Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0007818

Physical Location & Seq

Genomic Coordinates Reverse (-)

1417942 .. 1422067

Gene Structure 4126 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG007700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGTCTTCTTCGTCTCTCACTCTCTTTCTTCACCCTCATCCTCCTCGTCTGAACCACCTCAAACCCAACCTCTACTCCCTCTCCTTCAAACCCCACATTTGCTTCTCTTCAAACTCCAACTCCCACCACGACGCCACCTACGAAGACTCCCGCTGGCTCCGCGAAGAGCAGCGCTGGCTGCGAGAGGAGCAGCGCTGGCTCCGCGAAGAGCAGCGCTGGGCGCGTGACCGCGACTCTCTCCTCCGCGAAATCGCCGACCTTAAGCTCAAAATCCAGGCCCTGGAGCTCCAGAACCCTCTCCAGGCAGGCGCCTCGTCGGAGACTATTGCCAACATCGCCGGGTTGCTGCAGTCGCTGAAGGAGAAGAACCAGATTGCCGAGACGGGGTCGAGTTCCAGAGCGCTGGAGTTGGAAGATCATCATAATCAGGTGAAGGAGGTGTTCGCTGTTTCGGAAGTGAGGAAGACAAAGGAGGTTCTGAGAAAGGGTTCCGAAGGAGAACATGTTCGAGCAATGCAGGAAGCGTTGCTAAAATCAGGATTTTACTCGGGTGAAGAAGACATGGAATTTTCCAACTTCTCAAGCGGGACAGAACGGGCTGTCAAGACTTGGCAAGCCTCCATAGGTTTGCCTGAAGATGGAATAATGACCGAAGAACTTCTTGAAATATTATTTGACCCAAAAACTGAGGGTGCTGTTGAAACAAAGGTATGTTGGATTCATGAGGTTTCAGGATACATTTGTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0006139 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009295 GO:0009314 GO:0009408 GO:0009416 GO:0009507 GO:0009508 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009657 GO:0009658 GO:0009889 GO:0009941 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016020 GO:0016043 GO:0016070 GO:0016853 GO:0016860 GO:0016864 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032774 GO:0034357 GO:0034641 GO:0034645 GO:0034654 GO:0042644 GO:0042646 GO:0042651 GO:0042793 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055035 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:0140096 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PG_binding_1

Protein Analysis

249

Amino Acids

28.53

Weight (kDa)

5.53

Isoelectric Point (pI)

