Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0007818

Physical Location & Seq

Genomic Coordinates Reverse (-)

869925 .. 872659

Gene Structure 2735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG004700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGACCGAAGAACTTCTTGAAAGATTATTTGACCCACAAACTGAGGGTGCTGTTGAAACAAAGGAAGATGCAAATGGAGCTGCAGGTACGTCTGTAACAGAAATTTCAGAGGTGAAGCAAATAGTATTGAAAGAAGATGCTGCCGAGGTAGATGAATCTCACCATAGAGTTTTTCTTCTAGGAGAAAACCGCTGGGAAGAACCTTCAAGACTAAACAAGAAAAAAGGGAGTGAAACCAATACAACAGGTACCACAACAACATGCCTTACTTGCCGTGGGGAAGGTCGCTTATTGTGCACAGAATGTGATGGAACTGGTGAACCTAACATCGAGGAACAGTTCTTGGAATGGATCGATGAAGGAGCAAAGTGTCCATACTGTGAAGGTCTTGGGTTTACAGCTTGCGATGTATGTGGAGGGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0006139 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009295 GO:0009314 GO:0009408 GO:0009416 GO:0009507 GO:0009508 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009657 GO:0009658 GO:0009889 GO:0009941 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016020 GO:0016043 GO:0016070 GO:0016853 GO:0016860 GO:0016864 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032774 GO:0034357 GO:0034641 GO:0034645 GO:0034654 GO:0042644 GO:0042646 GO:0042651 GO:0042793 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055035 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:0140096 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PG_binding_1

Protein Analysis

141

Amino Acids

15.44

Weight (kDa)

4.42

Isoelectric Point (pI)

