AT4G16450

NADH-ubiquinone oxidoreductase 20.9 kDa

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011137
Physical Location & Seq
Forward (+)
9279909 .. 9280901
993 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G16450.2

Sequence Viewer

Length: 321 bp
ATGAATACTGACATCACTGCCTTGGAGAAGGCACAATACCCAGTGGTTGATCGGAATCCTGCTTTTACTAAAGTCGTCGGCAATTTCAGCACTCTCGATTACCTCCGTTTCTCTACTATCACCGGCATCTCCGTCACCGTCGGCTATCTCTCTGGGATTAAGCCTGGGATTAAGGGACCGTCGATGGTTACTGGAGGATTGATCGGGCTCATGGGAGGTTTCATGTATGCGTACCAGAACTCTGCCGGTAGACTCATGGGGTTTTTCCCTAATGATGGTGAAGTTGCTAGTTACCAGAAGCGTGGTGGTTTCTCCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NADH-u_ox-rdase

Protein Analysis

106

Amino Acids

11.34

Weight (kDa)

9.52

Isoelectric Point (pI)

12.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NADH-u_ox-rdase PF10785 11 - 89 4.6e-19 NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 250
AfaI GTAC 1 cut(s) 233
AfiI CCNNNNNNNGG 1 cut(s) 275
AjnI CCWGG 1 cut(s) 163
AspS9I GGNCC 1 cut(s) 176
AsuHPI GGTGA 3 cut(s) 112, 127, 290
AvaII GGWCC 1 cut(s) 176
BanII GRGCYC 1 cut(s) 210
BarI GAAGNNNNNNTAC 2 cut(s) 20, 52
BccI CCATC 2 cut(s) 178, 269
BciT130I CCWGG 1 cut(s) 165
BfaI CTAG 1 cut(s) 288
Bme1390I CCNGG 1 cut(s) 165
Bme18I GGWCC 1 cut(s) 176
BmgT120I GGNCC 1 cut(s) 176
BmiI GGNNCC 1 cut(s) 177
BmrFI CCNGG 1 cut(s) 165
BmrI ACTGGG 1 cut(s) 35
BmsI GCATC 1 cut(s) 135
BmuI ACTGGG 1 cut(s) 35
BpmI CTGGAG 1 cut(s) 213
BsaBI GATNNNNATC 1 cut(s) 54
BsaJI CCNNGG 2 cut(s) 21, 164
Bsc4I CCNNNNNNNGG 1 cut(s) 275
Bse118I RCCGGY 2 cut(s) 122, 245
Bse1I ACTGG 2 cut(s) 41, 196
Bse8I GATNNNNATC 1 cut(s) 54
BseBI CCWGG 1 cut(s) 165
BseDI CCNNGG 2 cut(s) 21, 164
BseJI GATNNNNATC 1 cut(s) 54
BseLI CCNNNNNNNGG 1 cut(s) 275
BseNI ACTGG 2 cut(s) 41, 196
BsiSI CCGG 2 cut(s) 123, 246
BslFI GGGAC 1 cut(s) 189
BslI CCNNNNNNNGG 1 cut(s) 275
BsmFI GGGAC 1 cut(s) 189
Bsp1286I GDGCHC 1 cut(s) 210
Bsp143I GATC 2 cut(s) 49, 201
BspLI GGNNCC 1 cut(s) 177
BsrFI RCCGGY 2 cut(s) 122, 245
BsrI ACTGG 2 cut(s) 41, 196
BssAI RCCGGY 2 cut(s) 122, 245
BssECI CCNNGG 2 cut(s) 21, 164
BssMI GATC 2 cut(s) 49, 201
BssT1I CCWWGG 1 cut(s) 21
Bst2UI CCWGG 1 cut(s) 165
Bst4CI ACNGT 2 cut(s) 139, 180
BstKTI GATC 2 cut(s) 52, 204
BstMBI GATC 2 cut(s) 49, 201
BstMWI GCNNNNNNNGC 1 cut(s) 87
BstNI CCWGG 1 cut(s) 165
BstSCI CCNGG 1 cut(s) 163
BstXI CCANNNNNNTGG 1 cut(s) 302
BtsI GCAGTG 1 cut(s) 15
BtsIMutI CAGTG 2 cut(s) 15, 48
Cfr10I RCCGGY 2 cut(s) 122, 245
Cfr13I GGNCC 1 cut(s) 176
Csp6I GTAC 1 cut(s) 232
CviAII CATG 3 cut(s) 211, 223, 256
