Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007818

Physical Location & Seq

Genomic Coordinates Reverse (-)

441426 .. 445074

Gene Structure 3649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G004900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGTCTTCTTGCTCTCTCACTCTCTTTCTTCACCCTCCTCCTCCTCCTCCTCCTCTTCTTTCACTTCCATTTGCCCCCAAAAAACCCCACCAATGTTACTCTCTCTCTCCACTTTCCCGCACTTTCAAATCCTTCAAATCTCTCCACATCATCTGCTTCTCTTCAAATTCTTCCTCTTCCCAAAACGACCGCGAGGAGTCCCGCTGGCTCCGCGAAGAGCAGCGATGGCTCCGCGAGGAGCAGCGCTGGCTCCGAGAAGAACAGCGCTGGGCCCGTGACCGCGACTCGCTCCTGCGAGAAATCGCCGAGCTCAAGCTCAAAATTCAGGCCCTAGAGCATCTTCAGGAAGGAGGAGGGGCTTCGGTGTCGGAGTCCGAGACCATCGCCAACATCGCCGGCTTGTTGCAGATTTTGACGGAGAAAAATCGGATAGCTGAGACAGGGTCGAGTTCCAGAGCCATAGAATTGGACCATATTCAGGAGGAGATTCAGGAGGTGTCTGCCGTTCCGGAAGTGAAGGAGAAGAAGAAGAGCAGAAATGCTTTGAGGAAGGGGTCGGAAGGTGAAGAGGTCCGAGCTATGCAGGAAGCATTGCAAAAACTAGGATTTTACTCGGGTGAGGAAGACATGGAGTTTTCCAGCTTCTCAAGCGGGACCGAACGTGCTGTCAAGACTTGGCAAGCCTCCTTAGACGCCCCTCAAGATGGCATAGTGACTGCAGAACTTCTTGAACAATTATATACGGTCGCACAAATTGAGGGTCTGGATAACAAAGGGAGTACTGTGACTGCTACACAAAAGGAAGATACAAATGGAGCTGCAGTTACTTCTGTAACAGAAATTTCGGAGGTCCAGCAAACACTTGTGAAAGAAGGTGTTACAGAAGTAGAGGTATCTGAGCATCGTGTTTTTCTTCTAGGAGAGAACCGCTGGGAAGATTCTTCTAGACTTAGCAGGAACCAAAAAAAAGGAGGTGAAAGCAAGGCAATGAATACCACCACAAGGTGTCTTACTTGTCGAGGGGAGGGTCGCTTATTGTGCACAGAATGTGATGGAACAGGCGAGCCAAACATTGAAGAACAGTTCTTGGATTGGGTGGAAGAGGGAGCAAAATGTCCATATTGTGAAGGTCATGGGTTTACAATTTGCGACGTATGTGAAGGGGCAACAGTAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0006139 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009295 GO:0009314 GO:0009408 GO:0009416 GO:0009507 GO:0009508 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009657 GO:0009658 GO:0009889 GO:0009941 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016020 GO:0016043 GO:0016070 GO:0016853 GO:0016860 GO:0016864 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032774 GO:0034357 GO:0034641 GO:0034645 GO:0034654 GO:0042644 GO:0042646 GO:0042651 GO:0042793 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055035 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:0140096 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PG_binding_1

Protein Analysis

393

Amino Acids

43.79

Weight (kDa)

5.0

Isoelectric Point (pI)