59.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PG_binding_1	PF01471	166 - 224	2.5e-12	Putative peptidoglycan binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13670 AT4G13670 AT4G13670 AT4G13670
fragaria_vesca	FvH4_4g00470 FvH4_4g00470
malus_domestica	MD04G1005000.v1.1
prunus_persica	Prupe.1G004900_v2.0.a1 Prupe.3G076100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0385901
rosa_laevigata	RLG00000010204
rosa_multiflora	Rmu_co7989456.1_g000001 Rmu_sc0007400.1_g000001 Rmu_sc0008728.1_g000006
rosa_roxburghii	Rroxscaffold_5G00333490
rosa_rugosa	Rorug03G0302300 Rorug03G0302400 Rorug03G0302500
rosa_samantha	Rh4AG007100 Rh4BG004700 Rh4BG004800 Rh4CG007700 Rh4DG006700
rosa_wichuraiana	Rw4G000340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	308
AccB7I	CCANNNNNTGG	1 cut(s)	280
AccII	CGCG	5 cut(s)	162, 204, 223, 231, 246
AciI	CCGC	6 cut(s)	151, 160, 202, 229, 244, 585
AcsI	RAATTY	1 cut(s)	566
AcuI	CTGAAG	2 cut(s)	377, 654
AcyI	GRCGYC	2 cut(s)	132, 309
AfeI	AGCGCT	4 cut(s)	173, 194, 215, 402
AfiI	CCNNNNNNNGG	4 cut(s)	280, 301, 384, 638
AflII	CTTAAG	1 cut(s)	260
AflIII	ACRYGT	1 cut(s)	502
AgsI	TTSAA	4 cut(s)	88, 111, 665, 701
AjnI	CCWGG	3 cut(s)	273, 279, 300
AloI	GAACNNNNNNTCC	2 cut(s)	489, 521
AluBI	AGCT	2 cut(s)	265, 286
AluI	AGCT	2 cut(s)	265, 286
Alw21I	GWGCWC	1 cut(s)	288
Alw26I	GTCTC	3 cut(s)	18, 314, 374
AlwNI	CAGNNNCTG	2 cut(s)	280, 355
Ama87I	CYCGRG	1 cut(s)	547
Aor51HI	AGCGCT	4 cut(s)	173, 194, 215, 402
AoxI	GGCC	1 cut(s)	276
ApeKI	GCWGC	5 cut(s)	169, 178, 190, 211, 346
ApoI	RAATTY	1 cut(s)	566
Asp700I	GAANNNNTTC	3 cut(s)	487, 504, 657
AspLEI	GCGC	6 cut(s)	174, 195, 216, 223, 311, 403
AspS9I	GGNCC	1 cut(s)	277
AsuC2I	CCSGG	1 cut(s)	340
AsuHPI	GGTGA	3 cut(s)	23, 442, 563
AvaI	CYCGRG	1 cut(s)	547
BaeI	ACNNNNGTAYC	1 cut(s)	727
BanI	GGYRCC	1 cut(s)	308
BanII	GRGCYC	1 cut(s)	288
BbsI	GAAGAC	3 cut(s)	150, 470, 564
Bbv12I	GWGCWC	1 cut(s)	288
BbvI	GCAGC	5 cut(s)	165, 181, 202, 223, 333
BccI	CCATC	1 cut(s)	632
BcgI	CGANNNNNNTGC	2 cut(s)	294, 328
BciT130I	CCWGG	3 cut(s)	275, 281, 302
BciVI	GTATCC	1 cut(s)	728
BcnI	CCSGG	1 cut(s)	340
BcoDI	GTCTC	3 cut(s)	18, 314, 374
BfmI	CTRYAG	1 cut(s)	347
BfoI	RGCGCY	5 cut(s)	175, 196, 217, 312, 404
BfrI	CTTAAG	1 cut(s)	260
BfuI	GTATCC	1 cut(s)	728
BisI	GCNGC	5 cut(s)	170, 179, 191, 212, 347
BlsI	GCNGC	5 cut(s)	171, 180, 192, 213, 348
Bme1390I	CCNGG	4 cut(s)	275, 281, 302, 340
BmeT110I	CYCGRG	1 cut(s)	547
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	4 cut(s)	158, 200, 310, 490
