNTGG 1 cut(s) 280
PkrI GCNGC 5 cut(s) 171, 180, 192, 348, 727
PleI GAGTC 2 cut(s) 140, 227
PluTI GGCGCC 1 cut(s) 312
PpsI GAGTC 2 cut(s) 140, 227
PscI ACATGT 1 cut(s) 502
Psp124BI GAGCTC 1 cut(s) 288
Psp6I CCWGG 3 cut(s) 273, 279, 300
PspFI CCCAGC 2 cut(s) 216, 741
PspGI CCWGG 3 cut(s) 273, 279, 300
PspN4I GGNNCC 5 cut(s) 158, 200, 310, 490, 799
PspPI GGNCC 1 cut(s) 277
PstI CTGCAG 2 cut(s) 351, 730
PstNI CAGNNNCTG 2 cut(s) 280, 355
PsyI GACNNNGTC 1 cut(s) 385
RsaI GTAC 1 cut(s) 799
RsaNI GTAC 1 cut(s) 798
SacI GAGCTC 1 cut(s) 288
SapI GCTCTTC 2 cut(s) 159, 201
SaqAI TTAA 1 cut(s) 261
SatI GCNGC 5 cut(s) 170, 179, 191, 347, 726
Sau3AI GATC 2 cut(s) 415, 900
Sau96I GGNCC 1 cut(s) 277
SchI GAGTC 2 cut(s) 140, 227
ScrFI CCNGG 4 cut(s) 275, 281, 302, 340
SduI GDGCHC 2 cut(s) 288, 848
SfaNI GCATC 1 cut(s) 703
SfcI CTRYAG 2 cut(s) 347, 726
SfoI GGCGCC 1 cut(s) 310
SmlI CTYRAG 2 cut(s) 260, 580
SmoI CTYRAG 2 cut(s) 260, 580
Sse9I AATT 1 cut(s) 566
SsiI CCGC 6 cut(s) 151, 160, 202, 229, 585, 739
SspDI GGCGCC 1 cut(s) 308
SspI AATATT 1 cut(s) 669
SstI GAGCTC 1 cut(s) 288
StyD4I CCNGG 4 cut(s) 273, 279, 300, 338
TaaI ACNGT 2 cut(s) 888, 929
TaqI TCGA 4 cut(s) 389, 508, 879, 903
TaqII GACCGA 1 cut(s) 665
TasI AATT 1 cut(s) 566
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TseFI GTSAC 1 cut(s) 224
TseI GCWGC 5 cut(s) 169, 178, 190, 346, 725
Tsp45I GTSAC 1 cut(s) 224
TspDTI ATGAA 1 cut(s) 921
Tth111I GACNNNGTC 1 cut(s) 385
Van91I CCANNNNNTGG 1 cut(s) 280
Vha464I CTTAAG 1 cut(s) 260
VneI GTGCAC 1 cut(s) 844
XapI RAATTY 1 cut(s) 566
XceI RCATGY 2 cut(s) 506, 813
XmnI GAANNNNTTC 3 cut(s) 487, 504, 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.