68.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13670 AT4G13670 AT4G13670 AT4G13670
fragaria_vesca	FvH4_4g00470 FvH4_4g00470
malus_domestica	MD04G1005000.v1.1
prunus_persica	Prupe.1G004900_v2.0.a1 Prupe.3G076100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0385901
rosa_laevigata	RLG00000010204
rosa_multiflora	Rmu_co7989456.1_g000001 Rmu_sc0007400.1_g000001 Rmu_sc0008728.1_g000006
rosa_roxburghii	Rroxscaffold_5G00333490
rosa_rugosa	Rorug03G0302300 Rorug03G0302400 Rorug03G0302500
rosa_samantha	Rh4AG007100 Rh4BG004700 Rh4BG004800 Rh4CG007700 Rh4DG006700
rosa_wichuraiana	Rw4G000340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	192, 213, 234, 282
AccIII	TCCGGA	1 cut(s)	508
AciI	CCGC	8 cut(s)	118, 190, 202, 211, 232, 280, 651, 928
AcsI	RAATTY	3 cut(s)	166, 321, 840
AcuI	CTGAAG	1 cut(s)	326
AcyI	GRCGYC	1 cut(s)	693
AdeI	CACNNNGTG	1 cut(s)	1005
AfaI	GTAC	1 cut(s)	781
AfeI	AGCGCT	2 cut(s)	245, 266
AfiI	CCNNNNNNNGG	3 cut(s)	478, 704, 1002
AgsI	TTSAA	5 cut(s)	127, 136, 165, 731, 1076
AluBI	AGCT	7 cut(s)	310, 316, 434, 578, 642, 818, 1175
AluI	AGCT	7 cut(s)	310, 316, 434, 578, 642, 818, 1175
Alw21I	GWGCWC	2 cut(s)	312, 1043
Alw26I	GTCTC	2 cut(s)	371, 431
Alw44I	GTGCAC	1 cut(s)	1039
Ama87I	CYCGRG	1 cut(s)	613
Aor13HI	TCCGGA	1 cut(s)	508
Aor51HI	AGCGCT	2 cut(s)	245, 266
AoxI	GGCC	2 cut(s)	270, 327
ApaI	GGGCCC	1 cut(s)	274
ApaLI	GTGCAC	1 cut(s)	1039
ApeKI	GCWGC	3 cut(s)	220, 241, 818
ApoI	RAATTY	3 cut(s)	166, 321, 840
ArsI	GACNNNNNNTTYG	4 cut(s)	651, 683, 745, 777
AspLEI	GCGC	2 cut(s)	246, 267
AspS9I	GGNCC	7 cut(s)	270, 271, 328, 469, 571, 654, 850
AsuHPI	GGTGA	4 cut(s)	23, 575, 629, 986
AvaI	CYCGRG	1 cut(s)	613
AvaII	GGWCC	4 cut(s)	469, 571, 654, 850
BaeGI	GKGCMC	2 cut(s)	274, 1043
BanII	GRGCYC	2 cut(s)	274, 312
BbsI	GAAGAC	1 cut(s)	630
Bbv12I	GWGCWC	2 cut(s)	312, 1043
BbvI	GCAGC	3 cut(s)	232, 253, 805
BccI	CCATC	4 cut(s)	219, 389, 698, 1046
BceAI	ACGGC	1 cut(s)	488
BcoDI	GTCTC	2 cut(s)	371, 431
BfaI	CTAG	4 cut(s)	332, 602, 917, 945
BfmI	CTRYAG	2 cut(s)	717, 819
BfoI	RGCGCY	2 cut(s)	247, 268
BisI	GCNGC	3 cut(s)	221, 242, 819
BlsI	GCNGC	3 cut(s)	222, 243, 820
BmcAI	AGTACT	1 cut(s)	781
Bme18I	GGWCC	4 cut(s)	469, 571, 654, 850
BmeT110I	CYCGRG	1 cut(s)	613
BmgT120I	GGNCC	7 cut(s)	270, 271, 328, 469, 571, 654, 850
BmiI	GGNNCC	6 cut(s)	209, 230, 251, 272, 655, 959
BmsI	GCATC	2 cut(s)	346, 910
