Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0007818

Physical Location & Seq

Genomic Coordinates Reverse (-)

5593635 .. 5595298

Gene Structure 1664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G076100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

GAAGCACTGCAAAAACCAGGATTTTACGCGGGTGAGGAAGACATGGAGTTTTCCAGCTTCTCAAGCGGGACCGAACGTGCTGTCAAGACTTGGCAAGCCTCCTTAGACGCCCCTCAAGATGGCATAGTGACTGCAGAACTTGAACAATTATATACGGGGAGTACTCTGACTGCTACTCAAAAGGAAGATCCAAATGGAGCTGCAGTTACTTCTGGAACAGAAATTTCAGAGGTCCAGCAAACACTTGTGAAAGAAGGTGTAACAAAAGTAGAGGTATCTGAGCATTGTGTTTTTCTCCTTGGAGAGAACCGCTGGGAAGATTCGTCTAGACTTAGCAGGAACCAAAAAAAAGTAGGTGAAAGCAAGACAATGAATACCACAACAAGGTGTCTTACTTGTCGAGGGGAGGGTCGCTTATTGTGCACAGAATGGGATGGAACAGGCGAGCCAAACATTGAAGAACAGTTCTTGGATTGGGTGGAAGATGGAGCAAAATGTCCATATTGTGAAGGTCATGGGTTTACAATTTGCGACGTATGTGAAGGGGCAACAGTAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0006139 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009295 GO:0009314 GO:0009408 GO:0009416 GO:0009507 GO:0009508 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009657 GO:0009658 GO:0009889 GO:0009941 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016020 GO:0016043 GO:0016070 GO:0016853 GO:0016860 GO:0016864 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032774 GO:0034357 GO:0034641 GO:0034645 GO:0034654 GO:0042644 GO:0042646 GO:0042651 GO:0042793 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055035 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:0140096 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PG_binding_1

Protein Analysis

187

Amino Acids

20.33

Weight (kDa)

4.43

Isoelectric Point (pI)