BmrFI	CCNGG	4 cut(s)	275, 281, 302, 340
BpiI	GAAGAC	3 cut(s)	150, 470, 564
BpmI	CTGGAG	4 cut(s)	272, 284, 302, 425
BpuEI	CTTGAG	1 cut(s)	565
BpuMI	CCSGG	1 cut(s)	340
BsaHI	GRCGYC	2 cut(s)	132, 309
BsaJI	CCNNGG	1 cut(s)	279
Bsc4I	CCNNNNNNNGG	4 cut(s)	280, 301, 384, 638
Bse3DI	GCAATG	1 cut(s)	519
BseBI	CCWGG	3 cut(s)	275, 281, 302
BseDI	CCNNGG	1 cut(s)	279
BseGI	GGATG	1 cut(s)	37
BseLI	CCNNNNNNNGG	4 cut(s)	280, 301, 384, 638
BseMI	GCAATG	1 cut(s)	519
BseMII	CTCAG	2 cut(s)	470, 678
BseRI	GAGGAG	3 cut(s)	33, 200, 230
BseXI	GCAGC	5 cut(s)	165, 181, 202, 223, 333
BseYI	CCCAGC	1 cut(s)	216
Bsh1236I	CGCG	5 cut(s)	162, 204, 223, 231, 246
BshFI	GGCC	1 cut(s)	278
BshNI	GGYRCC	1 cut(s)	308
BsiHKAI	GWGCWC	1 cut(s)	288
BsiHKCI	CYCGRG	1 cut(s)	547
BsiSI	CCGG	1 cut(s)	339
BslFI	GGGAC	1 cut(s)	601
BslI	CCNNNNNNNGG	4 cut(s)	280, 301, 384, 638
BsmAI	GTCTC	3 cut(s)	18, 314, 374
BsmBI	CGTCTC	2 cut(s)	18, 374
BsmFI	GGGAC	1 cut(s)	601
BsnI	GGCC	1 cut(s)	278
BsoBI	CYCGRG	1 cut(s)	547
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp143I	GATC	1 cut(s)	415
BspACI	CCGC	6 cut(s)	151, 160, 202, 229, 244, 585
BspANI	GGCC	1 cut(s)	278
BspCNI	CTCAG	2 cut(s)	471, 679
BspFNI	CGCG	5 cut(s)	162, 204, 223, 231, 246
BspHI	TCATGA	1 cut(s)	721
BspLI	GGNNCC	4 cut(s)	158, 200, 310, 490
BspMAI	CTGCAG	1 cut(s)	351
BspQI	GCTCTTC	2 cut(s)	159, 201
BspT107I	GGYRCC	1 cut(s)	308
BspTI	CTTAAG	1 cut(s)	260
BsrDI	GCAATG	1 cut(s)	519
BssECI	CCNNGG	1 cut(s)	279
BssMI	GATC	1 cut(s)	415
BssNI	GRCGYC	2 cut(s)	132, 309
Bst2UI	CCWGG	3 cut(s)	275, 281, 302
Bst6I	CTCTTC	3 cut(s)	112, 159, 201
BstACI	GRCGYC	2 cut(s)	132, 309
BstAFI	CTTAAG	1 cut(s)	260
BstC8I	GCNNGC	5 cut(s)	155, 176, 197, 307, 615
BstDEI	CTNAG	2 cut(s)	479, 687
BstF5I	GGATG	1 cut(s)	37
BstFNI	CGCG	5 cut(s)	162, 204, 223, 231, 246
BstH2I	RGCGCY	5 cut(s)	175, 196, 217, 312, 404
BstHHI	GCGC	6 cut(s)	174, 195, 216, 223, 311, 403
BstKTI	GATC	1 cut(s)	418
BstMAI	GTCTC	3 cut(s)	18, 314, 374
BstMBI	GATC	1 cut(s)	415
BstMWI	GCNNNNNNNGC	9 cut(s)	159, 175, 178, 187, 196, 201, 220, 335, 352
BstNI	CCWGG	3 cut(s)	275, 281, 302
BstNSI	RCATGY	1 cut(s)	506
BstSCI	CCNGG	4 cut(s)	273, 279, 300, 338
BstSFI	CTRYAG	1 cut(s)	347
BstUI	CGCG	5 cut(s)	162, 204, 223, 231, 246
BstV1I	GCAGC	5 cut(s)	165, 181, 202, 223, 333
BstV2I	GAAGAC	3 cut(s)	150, 470, 564
BstXI	CCANNNNNNTGG	1 cut(s)	403
BsuI	GTATCC	1 cut(s)	728
BsuRI	GGCC	1 cut(s)	278
BtgZI	GCGATG	1 cut(s)	319
BtsCI	GGATG	1 cut(s)	37
Cac8I	GCNNGC	5 cut(s)	155, 176, 197, 307, 615