CviJI RGCY 3 cut(s) 144, 163, 208
CviKI_1 RGCY 3 cut(s) 144, 163, 208
CviQI GTAC 1 cut(s) 232
DpnI GATC 2 cut(s) 51, 203
DpnII GATC 2 cut(s) 49, 201
Eco130I CCWWGG 1 cut(s) 21
Eco24I GRGCYC 1 cut(s) 210
Eco47I GGWCC 1 cut(s) 176
EcoRII CCWGG 1 cut(s) 163
EcoT14I CCWWGG 1 cut(s) 21
EcoT38I GRGCYC 1 cut(s) 210
ErhI CCWWGG 1 cut(s) 21
FaeI CATG 3 cut(s) 214, 226, 259
FaiI YATR 4 cut(s) 212, 224, 228, 257
FaqI GGGAC 1 cut(s) 189
FatI CATG 3 cut(s) 210, 222, 255
FblI GTMKAC 1 cut(s) 250
FriOI GRGCYC 1 cut(s) 210
FspBI CTAG 1 cut(s) 288
GsuI CTGGAG 1 cut(s) 213
HapII CCGG 2 cut(s) 123, 246
Hin1II CATG 3 cut(s) 214, 226, 259
HinfI GANTC 2 cut(s) 55, 252
HpaII CCGG 2 cut(s) 123, 246
HphI GGTGA 3 cut(s) 112, 127, 290
Hpy166II GTNNAC 1 cut(s) 251
Hpy188I TCNGA 1 cut(s) 54
Hpy188III TCNNGA 1 cut(s) 95
Hpy8I GTNNAC 1 cut(s) 251
Hpy99I CGWCG 3 cut(s) 80, 143, 184
HpyAV CCTTC 1 cut(s) 22
HpyCH4III ACNGT 2 cut(s) 139, 180
HpyF10VI GCNNNNNNNGC 1 cut(s) 87
Hsp92II CATG 3 cut(s) 214, 226, 259
Kzo9I GATC 2 cut(s) 49, 201
LweI GCATC 1 cut(s) 135
MaeI CTAG 1 cut(s) 288
MaeIII GTNAC 3 cut(s) 133, 187, 290
MalI GATC 2 cut(s) 51, 203
MboI GATC 2 cut(s) 49, 201
MhlI GDGCHC 1 cut(s) 210
MluCI AATT 1 cut(s) 82
MlyI GAGTC 1 cut(s) 246
MnlI CCTC 3 cut(s) 113, 188, 209
MseI TTAA 2 cut(s) 159, 171
MspI CCGG 2 cut(s) 123, 246
MspR9I CCNGG 1 cut(s) 165
MvaI CCWGG 1 cut(s) 165
MwoI GCNNNNNNNGC 1 cut(s) 87
NdeII GATC 2 cut(s) 49, 201
NlaIII CATG 3 cut(s) 214, 226, 259
NlaIV GGNNCC 1 cut(s) 177
NmuCI GTSAC 1 cut(s) 133
PfeI GAWTC 1 cut(s) 55
PleI GAGTC 1 cut(s) 246
PpsI GAGTC 1 cut(s) 246
Psp6I CCWGG 1 cut(s) 163
PspGI CCWGG 1 cut(s) 163
PspN4I GGNNCC 1 cut(s) 177
PspPI GGNCC 1 cut(s) 176
RsaI GTAC 1 cut(s) 233
RsaNI GTAC 1 cut(s) 232
SaqAI TTAA 2 cut(s) 159, 171
Sau3AI GATC 2 cut(s) 49, 201
Sau96I GGNCC 1 cut(s) 176
SchI GAGTC 1 cut(s) 246
ScrFI CCNGG 1 cut(s) 165
SduI GDGCHC 1 cut(s) 210
SetI ASST 2 cut(s) 105, 220
SfaNI GCATC 1 cut(s) 135
SinI GGWCC 1 cut(s) 176
Sse9I AATT 1 cut(s) 82
SspMI CTAG 1 cut(s) 288
StyD4I CCNGG 1 cut(s) 163
StyI CCWWGG 1 cut(s) 21
TaaI ACNGT 2 cut(s) 139, 180
TaqI TCGA 2 cut(s) 96, 182
TasI AATT 1 cut(s) 82
TfiI GAWTC 1 cut(s) 55
Tru1I TTAA 2 cut(s) 159, 171
Tru9I TTAA 2 cut(s) 159, 171
TscAI CASTG 2 cut(s) 22, 48
TseFI GTSAC 1 cut(s) 133
Tsp45I GTSAC 1 cut(s) 133
TspDTI ATGAA 2 cut(s) 17, 211
TspGWI ACGGA 2 cut(s) 95, 121
TspRI CASTG 2 cut(s) 22, 48
VpaK11BI GGWCC 1 cut(s) 176
XcmI CCANNNNNNNNNTGG 1 cut(s) 302
XmiI GTMKAC 1 cut(s) 250
XspI CTAG 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.