39.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13670 AT4G13670 AT4G13670 AT4G13670
fragaria_vesca	FvH4_4g00470 FvH4_4g00470
malus_domestica	MD04G1005000.v1.1
prunus_persica	Prupe.1G004900_v2.0.a1 Prupe.3G076100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0385901
rosa_laevigata	RLG00000010204
rosa_multiflora	Rmu_co7989456.1_g000001 Rmu_sc0007400.1_g000001 Rmu_sc0008728.1_g000006
rosa_roxburghii	Rroxscaffold_5G00333490
rosa_rugosa	Rorug03G0302300 Rorug03G0302400 Rorug03G0302500
rosa_samantha	Rh4AG007100 Rh4BG004700 Rh4BG004800 Rh4CG007700 Rh4DG006700
rosa_wichuraiana	Rw4G000340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	29
AciI	CCGC	3 cut(s)	29, 66, 310
AclWI	GGATC	1 cut(s)	182
AcsI	RAATTY	1 cut(s)	222
AcyI	GRCGYC	1 cut(s)	108
AfaI	GTAC	1 cut(s)	163
AfiI	CCNNNNNNNGG	2 cut(s)	119, 384
AgsI	TTSAA	2 cut(s)	143, 458
AjnI	CCWGG	1 cut(s)	16
AluBI	AGCT	3 cut(s)	57, 200, 557
AluI	AGCT	3 cut(s)	57, 200, 557
Alw21I	GWGCWC	1 cut(s)	425
Alw44I	GTGCAC	1 cut(s)	421
AlwI	GGATC	1 cut(s)	182
ApaLI	GTGCAC	1 cut(s)	421
ApeKI	GCWGC	1 cut(s)	200
ApoI	RAATTY	1 cut(s)	222
ArsI	GACNNNNNNTTYG	2 cut(s)	66, 98
AspS9I	GGNCC	2 cut(s)	69, 232
AsuHPI	GGTGA	2 cut(s)	44, 368
AvaII	GGWCC	2 cut(s)	69, 232
BaeGI	GKGCMC	1 cut(s)	425
BbsI	GAAGAC	1 cut(s)	45
Bbv12I	GWGCWC	1 cut(s)	425
BbvI	GCAGC	1 cut(s)	187
BccI	CCATC	3 cut(s)	113, 428, 479
BciT130I	CCWGG	1 cut(s)	18
BfaI	CTAG	1 cut(s)	327
BfmI	CTRYAG	2 cut(s)	132, 201
BisI	GCNGC	1 cut(s)	201
BlsI	GCNGC	1 cut(s)	202
BmcAI	AGTACT	1 cut(s)	163
Bme1390I	CCNGG	1 cut(s)	18
Bme18I	GGWCC	2 cut(s)	69, 232
BmgT120I	GGNCC	2 cut(s)	69, 232
BmiI	GGNNCC	2 cut(s)	70, 341
BmrFI	CCNGG	1 cut(s)	18
BpiI	GAAGAC	1 cut(s)	45
BpuEI	CTTGAG	2 cut(s)	46, 99
BsaHI	GRCGYC	1 cut(s)	108
BsaJI	CCNNGG	1 cut(s)	298
BsaXI	ACNNNNNCTCC	2 cut(s)	189, 219
Bsc4I	CCNNNNNNNGG	2 cut(s)	119, 384
BseBI	CCWGG	1 cut(s)	18
BseDI	CCNNGG	1 cut(s)	298
BseGI	GGATG	1 cut(s)	439
BseLI	CCNNNNNNNGG	2 cut(s)	119, 384
BseMII	CTCAG	1 cut(s)	270
BseSI	GKGCMC	1 cut(s)	425
BseXI	GCAGC	1 cut(s)	187
BseYI	CCCAGC	1 cut(s)	312
Bsh1236I	CGCG	1 cut(s)	29
BsiHKAI	GWGCWC	1 cut(s)	425
BslFI	GGGAC	1 cut(s)	82
BslI	CCNNNNNNNGG	2 cut(s)	119, 384
BsmFI	GGGAC	1 cut(s)	82
Bsp1286I	GDGCHC	1 cut(s)	425
Bsp143I	GATC	1 cut(s)	187
BspACI	CCGC	3 cut(s)	29, 66, 310
BspCNI	CTCAG	1 cut(s)	271
BspFNI	CGCG	1 cut(s)	29
BspLI	GGNNCC	2 cut(s)	70, 341
BspMAI	CTGCAG	2 cut(s)	136, 205
BspPI	GGATC	1 cut(s)	182
BssECI	CCNNGG	1 cut(s)	298
BssMI	GATC	1 cut(s)	187
BssNI	GRCGYC	1 cut(s)	108
BssT1I	CCWWGG	1 cut(s)	298
Bst2UI	CCWGG	1 cut(s)	18
Bst4CI	ACNGT	2 cut(s)	465, 553
BstACI	GRCGYC	1 cut(s)	108
BstC8I	GCNNGC	2 cut(s)	96, 446
BstDEI	CTNAG	4 cut(s)	103, 279, 332, 558
BstF5I	GGATG	1 cut(s)	439
BstFNI	CGCG	1 cut(s)	29
BstKTI	GATC	1 cut(s)	190
BstMBI	GATC	1 cut(s)	187
BstMWI	GCNNNNNNNGC	3 cut(s)	63, 420, 554
BstNI	CCWGG	1 cut(s)	18
BstSCI	CCNGG	1 cut(s)	16
BstSFI	CTRYAG	2 cut(s)	132, 201
BstSLI	GKGCMC	1 cut(s)	425
BstUI	CGCG	1 cut(s)	29
BstV1I	GCAGC	1 cut(s)	187
BstV2I	GAAGAC	1 cut(s)	45
BstX2I	RGATCY	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	187
BtsCI	GGATG	1 cut(s)	439
BtsI	GCAGTG	1 cut(s)	5
BtsIMutI	CAGTG	1 cut(s)	5
Cac8I	GCNNGC	2 cut(s)	96, 446
Cfr13I	GGNCC	2 cut(s)	69, 232
CseI	GACGC	1 cut(s)	116
Csp6I	GTAC	1 cut(s)	162