CaiI	CAGNNNCTG	2 cut(s)	280, 355
CciI	TCATGA	1 cut(s)	721
CfoI	GCGC	6 cut(s)	174, 195, 216, 223, 311, 403
Cfr13I	GGNCC	1 cut(s)	277
CseI	GACGC	1 cut(s)	140
CviAII	CATG	3 cut(s)	503, 562, 722
CviJI	RGCY	8 cut(s)	157, 178, 199, 265, 278, 286, 599, 617
CviKI_1	RGCY	8 cut(s)	157, 178, 199, 265, 278, 286, 599, 617
DdeI	CTNAG	2 cut(s)	479, 687
DinI	GGCGCC	1 cut(s)	310
DpnI	GATC	1 cut(s)	417
DpnII	GATC	1 cut(s)	415
Eam1104I	CTCTTC	3 cut(s)	112, 159, 201
EarI	CTCTTC	3 cut(s)	112, 159, 201
Ecl136II	GAGCTC	1 cut(s)	286
Eco24I	GRGCYC	1 cut(s)	288
Eco47III	AGCGCT	4 cut(s)	173, 194, 215, 402
Eco53kI	GAGCTC	1 cut(s)	286
Eco57I	CTGAAG	2 cut(s)	377, 654
Eco88I	CYCGRG	1 cut(s)	547
EcoICRI	GAGCTC	1 cut(s)	286
EcoO109I	RGGNCCY	1 cut(s)	277
EcoRII	CCWGG	3 cut(s)	273, 279, 300
EcoT38I	GRGCYC	1 cut(s)	288
EgeI	GGCGCC	1 cut(s)	310
EheI	GGCGCC	1 cut(s)	310
Esp3I	CGTCTC	2 cut(s)	18, 374
FaeI	CATG	3 cut(s)	506, 565, 725
FaiI	YATR	6 cut(s)	423, 504, 563, 623, 712, 723
FalI	AAGNNNNNCTT	2 cut(s)	645, 677
FaqI	GGGAC	1 cut(s)	601
FatI	CATG	3 cut(s)	502, 561, 721
FauI	CCCGC	2 cut(s)	158, 578
Fnu4HI	GCNGC	5 cut(s)	170, 179, 191, 212, 347
FokI	GGATG	1 cut(s)	24
FriOI	GRGCYC	1 cut(s)	288
Fsp4HI	GCNGC	5 cut(s)	170, 179, 191, 212, 347
GlaI	GCGC	6 cut(s)	173, 194, 215, 222, 310, 402
GluI	GCNGC	5 cut(s)	170, 179, 191, 212, 347
GsaI	CCCAGC	1 cut(s)	220
GsuI	CTGGAG	4 cut(s)	272, 284, 302, 425
HaeII	RGCGCY	5 cut(s)	175, 196, 217, 312, 404
HaeIII	GGCC	1 cut(s)	278
HapII	CCGG	1 cut(s)	339
HgaI	GACGC	1 cut(s)	140
HhaI	GCGC	6 cut(s)	174, 195, 216, 223, 311, 403
Hin1I	GRCGYC	2 cut(s)	132, 309
Hin1II	CATG	3 cut(s)	506, 565, 725
Hin6I	GCGC	6 cut(s)	172, 193, 214, 221, 309, 401
HinP1I	GCGC	6 cut(s)	172, 193, 214, 221, 309, 401
HinfI	GANTC	3 cut(s)	146, 233, 718
HpaII	CCGG	1 cut(s)	339
HphI	GGTGA	3 cut(s)	23, 442, 563
Hpy188I	TCNGA	5 cut(s)	51, 319, 454, 480, 493
Hpy188III	TCNNGA	7 cut(s)	289, 396, 537, 604, 662, 722, 732
Hpy99I	CGWCG	2 cut(s)	134, 319
HpyAV	CCTTC	4 cut(s)	94, 352, 427, 488
HpyCH4V	TGCA	2 cut(s)	349, 517
HpyF10VI	GCNNNNNNNGC	9 cut(s)	159, 175, 178, 187, 196, 201, 220, 335, 352
HpyF3I	CTNAG	2 cut(s)	479, 687
Hsp92I	GRCGYC	2 cut(s)	132, 309
Hsp92II	CATG	3 cut(s)	506, 565, 725
HspAI	GCGC	6 cut(s)	172, 193, 214, 221, 309, 401
KasI	GGCGCC	1 cut(s)	308
Kzo9I	GATC	1 cut(s)	415
LguI	GCTCTTC	2 cut(s)	159, 201
LmnI	GCTCC	5 cut(s)	162, 187, 204, 283, 291
Lsp1109I	GCAGC	5 cut(s)	165, 181, 202, 223, 333
MaeIII	GTNAC	1 cut(s)	224
MalI	GATC	1 cut(s)	417
MboI	GATC	1 cut(s)	415
