Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0007818

Physical Location & Seq

Genomic Coordinates Reverse (-)

1307351 .. 1311440

Gene Structure 4090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG007100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGTCTTCTTCGTCTCTCACTCTCTTTCTTCACCCTCATCCTCCTCGTCTGAACCACCTCAAACCCAACCTCTACTCCCTCTCCCCTCTCACCTCATCTCTCTCCTTCAAACCCCACATTTGCTTCTCTTCAAACTCCAACTCCCACCACGACGCCACCTCCGAAGAGTCCCGCTGGCTCCGCGAAGAGCACCGCTGGCTGCGAGAGGAACAGCGCTGGCTCCGCGAAGAGCAACGCTGGGCGCGTGACAGCGACTCTCTCCTCCGCGAAATCGCCGACCTTAAGCTCAAAATCCAGGCCTTGGAGCTCCAGAACCCTCTCCAGGCAGGGGCCTCGTCGGAGACTATTGCCAACATCGCCGGGTTGCTGCAGTCGTTGAAGGAGAAGAACCAGATTGCCGAGACGGGGTCGAGTTCCAGAGCGCTGGAGTTGGAAGATCATAATCAGGTGAAGGAGGTGTTCGCTGTTTCGGAAGTGAAGAAGACAAAGGAGGTTCTGAGAAAGGGTTCCGAAGGAGAACATGTTCGAGCAATGCAGGAAGCATTGCTAAAATCGGGATTTTACTCGGGTGAAGAAGACATGGAATTTTCCAACTTTTCAAGCGGGACAGAACGAGCTGTCAAGACTTGGCAAGCCTCCATAGGTTTGCCTGAAGATGGAATAATGACCGAAGAACTTCTTGAAAGATTATTTGACCCAAAAACTGAGGGTGCTGTTGAAACAAAGGTATGTTGGAATCATGAGGTTTCAGGATACATTTGTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0006139 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009295 GO:0009314 GO:0009408 GO:0009416 GO:0009507 GO:0009508 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009657 GO:0009658 GO:0009889 GO:0009941 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016020 GO:0016043 GO:0016070 GO:0016853 GO:0016860 GO:0016864 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032774 GO:0034357 GO:0034641 GO:0034645 GO:0034654 GO:0042644 GO:0042646 GO:0042651 GO:0042793 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055035 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:0140096 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PG_binding_1

Protein Analysis

255

Amino Acids

28.97

Weight (kDa)

5.54

Isoelectric Point (pI)