CviAII	CATG	2 cut(s)	43, 515
CviJI	RGCY	5 cut(s)	57, 98, 200, 448, 557
CviKI_1	RGCY	5 cut(s)	57, 98, 200, 448, 557
CviQI	GTAC	1 cut(s)	162
DdeI	CTNAG	4 cut(s)	103, 279, 332, 558
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
Eco130I	CCWWGG	1 cut(s)	298
Eco47I	GGWCC	2 cut(s)	69, 232
EcoRII	CCWGG	1 cut(s)	16
EcoT14I	CCWWGG	1 cut(s)	298
ErhI	CCWWGG	1 cut(s)	298
FaeI	CATG	2 cut(s)	46, 518
FaiI	YATR	7 cut(s)	44, 125, 151, 153, 502, 516, 538
FaqI	GGGAC	1 cut(s)	82
FatI	CATG	2 cut(s)	42, 514
FauI	CCCGC	2 cut(s)	22, 59
Fnu4HI	GCNGC	1 cut(s)	201
FokI	GGATG	1 cut(s)	446
Fsp4HI	GCNGC	1 cut(s)	201
FspBI	CTAG	1 cut(s)	327
GluI	GCNGC	1 cut(s)	201
GsaI	CCCAGC	1 cut(s)	316
HgaI	GACGC	1 cut(s)	116
Hin1I	GRCGYC	1 cut(s)	108
Hin1II	CATG	2 cut(s)	46, 518
HinfI	GANTC	1 cut(s)	320
HphI	GGTGA	2 cut(s)	44, 368
Hpy166II	GTNNAC	2 cut(s)	423, 522
Hpy188I	TCNGA	3 cut(s)	168, 229, 280
Hpy188III	TCNNGA	4 cut(s)	85, 116, 213, 327
Hpy8I	GTNNAC	2 cut(s)	423, 522
Hpy99I	CGWCG	1 cut(s)	536
HpyAV	CCTTC	3 cut(s)	248, 503, 536
HpyCH4III	ACNGT	2 cut(s)	465, 553
HpyCH4IV	ACGT	2 cut(s)	76, 534
HpyCH4V	TGCA	4 cut(s)	10, 134, 203, 423
HpyF10VI	GCNNNNNNNGC	3 cut(s)	63, 420, 554
HpyF3I	CTNAG	4 cut(s)	103, 279, 332, 558
HpySE526I	ACGT	2 cut(s)	76, 534
Hsp92I	GRCGYC	1 cut(s)	108
Hsp92II	CATG	2 cut(s)	46, 518
Kzo9I	GATC	1 cut(s)	187
LmnI	GCTCC	2 cut(s)	197, 488
LpnPI	CCDG	8 cut(s)	3, 30, 67, 198, 248, 298, 322, 426
Lsp1109I	GCAGC	1 cut(s)	187
MaeI	CTAG	1 cut(s)	327
MaeII	ACGT	2 cut(s)	76, 534
MaeIII	GTNAC	3 cut(s)	127, 205, 259
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MboII	GAAGA	5 cut(s)	50, 197, 329, 470, 494
MflI	RGATCY	1 cut(s)	187
MhlI	GDGCHC	1 cut(s)	425
MluCI	AATT	3 cut(s)	146, 222, 525
MnlI	CCTC	7 cut(s)	28, 109, 123, 223, 265, 395, 400
MspA1I	CMGCKG	1 cut(s)	312
MspR9I	CCNGG	1 cut(s)	18
MvaI	CCWGG	1 cut(s)	18
MvnI	CGCG	1 cut(s)	29
MwoI	GCNNNNNNNGC	3 cut(s)	63, 420, 554
NdeII	GATC	1 cut(s)	187
NlaIII	CATG	2 cut(s)	46, 518
NlaIV	GGNNCC	2 cut(s)	70, 341
NmuCI	GTSAC	1 cut(s)	127
PfeI	GAWTC	1 cut(s)	320
PkrI	GCNGC	1 cut(s)	202
Psp6I	CCWGG	1 cut(s)	16
PspFI	CCCAGC	1 cut(s)	312
PspGI	CCWGG	1 cut(s)	16
PspN4I	GGNNCC	2 cut(s)	70, 341
PspPI	GGNCC	2 cut(s)	69, 232
PstI	CTGCAG	2 cut(s)	136, 205
PsuI	RGATCY	1 cut(s)	187
RsaI	GTAC	1 cut(s)	163
RsaNI	GTAC	1 cut(s)	162
SatI	GCNGC	1 cut(s)	201
Sau3AI	GATC	1 cut(s)	187
Sau96I	GGNCC	2 cut(s)	69, 232
ScaI	AGTACT	1 cut(s)	163
ScrFI	CCNGG	1 cut(s)	18
SduI	GDGCHC	1 cut(s)	425
SfcI	CTRYAG	2 cut(s)	132, 201
SinI	GGWCC	2 cut(s)	69, 232
SmlI	CTYRAG	2 cut(s)	61, 114
SmoI	CTYRAG	2 cut(s)	61, 114
Sse9I	AATT	3 cut(s)	146, 222, 525
SsiI	CCGC	3 cut(s)	29, 66, 310
SspMI	CTAG	1 cut(s)	327
StyD4I	CCNGG	1 cut(s)	16
StyI	CCWWGG	1 cut(s)	298
TaaI	ACNGT	2 cut(s)	465, 553
TaiI	ACGT	2 cut(s)	79, 537
TaqI	TCGA	1 cut(s)	400
TaqII	GACCGA	1 cut(s)	86
TasI	AATT	3 cut(s)	146, 222, 525
TatI	WGTACW	1 cut(s)	161
TfiI	GAWTC	1 cut(s)	320
TscAI	CASTG	1 cut(s)	12
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	1 cut(s)	200
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	1 cut(s)	386
TspRI	CASTG	1 cut(s)	12
VneI	GTGCAC	1 cut(s)	421
VpaK11BI	GGWCC	2 cut(s)	69, 232
XapI	RAATTY	1 cut(s)	222
XbaI	TCTAGA	1 cut(s)	326
XspI	CTAG	1 cut(s)	327
ZrmI	AGTACT	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.