52.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13670 AT4G13670 AT4G13670 AT4G13670
fragaria_vesca	FvH4_4g00470 FvH4_4g00470
malus_domestica	MD04G1005000.v1.1
prunus_persica	Prupe.1G004900_v2.0.a1 Prupe.3G076100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0385901
rosa_laevigata	RLG00000010204
rosa_multiflora	Rmu_co7989456.1_g000001 Rmu_sc0007400.1_g000001 Rmu_sc0008728.1_g000006
rosa_roxburghii	Rroxscaffold_5G00333490
rosa_rugosa	Rorug03G0302300 Rorug03G0302400 Rorug03G0302500
rosa_samantha	Rh4AG007100 Rh4BG004700 Rh4BG004800 Rh4CG007700 Rh4DG006700
rosa_wichuraiana	Rw4G000340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	74
Acc65I	GGTACC	1 cut(s)	248
AccB1I	GGYRCC	1 cut(s)	248
AciI	CCGC	1 cut(s)	190
AclWI	GGATC	1 cut(s)	359
AcsI	RAATTY	1 cut(s)	102
AfaI	GTAC	2 cut(s)	88, 250
AgsI	TTSAA	4 cut(s)	20, 56, 130, 207
AluBI	AGCT	2 cut(s)	80, 401
AluI	AGCT	2 cut(s)	80, 401
Alw21I	GWGCWC	1 cut(s)	299
Alw44I	GTGCAC	1 cut(s)	295
AlwI	GGATC	1 cut(s)	359
ApaLI	GTGCAC	1 cut(s)	295
ApeKI	GCWGC	2 cut(s)	80, 140
ApoI	RAATTY	1 cut(s)	102
Asp700I	GAANNNNTTC	1 cut(s)	12
Asp718I	GGTACC	1 cut(s)	248
AsuHPI	GGTGA	3 cut(s)	124, 152, 329
BaeGI	GKGCMC	1 cut(s)	299
BaeI	ACNNNNGTAYC	2 cut(s)	78, 111
BanI	GGYRCC	1 cut(s)	248
Bbv12I	GWGCWC	1 cut(s)	299
BbvI	GCAGC	2 cut(s)	67, 127
BccI	CCATC	1 cut(s)	302
BceAI	ACGGC	1 cut(s)	258
BfaI	CTAG	1 cut(s)	179
BfmI	CTRYAG	1 cut(s)	81
BfuAI	ACCTGC	1 cut(s)	74
BisI	GCNGC	2 cut(s)	81, 141
BlsI	GCNGC	2 cut(s)	82, 142
BmiI	GGNNCC	1 cut(s)	250
BmsI	GCATC	2 cut(s)	58, 127
Bsa29I	ATCGAT	1 cut(s)	354
BsaJI	CCNNGG	2 cut(s)	144, 274
Bse1I	ACTGG	1 cut(s)	319
BseCI	ATCGAT	1 cut(s)	354
BseDI	CCNNGG	2 cut(s)	144, 274
BseMII	CTCAG	1 cut(s)	33
BseNI	ACTGG	1 cut(s)	319
BseSI	GKGCMC	1 cut(s)	299
BseXI	GCAGC	2 cut(s)	67, 127
BseYI	CCCAGC	1 cut(s)	192
BshNI	GGYRCC	1 cut(s)	248
BshVI	ATCGAT	1 cut(s)	354
BsiHKAI	GWGCWC	1 cut(s)	299
Bsp1286I	GDGCHC	1 cut(s)	299
Bsp143I	GATC	1 cut(s)	351
BspACI	CCGC	1 cut(s)	190
BspCNI	CTCAG	1 cut(s)	34
BspDI	ATCGAT	1 cut(s)	354
BspLI	GGNNCC	1 cut(s)	250
BspMAI	CTGCAG	1 cut(s)	85
BspMI	ACCTGC	1 cut(s)	74
BspPI	GGATC	1 cut(s)	359
BspT107I	GGYRCC	1 cut(s)	248
BsrI	ACTGG	1 cut(s)	319
BssECI	CCNNGG	2 cut(s)	144, 274
BssMI	GATC	1 cut(s)	351
Bst4CI	ACNGT	2 cut(s)	339, 380
BstC8I	GCNNGC	1 cut(s)	403
BstDEI	CTNAG	1 cut(s)	42
BstDSI	CCRYGG	1 cut(s)	274
BstKTI	GATC	1 cut(s)	354
BstMBI	GATC	1 cut(s)	351
BstMWI	GCNNNNNNNGC	3 cut(s)	77, 270, 294
BstNSI	RCATGY	1 cut(s)	264
BstSFI	CTRYAG	1 cut(s)	81
BstSLI	GKGCMC	1 cut(s)	299
BstV1I	GCAGC	2 cut(s)	67, 127