60.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PG_binding_1	PF01471	172 - 230	2.6e-12	Putative peptidoglycan binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13670 AT4G13670 AT4G13670 AT4G13670
fragaria_vesca	FvH4_4g00470 FvH4_4g00470
malus_domestica	MD04G1005000.v1.1
prunus_persica	Prupe.1G004900_v2.0.a1 Prupe.3G076100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0385901
rosa_laevigata	RLG00000010204
rosa_multiflora	Rmu_co7989456.1_g000001 Rmu_sc0007400.1_g000001 Rmu_sc0008728.1_g000006
rosa_roxburghii	Rroxscaffold_5G00333490
rosa_rugosa	Rorug03G0302300 Rorug03G0302400 Rorug03G0302500
rosa_samantha	Rh4AG007100 Rh4BG004700 Rh4BG004800 Rh4CG007700 Rh4DG006700
rosa_wichuraiana	Rw4G000340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	301
AccII	CGCG	4 cut(s)	183, 225, 244, 267
AciI	CCGC	6 cut(s)	172, 181, 193, 223, 265, 603
AcsI	RAATTY	1 cut(s)	584
AcuI	CTGAAG	1 cut(s)	672
AcyI	GRCGYC	1 cut(s)	153
AfeI	AGCGCT	2 cut(s)	215, 423
AfiI	CCNNNNNNNGG	5 cut(s)	301, 322, 328, 405, 656
AflII	CTTAAG	1 cut(s)	281
AflIII	ACRYGT	1 cut(s)	520
AgsI	TTSAA	6 cut(s)	109, 132, 379, 600, 683, 719
AjnI	CCWGG	2 cut(s)	294, 321
AloI	GAACNNNNNNTCC	2 cut(s)	507, 539
AluBI	AGCT	3 cut(s)	286, 307, 617
AluI	AGCT	3 cut(s)	286, 307, 617
Alw21I	GWGCWC	2 cut(s)	192, 309
Alw26I	GTCTC	3 cut(s)	18, 335, 395
Ama87I	CYCGRG	1 cut(s)	565
Aor51HI	AGCGCT	2 cut(s)	215, 423
AoxI	GGCC	2 cut(s)	297, 330
ApeKI	GCWGC	2 cut(s)	199, 367
ApoI	RAATTY	1 cut(s)	584
Asp700I	GAANNNNTTC	3 cut(s)	505, 522, 675
AspLEI	GCGC	3 cut(s)	216, 244, 424
AspS9I	GGNCC	1 cut(s)	330
AsuC2I	CCSGG	1 cut(s)	361
AsuHPI	GGTGA	4 cut(s)	23, 82, 460, 581
AvaI	CYCGRG	1 cut(s)	565
BaeI	ACNNNNGTAYC	1 cut(s)	745
BanII	GRGCYC	1 cut(s)	309
BbsI	GAAGAC	2 cut(s)	488, 582
Bbv12I	GWGCWC	2 cut(s)	192, 309
BbvI	GCAGC	2 cut(s)	186, 354
BccI	CCATC	1 cut(s)	650
BcgI	CGANNNNNNTGC	2 cut(s)	315, 349
BciT130I	CCWGG	2 cut(s)	296, 323
BciVI	GTATCC	1 cut(s)	746
BcnI	CCSGG	1 cut(s)	361
BcoDI	GTCTC	3 cut(s)	18, 335, 395
BfmI	CTRYAG	1 cut(s)	368
BfoI	RGCGCY	2 cut(s)	217, 425
BfrI	CTTAAG	1 cut(s)	281
BfuI	GTATCC	1 cut(s)	746
BisI	GCNGC	2 cut(s)	200, 368
BlsI	GCNGC	2 cut(s)	201, 369
Bme1390I	CCNGG	3 cut(s)	296, 323, 361
BmeT110I	CYCGRG	1 cut(s)	565
BmgT120I	GGNCC	1 cut(s)	330
BmiI	GGNNCC	4 cut(s)	179, 221, 331, 508