BpiI	GAAGAC	1 cut(s)	630
BpuEI	CTTGAG	3 cut(s)	296, 631, 684
BsaHI	GRCGYC	1 cut(s)	693
BsaI	GGTCTC	1 cut(s)	371
BsaWI	WCCGGW	1 cut(s)	508
BsaXI	ACNNNNNCTCC	2 cut(s)	807, 837
Bsc4I	CCNNNNNNNGG	3 cut(s)	478, 704, 1002
Bse118I	RCCGGY	1 cut(s)	395
Bse3DI	GCAATG	2 cut(s)	590, 993
BseAI	TCCGGA	1 cut(s)	508
BseLI	CCNNNNNNNGG	3 cut(s)	478, 704, 1002
BseMI	GCAATG	2 cut(s)	590, 993
BseMII	CTCAG	2 cut(s)	426, 888
BseSI	GKGCMC	2 cut(s)	274, 1043
BseXI	GCAGC	3 cut(s)	232, 253, 805
BseYI	CCCAGC	2 cut(s)	267, 930
Bsh1236I	CGCG	4 cut(s)	192, 213, 234, 282
Bsh1285I	CGRYCG	2 cut(s)	190, 747
BshFI	GGCC	2 cut(s)	272, 329
BsiEI	CGRYCG	2 cut(s)	190, 747
BsiHKAI	GWGCWC	2 cut(s)	312, 1043
BsiHKCI	CYCGRG	1 cut(s)	613
BsiSI	CCGG	2 cut(s)	396, 509
BslFI	GGGAC	2 cut(s)	184, 667
BslI	CCNNNNNNNGG	3 cut(s)	478, 704, 1002
BsmAI	GTCTC	2 cut(s)	371, 431
BsmFI	GGGAC	2 cut(s)	184, 667
BsnI	GGCC	2 cut(s)	272, 329
Bso31I	GGTCTC	1 cut(s)	371
BsoBI	CYCGRG	1 cut(s)	613
Bsp120I	GGGCCC	1 cut(s)	270
Bsp1286I	GDGCHC	3 cut(s)	274, 312, 1043
Bsp13I	TCCGGA	1 cut(s)	508
BspACI	CCGC	8 cut(s)	118, 190, 202, 211, 232, 280, 651, 928
BspANI	GGCC	2 cut(s)	272, 329
BspCNI	CTCAG	2 cut(s)	427, 889
BspEI	TCCGGA	1 cut(s)	508
BspFNI	CGCG	4 cut(s)	192, 213, 234, 282
BspLI	GGNNCC	6 cut(s)	209, 230, 251, 272, 655, 959
BspMAI	CTGCAG	2 cut(s)	721, 823
BspQI	GCTCTTC	2 cut(s)	210, 524
BspTNI	GGTCTC	1 cut(s)	371
BsrDI	GCAATG	2 cut(s)	590, 993
BsrFI	RCCGGY	1 cut(s)	395
BssAI	RCCGGY	1 cut(s)	395
BssNI	GRCGYC	1 cut(s)	693
Bst4CI	ACNGT	4 cut(s)	745, 784, 1083, 1171
Bst6I	CTCTTC	7 cut(s)	60, 166, 181, 210, 524, 561, 1095
BstACI	GRCGYC	1 cut(s)	693
BstC8I	GCNNGC	5 cut(s)	206, 248, 397, 681, 1064
BstDEI	CTNAG	5 cut(s)	435, 688, 897, 950, 1176
BstFNI	CGCG	4 cut(s)	192, 213, 234, 282
BstH2I	RGCGCY	2 cut(s)	247, 268
BstHHI	GCGC	2 cut(s)	246, 267
BstMAI	GTCTC	2 cut(s)	371, 431
BstMCI	CGRYCG	2 cut(s)	190, 747
BstMWI	GCNNNNNNNGC	7 cut(s)	210, 226, 247, 392, 648, 1038, 1172
BstSFI	CTRYAG	2 cut(s)	717, 819
BstSLI	GKGCMC	2 cut(s)	274, 1043
BstUI	CGCG	4 cut(s)	192, 213, 234, 282
BstV1I	GCAGC	3 cut(s)	232, 253, 805
BstV2I	GAAGAC	1 cut(s)	630
BstXI	CCANNNNNNTGG	1 cut(s)	466
BsuRI	GGCC	2 cut(s)	272, 329
BtgZI	GCGATG	3 cut(s)	238, 367, 376
Cac8I	GCNNGC	5 cut(s)	206, 248, 397, 681, 1064
CfoI	GCGC	2 cut(s)	246, 267
Cfr10I	RCCGGY	1 cut(s)	395
