Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007400.1

Orthogroup ID

OG0007818

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 374

Gene Structure 373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007400.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 373 bp

atgtcgtgttcctctctcaccctgtttcttcaccctcatcctcctcgtctgaaccacctcaaaccccacctctactactccctctccccccccgcctcatccctctccttcaaatcccacatttgcttctcttcaagctccgaagactcccgctggctccgcgaagagcagcgctggctgcgagaggagcagcgctggctccgcgaagagcaacgctgggcgcgtgaccgcgactctctcctccgcgaaatcgccgaccttaagctcaaaatccaggccctggagctccagaaccctctccaggcaggcgcctcgtcggagactattgccaacatcgccgggttgctgcagtcgctgaaggagaagaaccaga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0006139 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009295 GO:0009314 GO:0009408 GO:0009416 GO:0009507 GO:0009508 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009657 GO:0009658 GO:0009889 GO:0009941 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016020 GO:0016043 GO:0016070 GO:0016853 GO:0016860 GO:0016864 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032774 GO:0034357 GO:0034641 GO:0034645 GO:0034654 GO:0042644 GO:0042646 GO:0042651 GO:0042793 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055035 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:0140096 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PG_binding_1

Protein Analysis

124

Amino Acids

14.48

Weight (kDa)

8.69

Isoelectric Point (pI)