BmrFI	CCNGG	3 cut(s)	296, 323, 361
BpiI	GAAGAC	2 cut(s)	488, 582
BpmI	CTGGAG	3 cut(s)	293, 305, 446
BpuMI	CCSGG	1 cut(s)	361
BsaBI	GATNNNNATC	1 cut(s)	441
BsaHI	GRCGYC	1 cut(s)	153
BsaJI	CCNNGG	1 cut(s)	300
Bsc4I	CCNNNNNNNGG	5 cut(s)	301, 322, 328, 405, 656
Bse3DI	GCAATG	2 cut(s)	537, 542
Bse8I	GATNNNNATC	1 cut(s)	441
BseBI	CCWGG	2 cut(s)	296, 323
BseDI	CCNNGG	1 cut(s)	300
BseGI	GGATG	1 cut(s)	37
BseJI	GATNNNNATC	1 cut(s)	441
BseLI	CCNNNNNNNGG	5 cut(s)	301, 322, 328, 405, 656
BseMI	GCAATG	2 cut(s)	537, 542
BseMII	CTCAG	2 cut(s)	488, 696
BseRI	GAGGAG	2 cut(s)	33, 251
BseXI	GCAGC	2 cut(s)	186, 354
BseYI	CCCAGC	1 cut(s)	237
Bsh1236I	CGCG	4 cut(s)	183, 225, 244, 267
BshFI	GGCC	2 cut(s)	299, 332
BsiHKAI	GWGCWC	2 cut(s)	192, 309
BsiHKCI	CYCGRG	1 cut(s)	565
BsiSI	CCGG	1 cut(s)	360
BslFI	GGGAC	2 cut(s)	154, 619
BslI	CCNNNNNNNGG	5 cut(s)	301, 322, 328, 405, 656
BsmAI	GTCTC	3 cut(s)	18, 335, 395
BsmBI	CGTCTC	2 cut(s)	18, 395
BsmFI	GGGAC	2 cut(s)	154, 619
BsnI	GGCC	2 cut(s)	299, 332
BsoBI	CYCGRG	1 cut(s)	565
Bsp1286I	GDGCHC	2 cut(s)	192, 309
Bsp143I	GATC	1 cut(s)	436
BspACI	CCGC	6 cut(s)	172, 181, 193, 223, 265, 603
BspANI	GGCC	2 cut(s)	299, 332
BspCNI	CTCAG	2 cut(s)	489, 697
BspFNI	CGCG	4 cut(s)	183, 225, 244, 267
BspHI	TCATGA	1 cut(s)	739
BspLI	GGNNCC	4 cut(s)	179, 221, 331, 508
BspMAI	CTGCAG	1 cut(s)	372
BspQI	GCTCTTC	2 cut(s)	180, 222
BspTI	CTTAAG	1 cut(s)	281
BsrDI	GCAATG	2 cut(s)	537, 542
BssECI	CCNNGG	1 cut(s)	300
BssMI	GATC	1 cut(s)	436
BssNI	GRCGYC	1 cut(s)	153
BssT1I	CCWWGG	1 cut(s)	300
Bst2UI	CCWGG	2 cut(s)	296, 323
Bst6I	CTCTTC	4 cut(s)	133, 159, 180, 222
BstACI	GRCGYC	1 cut(s)	153
BstAFI	CTTAAG	1 cut(s)	281
BstC8I	GCNNGC	4 cut(s)	176, 197, 218, 633
BstDEI	CTNAG	2 cut(s)	497, 705
BstF5I	GGATG	1 cut(s)	37
BstFNI	CGCG	4 cut(s)	183, 225, 244, 267
BstH2I	RGCGCY	2 cut(s)	217, 425
BstHHI	GCGC	3 cut(s)	216, 244, 424
BstKTI	GATC	1 cut(s)	439
BstMAI	GTCTC	3 cut(s)	18, 335, 395
BstMBI	GATC	1 cut(s)	436
BstMWI	GCNNNNNNNGC	4 cut(s)	180, 196, 222, 356
BstNI	CCWGG	2 cut(s)	296, 323
BstNSI	RCATGY	1 cut(s)	524
BstSCI	CCNGG	3 cut(s)	294, 321, 359
BstSFI	CTRYAG	1 cut(s)	368
BstUI	CGCG	4 cut(s)	183, 225, 244, 267
BstV1I	GCAGC	2 cut(s)	186, 354
BstV2I	GAAGAC	2 cut(s)	488, 582
BstXI	CCANNNNNNTGG	1 cut(s)	424
BsuI	GTATCC	1 cut(s)	746
BsuRI	GGCC	2 cut(s)	299, 332
BtgZI	GCGATG	1 cut(s)	340