Cfr13I	GGNCC	7 cut(s)	270, 271, 328, 469, 571, 654, 850
CseI	GACGC	1 cut(s)	701
Csp6I	GTAC	1 cut(s)	780
CviAII	CATG	2 cut(s)	628, 1133
CviQI	GTAC	1 cut(s)	780
DdeI	CTNAG	5 cut(s)	435, 688, 897, 950, 1176
DraIII	CACNNNGTG	1 cut(s)	1005
Eam1104I	CTCTTC	7 cut(s)	60, 166, 181, 210, 524, 561, 1095
EarI	CTCTTC	7 cut(s)	60, 166, 181, 210, 524, 561, 1095
Ecl136II	GAGCTC	1 cut(s)	310
Eco24I	GRGCYC	2 cut(s)	274, 312
Eco31I	GGTCTC	1 cut(s)	371
Eco47I	GGWCC	4 cut(s)	469, 571, 654, 850
Eco47III	AGCGCT	2 cut(s)	245, 266
Eco53kI	GAGCTC	1 cut(s)	310
Eco57I	CTGAAG	1 cut(s)	326
Eco88I	CYCGRG	1 cut(s)	613
EcoICRI	GAGCTC	1 cut(s)	310
EcoO109I	RGGNCCY	1 cut(s)	328
EcoT38I	GRGCYC	2 cut(s)	274, 312
FaeI	CATG	2 cut(s)	631, 1136
FaqI	GGGAC	2 cut(s)	184, 667
FatI	CATG	2 cut(s)	627, 1132
FauI	CCCGC	3 cut(s)	125, 209, 644
Fnu4HI	GCNGC	3 cut(s)	221, 242, 819
FriOI	GRGCYC	2 cut(s)	274, 312
Fsp4HI	GCNGC	3 cut(s)	221, 242, 819
FspBI	CTAG	4 cut(s)	332, 602, 917, 945
GlaI	GCGC	2 cut(s)	245, 266
GluI	GCNGC	3 cut(s)	221, 242, 819
GsaI	CCCAGC	2 cut(s)	271, 934
HaeII	RGCGCY	2 cut(s)	247, 268
HaeIII	GGCC	2 cut(s)	272, 329
HapII	CCGG	2 cut(s)	396, 509
HgaI	GACGC	1 cut(s)	701
HhaI	GCGC	2 cut(s)	246, 267
Hin1I	GRCGYC	1 cut(s)	693
Hin1II	CATG	2 cut(s)	631, 1136
Hin6I	GCGC	2 cut(s)	244, 265
HinP1I	GCGC	2 cut(s)	244, 265
HinfI	GANTC	5 cut(s)	197, 284, 371, 487, 938
HpaII	CCGG	2 cut(s)	396, 509
HphI	GGTGA	4 cut(s)	23, 575, 629, 986
Hpy166II	GTNNAC	2 cut(s)	1041, 1140
Hpy188I	TCNGA	8 cut(s)	254, 370, 376, 429, 559, 575, 847, 898
Hpy8I	GTNNAC	2 cut(s)	1041, 1140
Hpy99I	CGWCG	1 cut(s)	1154
HpyAV	CCTTC	8 cut(s)	142, 341, 511, 544, 554, 866, 1121, 1154
HpyCH4III	ACNGT	4 cut(s)	745, 784, 1083, 1171
HpyCH4IV	ACGT	2 cut(s)	661, 1152
HpyCH4V	TGCA	6 cut(s)	406, 583, 595, 719, 821, 1041
HpyF10VI	GCNNNNNNNGC	7 cut(s)	210, 226, 247, 392, 648, 1038, 1172
HpyF3I	CTNAG	5 cut(s)	435, 688, 897, 950, 1176
HpySE526I	ACGT	2 cut(s)	661, 1152
Hsp92I	GRCGYC	1 cut(s)	693
Hsp92II	CATG	2 cut(s)	631, 1136
HspAI	GCGC	2 cut(s)	244, 265
Kpn2I	TCCGGA	1 cut(s)	508
KroI	GCCGGC	1 cut(s)	395
KroNI	GCCGGC	1 cut(s)	397
LguI	GCTCTTC	2 cut(s)	210, 524
LmnI	GCTCC	7 cut(s)	213, 234, 238, 255, 294, 815, 1106
Lsp1109I	GCAGC	3 cut(s)	232, 253, 805
LweI	GCATC	2 cut(s)	346, 910
MaeI	CTAG	4 cut(s)	332, 602, 917, 945
MaeII	ACGT	2 cut(s)	661, 1152
MaeIII	GTNAC	7 cut(s)	95, 275, 712, 784, 823, 832, 877
