Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7989456.1

Orthogroup ID

OG0007818

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 514

Gene Structure 514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7989456.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 227 bp

cgttgctaaaatcaggattttactcgggtgaagaagacatggaattttccaacttctcaagcgggacagaacgggctgtcaagacttggcaagcctccataggtttgcctgaagatggaataatgaccgaagaacttcttgaaatattatttgacccaaaaactgagggcgctgttgaaacaaaggtatgttggattcatgaggtttcaggatacatttgtttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0006139 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009295 GO:0009314 GO:0009408 GO:0009416 GO:0009507 GO:0009508 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009657 GO:0009658 GO:0009889 GO:0009941 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016020 GO:0016043 GO:0016070 GO:0016853 GO:0016860 GO:0016864 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032774 GO:0034357 GO:0034641 GO:0034645 GO:0034654 GO:0042644 GO:0042646 GO:0042651 GO:0042793 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055035 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:0140096 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PG_binding_1

Protein Analysis

74

Amino Acids

8.26

Weight (kDa)

4.26

Isoelectric Point (pI)

45.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13670 AT4G13670 AT4G13670 AT4G13670
fragaria_vesca	FvH4_4g00470 FvH4_4g00470
malus_domestica	MD04G1005000.v1.1
prunus_persica	Prupe.1G004900_v2.0.a1 Prupe.3G076100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0385901
rosa_laevigata	RLG00000010204
rosa_multiflora	Rmu_co7989456.1_g000001 Rmu_sc0007400.1_g000001 Rmu_sc0008728.1_g000006
rosa_roxburghii	Rroxscaffold_5G00333490
rosa_rugosa	Rorug03G0302300 Rorug03G0302400 Rorug03G0302500
rosa_samantha	Rh4AG007100 Rh4BG004700 Rh4BG004800 Rh4CG007700 Rh4DG006700
rosa_wichuraiana	Rw4G000340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	62
AcsI	RAATTY	1 cut(s)	43
AcuI	CTGAAG	1 cut(s)	131
AfiI	CCNNNNNNNGG	1 cut(s)	115
AgsI	TTSAA	2 cut(s)	142, 178
Ama87I	CYCGRG	1 cut(s)	24
ApoI	RAATTY	1 cut(s)	43
Asp700I	GAANNNNTTC	1 cut(s)	134
AspLEI	GCGC	1 cut(s)	172
AsuHPI	GGTGA	1 cut(s)	40
AvaI	CYCGRG	1 cut(s)	24
BaeI	ACNNNNGTAYC	1 cut(s)	204
BbsI	GAAGAC	1 cut(s)	41
BccI	CCATC	1 cut(s)	109
BciVI	GTATCC	1 cut(s)	205
BfoI	RGCGCY	1 cut(s)	173
BfuI	GTATCC	1 cut(s)	205
BmeT110I	CYCGRG	1 cut(s)	24
BpiI	GAAGAC	1 cut(s)	41
BpuEI	CTTGAG	1 cut(s)	42
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMII	CTCAG	1 cut(s)	155
BsiHKCI	CYCGRG	1 cut(s)	24
BslFI	GGGAC	1 cut(s)	78
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmFI	GGGAC	1 cut(s)	78
BsoBI	CYCGRG	1 cut(s)	24
BspACI	CCGC	1 cut(s)	62
BspCNI	CTCAG	1 cut(s)	156
BspHI	TCATGA	1 cut(s)	198
BstC8I	GCNNGC	1 cut(s)	92
BstDEI	CTNAG	1 cut(s)	164
BstH2I	RGCGCY	1 cut(s)	173
BstHHI	GCGC	1 cut(s)	172
BstV2I	GAAGAC	1 cut(s)	41
BsuI	GTATCC	1 cut(s)	205
Cac8I	GCNNGC	1 cut(s)	92
CciI	TCATGA	1 cut(s)	198
CfoI	GCGC	1 cut(s)	172
CviAII	CATG	2 cut(s)	39, 199
CviJI	RGCY	2 cut(s)	76, 94
CviKI_1	RGCY	2 cut(s)	76, 94
DdeI	CTNAG	1 cut(s)	164
Eco57I	CTGAAG	1 cut(s)	131
Eco88I	CYCGRG	1 cut(s)	24
FaeI	CATG	2 cut(s)	42, 202
FaiI	YATR	4 cut(s)	40, 100, 189, 200
FalI	AAGNNNNNCTT	2 cut(s)	122, 154
FaqI	GGGAC	1 cut(s)	78
FatI	CATG	2 cut(s)	38, 198
FauI	CCCGC	1 cut(s)	55
GlaI	GCGC	1 cut(s)	171
HaeII	RGCGCY	1 cut(s)	173
HhaI	GCGC	1 cut(s)	172
Hin1II	CATG	2 cut(s)	42, 202
Hin6I	GCGC	1 cut(s)	170
HinP1I	GCGC	1 cut(s)	170
HinfI	GANTC	1 cut(s)	195
HphI	GGTGA	1 cut(s)	40
Hpy188III	TCNNGA	5 cut(s)	14, 81, 139, 199, 209
HpyF3I	CTNAG	1 cut(s)	164
Hsp92II	CATG	2 cut(s)	42, 202
HspAI	GCGC	1 cut(s)	170
LpnPI	CCDG	2 cut(s)	122, 194
MboII	GAAGA	4 cut(s)	43, 46, 124, 142
MluCI	AATT	1 cut(s)	43
MmeI	TCCRAC	2 cut(s)	74, 172
MnlI	CCTC	3 cut(s)	105, 159, 195
MroXI	GAANNNNTTC	1 cut(s)	134
NlaIII	CATG	2 cut(s)	42, 202
PagI	TCATGA	1 cut(s)	198
PdmI	GAANNNNTTC	1 cut(s)	134
PfeI	GAWTC	1 cut(s)	195
SetI	ASST	3 cut(s)	105, 188, 206
SmlI	CTYRAG	1 cut(s)	57
SmoI	CTYRAG	1 cut(s)	57
Sse9I	AATT	1 cut(s)	43
SsiI	CCGC	1 cut(s)	62
SspI	AATATT	1 cut(s)	146
TaqII	GACCGA	1 cut(s)	142
TasI	AATT	1 cut(s)	43
TfiI	GAWTC	1 cut(s)	195
TspDTI	ATGAA	1 cut(s)	187
XapI	RAATTY	1 cut(s)	43
XmnI	GAANNNNTTC	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.