BtsCI	GGATG	1 cut(s)	37
Cac8I	GCNNGC	4 cut(s)	176, 197, 218, 633
CciI	TCATGA	1 cut(s)	739
CfoI	GCGC	3 cut(s)	216, 244, 424
Cfr13I	GGNCC	1 cut(s)	330
CseI	GACGC	1 cut(s)	161
CviAII	CATG	3 cut(s)	521, 580, 740
CviJI	RGCY	9 cut(s)	178, 199, 220, 286, 299, 307, 332, 617, 635
CviKI_1	RGCY	9 cut(s)	178, 199, 220, 286, 299, 307, 332, 617, 635
DdeI	CTNAG	2 cut(s)	497, 705
DpnI	GATC	1 cut(s)	438
DpnII	GATC	1 cut(s)	436
Eam1104I	CTCTTC	4 cut(s)	133, 159, 180, 222
EarI	CTCTTC	4 cut(s)	133, 159, 180, 222
Ecl136II	GAGCTC	1 cut(s)	307
Eco130I	CCWWGG	1 cut(s)	300
Eco147I	AGGCCT	1 cut(s)	299
Eco24I	GRGCYC	1 cut(s)	309
Eco47III	AGCGCT	2 cut(s)	215, 423
Eco53kI	GAGCTC	1 cut(s)	307
Eco57I	CTGAAG	1 cut(s)	672
Eco88I	CYCGRG	1 cut(s)	565
EcoICRI	GAGCTC	1 cut(s)	307
EcoO109I	RGGNCCY	1 cut(s)	330
EcoRII	CCWGG	2 cut(s)	294, 321
EcoT14I	CCWWGG	1 cut(s)	300
EcoT38I	GRGCYC	1 cut(s)	309
ErhI	CCWWGG	1 cut(s)	300
Esp3I	CGTCTC	2 cut(s)	18, 395
FaeI	CATG	3 cut(s)	524, 583, 743
FaiI	YATR	6 cut(s)	441, 522, 581, 641, 730, 741
FalI	AAGNNNNNCTT	2 cut(s)	663, 695
FaqI	GGGAC	2 cut(s)	154, 619
FatI	CATG	3 cut(s)	520, 579, 739
FauI	CCCGC	2 cut(s)	179, 596
Fnu4HI	GCNGC	2 cut(s)	200, 368
FokI	GGATG	1 cut(s)	24
FriOI	GRGCYC	1 cut(s)	309
Fsp4HI	GCNGC	2 cut(s)	200, 368
GlaI	GCGC	3 cut(s)	215, 243, 423
GluI	GCNGC	2 cut(s)	200, 368
GsaI	CCCAGC	1 cut(s)	241
GsuI	CTGGAG	3 cut(s)	293, 305, 446
HaeII	RGCGCY	2 cut(s)	217, 425
HaeIII	GGCC	2 cut(s)	299, 332
HapII	CCGG	1 cut(s)	360
HgaI	GACGC	1 cut(s)	161
HhaI	GCGC	3 cut(s)	216, 244, 424
Hin1I	GRCGYC	1 cut(s)	153
Hin1II	CATG	3 cut(s)	524, 583, 743
Hin6I	GCGC	3 cut(s)	214, 242, 422
HinP1I	GCGC	3 cut(s)	214, 242, 422
HinfI	GANTC	3 cut(s)	167, 254, 736
HpaII	CCGG	1 cut(s)	360
HphI	GGTGA	4 cut(s)	23, 82, 460, 581
Hpy188I	TCNGA	6 cut(s)	51, 163, 340, 472, 498, 511
Hpy188III	TCNNGA	7 cut(s)	310, 417, 555, 622, 680, 740, 750
Hpy99I	CGWCG	2 cut(s)	155, 340
HpyAV	CCTTC	4 cut(s)	115, 373, 445, 506
HpyCH4V	TGCA	2 cut(s)	370, 535
HpyF10VI	GCNNNNNNNGC	4 cut(s)	180, 196, 222, 356
HpyF3I	CTNAG	2 cut(s)	497, 705
Hsp92I	GRCGYC	1 cut(s)	153
Hsp92II	CATG	3 cut(s)	524, 583, 743
HspAI	GCGC	3 cut(s)	214, 242, 422
Kzo9I	GATC	1 cut(s)	436
LguI	GCTCTTC	2 cut(s)	180, 222
LmnI	GCTCC	4 cut(s)	183, 225, 304, 312
Lsp1109I	GCAGC	2 cut(s)	186, 354
MaeIII	GTNAC	1 cut(s)	245
MalI	GATC	1 cut(s)	438