MhlI	GDGCHC	3 cut(s)	274, 312, 1043
MluCI	AATT	7 cut(s)	166, 321, 464, 734, 753, 840, 1143
MlyI	GAGTC	3 cut(s)	206, 278, 380
MmeI	TCCRAC	2 cut(s)	348, 537
MroI	TCCGGA	1 cut(s)	508
MroNI	GCCGGC	1 cut(s)	395
MspA1I	CMGCKG	2 cut(s)	204, 930
MspI	CCGG	2 cut(s)	396, 509
MvnI	CGCG	4 cut(s)	192, 213, 234, 282
MwoI	GCNNNNNNNGC	7 cut(s)	210, 226, 247, 392, 648, 1038, 1172
NaeI	GCCGGC	1 cut(s)	397
NgoMIV	GCCGGC	1 cut(s)	395
NlaIII	CATG	2 cut(s)	631, 1136
NlaIV	GGNNCC	6 cut(s)	209, 230, 251, 272, 655, 959
NmeAIII	GCCGAG	1 cut(s)	331
NmuCI	GTSAC	3 cut(s)	275, 712, 784
PciSI	GCTCTTC	2 cut(s)	210, 524
PdiI	GCCGGC	1 cut(s)	397
PfeI	GAWTC	2 cut(s)	487, 938
PflFI	GACNNNGTC	1 cut(s)	442
PkrI	GCNGC	3 cut(s)	222, 243, 820
PleI	GAGTC	3 cut(s)	205, 278, 379
PpsI	GAGTC	3 cut(s)	205, 278, 379
Psp124BI	GAGCTC	1 cut(s)	312
PspFI	CCCAGC	2 cut(s)	267, 930
PspN4I	GGNNCC	6 cut(s)	209, 230, 251, 272, 655, 959
PspOMI	GGGCCC	1 cut(s)	270
PspPI	GGNCC	7 cut(s)	270, 271, 328, 469, 571, 654, 850
PstI	CTGCAG	2 cut(s)	721, 823
PsyI	GACNNNGTC	1 cut(s)	442
RsaI	GTAC	1 cut(s)	781
RsaNI	GTAC	1 cut(s)	780
SacI	GAGCTC	1 cut(s)	312
SapI	GCTCTTC	2 cut(s)	210, 524
SatI	GCNGC	3 cut(s)	221, 242, 819
Sau96I	GGNCC	7 cut(s)	270, 271, 328, 469, 571, 654, 850
ScaI	AGTACT	1 cut(s)	781
SchI	GAGTC	3 cut(s)	206, 278, 380
SduI	GDGCHC	3 cut(s)	274, 312, 1043
SfaNI	GCATC	2 cut(s)	346, 910
SfcI	CTRYAG	2 cut(s)	717, 819
SinI	GGWCC	4 cut(s)	469, 571, 654, 850
SmlI	CTYRAG	3 cut(s)	311, 646, 699
SmoI	CTYRAG	3 cut(s)	311, 646, 699
Sse9I	AATT	7 cut(s)	166, 321, 464, 734, 753, 840, 1143
SsiI	CCGC	8 cut(s)	118, 190, 202, 211, 232, 280, 651, 928
SspMI	CTAG	4 cut(s)	332, 602, 917, 945
SstI	GAGCTC	1 cut(s)	312
TaaI	ACNGT	4 cut(s)	745, 784, 1083, 1171
TaiI	ACGT	2 cut(s)	664, 1155
TaqI	TCGA	2 cut(s)	446, 1018
TaqII	GACCGA	1 cut(s)	671
TasI	AATT	7 cut(s)	166, 321, 464, 734, 753, 840, 1143
TatI	WGTACW	1 cut(s)	779
TfiI	GAWTC	2 cut(s)	487, 938
TseFI	GTSAC	3 cut(s)	275, 712, 784
TseI	GCWGC	3 cut(s)	220, 241, 818
Tsp45I	GTSAC	3 cut(s)	275, 712, 784
TspDTI	ATGAA	1 cut(s)	1004
TspGWI	ACGGA	1 cut(s)	431
Tth111I	GACNNNGTC	1 cut(s)	442
VneI	GTGCAC	1 cut(s)	1039
VpaK11BI	GGWCC	4 cut(s)	469, 571, 654, 850
XapI	RAATTY	3 cut(s)	166, 321, 840
XbaI	TCTAGA	1 cut(s)	944
XspI	CTAG	4 cut(s)	332, 602, 917, 945
ZrmI	AGTACT	1 cut(s)	781

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.