Bsu15I	ATCGAT	1 cut(s)	354
BsuTUI	ATCGAT	1 cut(s)	354
BtgI	CCRYGG	1 cut(s)	274
BtgZI	GCGATG	1 cut(s)	420
BveI	ACCTGC	1 cut(s)	74
Cac8I	GCNNGC	1 cut(s)	403
ClaI	ATCGAT	1 cut(s)	354
Csp6I	GTAC	2 cut(s)	87, 249
CviAII	CATG	1 cut(s)	261
CviJI	RGCY	2 cut(s)	80, 401
CviKI_1	RGCY	2 cut(s)	80, 401
CviQI	GTAC	2 cut(s)	87, 249
DdeI	CTNAG	1 cut(s)	42
DpnI	GATC	1 cut(s)	353
DpnII	GATC	1 cut(s)	351
FaeI	CATG	1 cut(s)	264
FaiI	YATR	4 cut(s)	165, 262, 376, 412
FalI	AAGNNNNNCTT	1 cut(s)	32
FatI	CATG	1 cut(s)	260
Fnu4HI	GCNGC	2 cut(s)	81, 141
Fsp4HI	GCNGC	2 cut(s)	81, 141
FspBI	CTAG	1 cut(s)	179
GluI	GCNGC	2 cut(s)	81, 141
GsaI	CCCAGC	1 cut(s)	196
Hin1II	CATG	1 cut(s)	264
HinfI	GANTC	1 cut(s)	155
HphI	GGTGA	3 cut(s)	124, 152, 329
Hpy166II	GTNNAC	3 cut(s)	297, 320, 396
Hpy188I	TCNGA	1 cut(s)	109
Hpy188III	TCNNGA	2 cut(s)	17, 207
Hpy8I	GTNNAC	3 cut(s)	297, 320, 396
HpyAV	CCTTC	4 cut(s)	213, 275, 353, 377
HpyCH4III	ACNGT	2 cut(s)	339, 380
HpyCH4IV	ACGT	1 cut(s)	89
HpyCH4V	TGCA	3 cut(s)	71, 83, 297
HpyF10VI	GCNNNNNNNGC	3 cut(s)	77, 270, 294
HpyF3I	CTNAG	1 cut(s)	42
HpySE526I	ACGT	1 cut(s)	89
Hsp92II	CATG	1 cut(s)	264
KpnI	GGTACC	1 cut(s)	252
Kzo9I	GATC	1 cut(s)	351
LmnI	GCTCC	2 cut(s)	77, 362
LpnPI	CCDG	4 cut(s)	69, 178, 231, 300
Lsp1109I	GCAGC	2 cut(s)	67, 127
LweI	GCATC	2 cut(s)	58, 127
MaeI	CTAG	1 cut(s)	179
MaeII	ACGT	1 cut(s)	89
MaeIII	GTNAC	1 cut(s)	94
MalI	GATC	1 cut(s)	353
MboI	GATC	1 cut(s)	351
MboII	GAAGA	5 cut(s)	20, 77, 146, 167, 209
MhlI	GDGCHC	1 cut(s)	299
MluCI	AATT	1 cut(s)	102
MnlI	CCTC	5 cut(s)	37, 103, 139, 325, 410
MroXI	GAANNNNTTC	1 cut(s)	12
MspA1I	CMGCKG	1 cut(s)	192
MwoI	GCNNNNNNNGC	3 cut(s)	77, 270, 294
NdeII	GATC	1 cut(s)	351
NlaIII	CATG	1 cut(s)	264
NlaIV	GGNNCC	1 cut(s)	250
NmeAIII	GCCGAG	1 cut(s)	169
NspI	RCATGY	1 cut(s)	264
PdmI	GAANNNNTTC	1 cut(s)	12
PfeI	GAWTC	1 cut(s)	155
PkrI	GCNGC	2 cut(s)	82, 142
PspFI	CCCAGC	1 cut(s)	192
PspN4I	GGNNCC	1 cut(s)	250
PstI	CTGCAG	1 cut(s)	85
RsaI	GTAC	2 cut(s)	88, 250
RsaNI	GTAC	2 cut(s)	87, 249
SatI	GCNGC	2 cut(s)	81, 141
Sau3AI	GATC	1 cut(s)	351
SduI	GDGCHC	1 cut(s)	299
SfaNI	GCATC	2 cut(s)	58, 127
SfcI	CTRYAG	1 cut(s)	81
Sse9I	AATT	1 cut(s)	102
SsiI	CCGC	1 cut(s)	190
SspMI	CTAG	1 cut(s)	179
TaaI	ACNGT	2 cut(s)	339, 380
TaiI	ACGT	1 cut(s)	92
TaqI	TCGA	2 cut(s)	330, 354
TaqII	GACCGA	1 cut(s)	20
TasI	AATT	1 cut(s)	102
TfiI	GAWTC	1 cut(s)	155
TseI	GCWGC	2 cut(s)	80, 140
TspDTI	ATGAA	2 cut(s)	168, 372
VneI	GTGCAC	1 cut(s)	295
XapI	RAATTY	1 cut(s)	102
XceI	RCATGY	1 cut(s)	264
XmnI	GAANNNNTTC	1 cut(s)	12
XspI	CTAG	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.