MboI	GATC	1 cut(s)	436
MhlI	GDGCHC	2 cut(s)	192, 309
MluCI	AATT	1 cut(s)	584
MlyI	GAGTC	2 cut(s)	176, 248
MmeI	TCCRAC	5 cut(s)	162, 318, 411, 615, 713
MroXI	GAANNNNTTC	3 cut(s)	505, 522, 675
MseI	TTAA	1 cut(s)	282
MspA1I	CMGCKG	2 cut(s)	174, 195
MspCI	CTTAAG	1 cut(s)	281
MspI	CCGG	1 cut(s)	360
MspR9I	CCNGG	3 cut(s)	296, 323, 361
MvaI	CCWGG	2 cut(s)	296, 323
MvnI	CGCG	4 cut(s)	183, 225, 244, 267
MwoI	GCNNNNNNNGC	4 cut(s)	180, 196, 222, 356
NciI	CCSGG	1 cut(s)	361
NdeII	GATC	1 cut(s)	436
NlaIII	CATG	3 cut(s)	524, 583, 743
NlaIV	GGNNCC	4 cut(s)	179, 221, 331, 508
NmeAIII	GCCGAG	1 cut(s)	424
NmuCI	GTSAC	1 cut(s)	245
NspI	RCATGY	1 cut(s)	524
PagI	TCATGA	1 cut(s)	739
PceI	AGGCCT	1 cut(s)	299
PciI	ACATGT	1 cut(s)	520
PciSI	GCTCTTC	2 cut(s)	180, 222
PcsI	WCGNNNNNNNCGW	2 cut(s)	159, 241
PdmI	GAANNNNTTC	3 cut(s)	505, 522, 675
PfeI	GAWTC	1 cut(s)	736
PflFI	GACNNNGTC	1 cut(s)	406
PflMI	CCANNNNNTGG	1 cut(s)	301
PkrI	GCNGC	2 cut(s)	201, 369
PleI	GAGTC	2 cut(s)	175, 248
PpsI	GAGTC	2 cut(s)	175, 248
PscI	ACATGT	1 cut(s)	520
Psp124BI	GAGCTC	1 cut(s)	309
Psp6I	CCWGG	2 cut(s)	294, 321
PspFI	CCCAGC	1 cut(s)	237
PspGI	CCWGG	2 cut(s)	294, 321
PspN4I	GGNNCC	4 cut(s)	179, 221, 331, 508
PspPI	GGNCC	1 cut(s)	330
PstI	CTGCAG	1 cut(s)	372
PsyI	GACNNNGTC	1 cut(s)	406
SacI	GAGCTC	1 cut(s)	309
SapI	GCTCTTC	2 cut(s)	180, 222
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	2 cut(s)	200, 368
Sau3AI	GATC	1 cut(s)	436
Sau96I	GGNCC	1 cut(s)	330
SchI	GAGTC	2 cut(s)	176, 248
ScrFI	CCNGG	3 cut(s)	296, 323, 361
SduI	GDGCHC	2 cut(s)	192, 309
SfcI	CTRYAG	1 cut(s)	368
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
Sse9I	AATT	1 cut(s)	584
SseBI	AGGCCT	1 cut(s)	299
SsiI	CCGC	6 cut(s)	172, 181, 193, 223, 265, 603
SstI	GAGCTC	1 cut(s)	309
StuI	AGGCCT	1 cut(s)	299
StyD4I	CCNGG	3 cut(s)	294, 321, 359
StyI	CCWWGG	1 cut(s)	300
TaqI	TCGA	2 cut(s)	410, 526
TaqII	GACCGA	1 cut(s)	683
TasI	AATT	1 cut(s)	584
TfiI	GAWTC	1 cut(s)	736
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TseFI	GTSAC	1 cut(s)	245
TseI	GCWGC	2 cut(s)	199, 367
Tsp45I	GTSAC	1 cut(s)	245
Tth111I	GACNNNGTC	1 cut(s)	406
Van91I	CCANNNNNTGG	1 cut(s)	301
Vha464I	CTTAAG	1 cut(s)	281
XapI	RAATTY	1 cut(s)	584
XceI	RCATGY	1 cut(s)	524
XmnI	GAANNNNTTC	3 cut(s)	505, 522, 675

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.