93.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13670 AT4G13670 AT4G13670 AT4G13670
fragaria_vesca	FvH4_4g00470 FvH4_4g00470
malus_domestica	MD04G1005000.v1.1
prunus_persica	Prupe.1G004900_v2.0.a1 Prupe.3G076100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0385901
rosa_laevigata	RLG00000010204
rosa_multiflora	Rmu_co7989456.1_g000001 Rmu_sc0007400.1_g000001 Rmu_sc0008728.1_g000006
rosa_roxburghii	Rroxscaffold_5G00333490
rosa_rugosa	Rorug03G0302300 Rorug03G0302400 Rorug03G0302500
rosa_samantha	Rh4AG007100 Rh4BG004700 Rh4BG004800 Rh4CG007700 Rh4DG006700
rosa_wichuraiana	Rw4G000340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	308
AccB7I	CCANNNNNTGG	1 cut(s)	280
AccII	CGCG	5 cut(s)	162, 204, 223, 231, 246
AciI	CCGC	6 cut(s)	93, 151, 160, 202, 229, 244
AcyI	GRCGYC	1 cut(s)	309
AfeI	AGCGCT	2 cut(s)	173, 194
AfiI	CCNNNNNNNGG	2 cut(s)	280, 301
AflII	CTTAAG	1 cut(s)	260
AgsI	TTSAA	2 cut(s)	112, 135
AjnI	CCWGG	3 cut(s)	273, 279, 300
AluBI	AGCT	3 cut(s)	138, 265, 286
AluI	AGCT	3 cut(s)	138, 265, 286
Alw21I	GWGCWC	1 cut(s)	288
Alw26I	GTCTC	1 cut(s)	314
AlwNI	CAGNNNCTG	2 cut(s)	280, 355
Aor51HI	AGCGCT	2 cut(s)	173, 194
AoxI	GGCC	1 cut(s)	276
ApeKI	GCWGC	4 cut(s)	169, 178, 190, 346
AspLEI	GCGC	4 cut(s)	174, 195, 223, 311
AspS9I	GGNCC	1 cut(s)	277
AsuC2I	CCSGG	1 cut(s)	340
AsuHPI	GGTGA	2 cut(s)	10, 23
BanI	GGYRCC	1 cut(s)	308
BanII	GRGCYC	1 cut(s)	288
BbsI	GAAGAC	1 cut(s)	150
Bbv12I	GWGCWC	1 cut(s)	288
BbvI	GCAGC	4 cut(s)	165, 181, 202, 333
BcgI	CGANNNNNNTGC	2 cut(s)	294, 328
BciT130I	CCWGG	3 cut(s)	275, 281, 302
BcnI	CCSGG	1 cut(s)	340
BcoDI	GTCTC	1 cut(s)	314
BfmI	CTRYAG	1 cut(s)	347
BfoI	RGCGCY	3 cut(s)	175, 196, 312
BfrI	CTTAAG	1 cut(s)	260
BisI	GCNGC	4 cut(s)	170, 179, 191, 347
BlsI	GCNGC	4 cut(s)	171, 180, 192, 348
Bme1390I	CCNGG	4 cut(s)	275, 281, 302, 340
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	3 cut(s)	158, 200, 310
BmrFI	CCNGG	4 cut(s)	275, 281, 302, 340
BpiI	GAAGAC	1 cut(s)	150
BpmI	CTGGAG	3 cut(s)	272, 284, 302
BpuMI	CCSGG	1 cut(s)	340
BsaHI	GRCGYC	1 cut(s)	309
BsaJI	CCNNGG	1 cut(s)	279
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bsc4I	CCNNNNNNNGG	2 cut(s)	280, 301
BseBI	CCWGG	3 cut(s)	275, 281, 302
BseDI	CCNNGG	1 cut(s)	279
BseGI	GGATG	2 cut(s)	37, 98
BseLI	CCNNNNNNNGG	2 cut(s)	280, 301
BseRI	GAGGAG	3 cut(s)	33, 200, 230
BseXI	GCAGC	4 cut(s)	165, 181, 202, 333
BseYI	CCCAGC	1 cut(s)	216
Bsh1236I	CGCG	5 cut(s)	162, 204, 223, 231, 246
BshFI	GGCC	1 cut(s)	278
BshNI	GGYRCC	1 cut(s)	308
BsiHKAI	GWGCWC	1 cut(s)	288
BsiSI	CCGG	1 cut(s)	339
BslI	CCNNNNNNNGG	2 cut(s)	280, 301
BsmAI	GTCTC	1 cut(s)	314
BsnI	GGCC	1 cut(s)	278
Bsp1286I	GDGCHC	1 cut(s)	288
BspACI	CCGC	6 cut(s)	93, 151, 160, 202, 229, 244
BspANI	GGCC	1 cut(s)	278
BspFNI	CGCG	5 cut(s)	162, 204, 223, 231, 246
BspLI	GGNNCC	3 cut(s)	158, 200, 310
BspMAI	CTGCAG	1 cut(s)	351
BspQI	GCTCTTC	2 cut(s)	159, 201
BspT107I	GGYRCC	1 cut(s)	308
BspTI	CTTAAG	1 cut(s)	260
BssECI	CCNNGG	1 cut(s)	279
BssNI	GRCGYC	1 cut(s)	309
Bst2UI	CCWGG	3 cut(s)	275, 281, 302
Bst6I	CTCTTC	3 cut(s)	136, 159, 201
BstACI	GRCGYC	1 cut(s)	309
BstAFI	CTTAAG	1 cut(s)	260
BstC8I	GCNNGC	4 cut(s)	155, 176, 197, 307
BstF5I	GGATG	2 cut(s)	37, 98
BstFNI	CGCG	5 cut(s)	162, 204, 223, 231, 246
BstH2I	RGCGCY	3 cut(s)	175, 196, 312
BstHHI	GCGC	4 cut(s)	174, 195, 223, 311
BstMAI	GTCTC	1 cut(s)	314
BstMWI	GCNNNNNNNGC	8 cut(s)	159, 175, 178, 187, 196, 201, 335, 352
BstNI	CCWGG	3 cut(s)	275, 281, 302
BstSCI	CCNGG	4 cut(s)	273, 279, 300, 338
BstSFI	CTRYAG	1 cut(s)	347
BstUI	CGCG	5 cut(s)	162, 204, 223, 231, 246
BstV1I	GCAGC	4 cut(s)	165, 181, 202, 333
BstV2I	GAAGAC	1 cut(s)	150