MhlI	GDGCHC	1 cut(s)	288
MluCI	AATT	1 cut(s)	566
Mly113I	GGCGCC	1 cut(s)	309
MlyI	GAGTC	2 cut(s)	140, 227
MmeI	TCCRAC	5 cut(s)	141, 297, 390, 597, 695
MroXI	GAANNNNTTC	3 cut(s)	487, 504, 657
MseI	TTAA	1 cut(s)	261
MspA1I	CMGCKG	1 cut(s)	153
MspCI	CTTAAG	1 cut(s)	260
MspI	CCGG	1 cut(s)	339
MspR9I	CCNGG	4 cut(s)	275, 281, 302, 340
MvaI	CCWGG	3 cut(s)	275, 281, 302
MvnI	CGCG	5 cut(s)	162, 204, 223, 231, 246
MwoI	GCNNNNNNNGC	9 cut(s)	159, 175, 178, 187, 196, 201, 220, 335, 352
NarI	GGCGCC	1 cut(s)	309
NciI	CCSGG	1 cut(s)	340
NdeII	GATC	1 cut(s)	415
NlaIII	CATG	3 cut(s)	506, 565, 725
NlaIV	GGNNCC	4 cut(s)	158, 200, 310, 490
NmeAIII	GCCGAG	1 cut(s)	403
NmuCI	GTSAC	1 cut(s)	224
NspI	RCATGY	1 cut(s)	506
PagI	TCATGA	1 cut(s)	721
PciI	ACATGT	1 cut(s)	502
PciSI	GCTCTTC	2 cut(s)	159, 201
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PdmI	GAANNNNTTC	3 cut(s)	487, 504, 657
PfeI	GAWTC	1 cut(s)	718
PflFI	GACNNNGTC	1 cut(s)	385
PflMI	CCANNNNNTGG	1 cut(s)	280
PkrI	GCNGC	5 cut(s)	171, 180, 192, 213, 348
PleI	GAGTC	2 cut(s)	140, 227
PluTI	GGCGCC	1 cut(s)	312
PpsI	GAGTC	2 cut(s)	140, 227
PscI	ACATGT	1 cut(s)	502
Psp124BI	GAGCTC	1 cut(s)	288
Psp6I	CCWGG	3 cut(s)	273, 279, 300
PspFI	CCCAGC	1 cut(s)	216
PspGI	CCWGG	3 cut(s)	273, 279, 300
PspN4I	GGNNCC	4 cut(s)	158, 200, 310, 490
PspPI	GGNCC	1 cut(s)	277
PstI	CTGCAG	1 cut(s)	351
PstNI	CAGNNNCTG	2 cut(s)	280, 355
PsyI	GACNNNGTC	1 cut(s)	385
SacI	GAGCTC	1 cut(s)	288
SapI	GCTCTTC	2 cut(s)	159, 201
SaqAI	TTAA	1 cut(s)	261
SatI	GCNGC	5 cut(s)	170, 179, 191, 212, 347
Sau3AI	GATC	1 cut(s)	415
Sau96I	GGNCC	1 cut(s)	277
SchI	GAGTC	2 cut(s)	140, 227
ScrFI	CCNGG	4 cut(s)	275, 281, 302, 340
SduI	GDGCHC	1 cut(s)	288
SfcI	CTRYAG	1 cut(s)	347
SfoI	GGCGCC	1 cut(s)	310
SmlI	CTYRAG	2 cut(s)	260, 580
SmoI	CTYRAG	2 cut(s)	260, 580
Sse9I	AATT	1 cut(s)	566
SsiI	CCGC	6 cut(s)	151, 160, 202, 229, 244, 585
SspDI	GGCGCC	1 cut(s)	308
SspI	AATATT	1 cut(s)	669
SstI	GAGCTC	1 cut(s)	288
StyD4I	CCNGG	4 cut(s)	273, 279, 300, 338
TaqI	TCGA	2 cut(s)	389, 508
TaqII	GACCGA	1 cut(s)	665
TasI	AATT	1 cut(s)	566
TfiI	GAWTC	1 cut(s)	718
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TseFI	GTSAC	1 cut(s)	224
TseI	GCWGC	5 cut(s)	169, 178, 190, 211, 346
Tsp45I	GTSAC	1 cut(s)	224
TspDTI	ATGAA	1 cut(s)	710
Tth111I	GACNNNGTC	1 cut(s)	385
Van91I	CCANNNNNTGG	1 cut(s)	280
Vha464I	CTTAAG	1 cut(s)	260
XapI	RAATTY	1 cut(s)	566
XceI	RCATGY	1 cut(s)	506
XmnI	GAANNNNTTC	3 cut(s)	487, 504, 657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.