BsuRI	GGCC	1 cut(s)	278
BtgZI	GCGATG	1 cut(s)	319
BtsCI	GGATG	2 cut(s)	37, 98
Cac8I	GCNNGC	4 cut(s)	155, 176, 197, 307
CaiI	CAGNNNCTG	2 cut(s)	280, 355
CfoI	GCGC	4 cut(s)	174, 195, 223, 311
Cfr13I	GGNCC	1 cut(s)	277
CviJI	RGCY	7 cut(s)	138, 157, 178, 199, 265, 278, 286
CviKI_1	RGCY	7 cut(s)	138, 157, 178, 199, 265, 278, 286
DinI	GGCGCC	1 cut(s)	310
Eam1104I	CTCTTC	3 cut(s)	136, 159, 201
EarI	CTCTTC	3 cut(s)	136, 159, 201
Ecl136II	GAGCTC	1 cut(s)	286
Eco24I	GRGCYC	1 cut(s)	288
Eco47III	AGCGCT	2 cut(s)	173, 194
Eco53kI	GAGCTC	1 cut(s)	286
EcoICRI	GAGCTC	1 cut(s)	286
EcoO109I	RGGNCCY	1 cut(s)	277
EcoRII	CCWGG	3 cut(s)	273, 279, 300
EcoT38I	GRGCYC	1 cut(s)	288
EgeI	GGCGCC	1 cut(s)	310
EheI	GGCGCC	1 cut(s)	310
FauI	CCCGC	2 cut(s)	100, 158
Fnu4HI	GCNGC	4 cut(s)	170, 179, 191, 347
FokI	GGATG	2 cut(s)	24, 85
FriOI	GRGCYC	1 cut(s)	288
Fsp4HI	GCNGC	4 cut(s)	170, 179, 191, 347
GlaI	GCGC	4 cut(s)	173, 194, 222, 310
GluI	GCNGC	4 cut(s)	170, 179, 191, 347
GsaI	CCCAGC	1 cut(s)	220
GsuI	CTGGAG	3 cut(s)	272, 284, 302
HaeII	RGCGCY	3 cut(s)	175, 196, 312
HaeIII	GGCC	1 cut(s)	278
HapII	CCGG	1 cut(s)	339
HhaI	GCGC	4 cut(s)	174, 195, 223, 311
Hin1I	GRCGYC	1 cut(s)	309
Hin6I	GCGC	4 cut(s)	172, 193, 221, 309
HinP1I	GCGC	4 cut(s)	172, 193, 221, 309
HinfI	GANTC	2 cut(s)	146, 233
HpaII	CCGG	1 cut(s)	339
HphI	GGTGA	2 cut(s)	10, 23
Hpy188I	TCNGA	3 cut(s)	51, 142, 319
Hpy188III	TCNNGA	1 cut(s)	289
Hpy99I	CGWCG	1 cut(s)	319
HpyAV	CCTTC	2 cut(s)	118, 352
HpyCH4V	TGCA	1 cut(s)	349
HpyF10VI	GCNNNNNNNGC	8 cut(s)	159, 175, 178, 187, 196, 201, 335, 352
Hsp92I	GRCGYC	1 cut(s)	309
HspAI	GCGC	4 cut(s)	172, 193, 221, 309
KasI	GGCGCC	1 cut(s)	308
LguI	GCTCTTC	2 cut(s)	159, 201
LmnI	GCTCC	6 cut(s)	143, 162, 187, 204, 283, 291
Lsp1109I	GCAGC	4 cut(s)	165, 181, 202, 333
MaeIII	GTNAC	1 cut(s)	224
MboII	GAAGA	5 cut(s)	20, 123, 155, 176, 218
MhlI	GDGCHC	1 cut(s)	288
Mly113I	GGCGCC	1 cut(s)	309
MlyI	GAGTC	2 cut(s)	140, 227
MmeI	TCCRAC	1 cut(s)	297
MseI	TTAA	1 cut(s)	261
MspA1I	CMGCKG	1 cut(s)	153
MspCI	CTTAAG	1 cut(s)	260
MspI	CCGG	1 cut(s)	339
MspR9I	CCNGG	4 cut(s)	275, 281, 302, 340
MvaI	CCWGG	3 cut(s)	275, 281, 302
MvnI	CGCG	5 cut(s)	162, 204, 223, 231, 246
MwoI	GCNNNNNNNGC	8 cut(s)	159, 175, 178, 187, 196, 201, 335, 352
NarI	GGCGCC	1 cut(s)	309
NciI	CCSGG	1 cut(s)	340
NlaIV	GGNNCC	3 cut(s)	158, 200, 310
NmuCI	GTSAC	1 cut(s)	224
PciSI	GCTCTTC	2 cut(s)	159, 201
PcsI	WCGNNNNNNNCGW	1 cut(s)	220
PflMI	CCANNNNNTGG	1 cut(s)	280
PkrI	GCNGC	4 cut(s)	171, 180, 192, 348
PleI	GAGTC	2 cut(s)	140, 227
PluTI	GGCGCC	1 cut(s)	312
PpsI	GAGTC	2 cut(s)	140, 227
Psp124BI	GAGCTC	1 cut(s)	288
Psp6I	CCWGG	3 cut(s)	273, 279, 300
PspFI	CCCAGC	1 cut(s)	216
PspGI	CCWGG	3 cut(s)	273, 279, 300
PspN4I	GGNNCC	3 cut(s)	158, 200, 310
PspPI	GGNCC	1 cut(s)	277
PstI	CTGCAG	1 cut(s)	351
PstNI	CAGNNNCTG	2 cut(s)	280, 355
SacI	GAGCTC	1 cut(s)	288
SapI	GCTCTTC	2 cut(s)	159, 201
SaqAI	TTAA	1 cut(s)	261
SatI	GCNGC	4 cut(s)	170, 179, 191, 347
Sau96I	GGNCC	1 cut(s)	277
SchI	GAGTC	2 cut(s)	140, 227
ScrFI	CCNGG	4 cut(s)	275, 281, 302, 340
SduI	GDGCHC	1 cut(s)	288
SetI	ASST	6 cut(s)	60, 72, 140, 261, 267, 288
SfcI	CTRYAG	1 cut(s)	347
SfoI	GGCGCC	1 cut(s)	310
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
SsiI	CCGC	6 cut(s)	93, 151, 160, 202, 229, 244
SspDI	GGCGCC	1 cut(s)	308
SstI	GAGCTC	1 cut(s)	288
StyD4I	CCNGG	4 cut(s)	273, 279, 300, 338
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TseFI	GTSAC	1 cut(s)	224
TseI	GCWGC	4 cut(s)	169, 178, 190, 346
Tsp45I	GTSAC	1 cut(s)	224
Van91I	CCANNNNNTGG	1 cut(s)	280
Vha464I	CTTAAG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.