Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0011137

Physical Location & Seq

Genomic Coordinates Reverse (-)

29125564 .. 29126086

Gene Structure 523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g28570.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGTCGTCATCGTGTGCGTCGCACCGAGTGTTAGTGGGCGAGCGAGACCTGAACTACCGAGCTCAACAAAACCCGATTCTGAAGAGTGCTACGGCGTCGCTTCCGAAGTAGAAGTTGGAGAGAAGAAGATGAACACAGACATCACAGCGTCAACGAAGCCCGAGTACCCCGTCATAGATCGGAACCCTCCGTTCACCACAGTCGTCGGCAACTTCAGCACCCTCGATTACTTCCGTTTCGCCACCATCACCGGCGTCTCAGTTACGGTCGGCTACCTCTCCGGGATTAAGCCCGGGATTAGAGGGCCGTCAATGGTTACAGGAGGTTTGATTGGGGTAATGGGCGGATTCATGTACGCTTACCAGAACTCGGCGGGACGCCTCATGGGCTTTTTCCCCAACGACGATGAGGTAGCTCGTTACAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NADH-u_ox-rdase

Protein Analysis

144

Amino Acids

15.35

Weight (kDa)

6.26

Isoelectric Point (pI)

30.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16450 AT4G16450
fragaria_vesca	FvH4_3g00660
malus_domestica	MD00G1058600.v1.1 MD10G1336200.v1.1
prunus_persica	Prupe.4G007400_v2.0.a1
pyrus_communis	pycom05g32560 pycom10g28570
rosa_chinensis	RchiOBHm_Chr5g0000881
rosa_multiflora	Rmu_sc0000255.1_g000018 Rmu_sc0010050.1_g000007
rosa_roxburghii	Rroxscaffold_1G00075370
rosa_rugosa	Rorug04G0387300 Rorug04G0387400 Rorug04G0387500
rosa_samantha	Rh5AG007100 Rh5BG009200 Rh5CG007800 Rh5DG007700
rosa_wichuraiana	Rw5G000740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	345, 374
AcuI	CTGAAG	2 cut(s)	102, 199
AcyI	GRCGYC	3 cut(s)	96, 255, 379
AdeI	CACNNNGTG	1 cut(s)	29
AfaI	GTAC	2 cut(s)	167, 356
AfiI	CCNNNNNNNGG	1 cut(s)	370
AjuI	GAANNNNNNNTTGG	2 cut(s)	99, 131
AluBI	AGCT	2 cut(s)	63, 416
AluI	AGCT	2 cut(s)	63, 416
Alw21I	GWGCWC	1 cut(s)	65
Alw26I	GTCTC	2 cut(s)	40, 262
Ama87I	CYCGRG	2 cut(s)	161, 293
AoxI	GGCC	1 cut(s)	305
AspS9I	GGNCC	1 cut(s)	305
AsuC2I	CCSGG	3 cut(s)	283, 294, 295
AsuHPI	GGTGA	2 cut(s)	187, 241
AvaI	CYCGRG	2 cut(s)	161, 293
BanII	GRGCYC	1 cut(s)	65
BarI	GAAGNNNNNNTAC	2 cut(s)	149, 181
Bbv12I	GWGCWC	1 cut(s)	65
BccI	CCATC	1 cut(s)	254
BceAI	ACGGC	2 cut(s)	109, 292
BcnI	CCSGG	3 cut(s)	283, 294, 295
BcoDI	GTCTC	2 cut(s)	40, 262
BglI	GCCNNNNNGGC	1 cut(s)	387
Bme1390I	CCNGG	3 cut(s)	283, 294, 295
BmeT110I	CYCGRG	2 cut(s)	161, 293
BmgT120I	GGNCC	1 cut(s)	305
BmiI	GGNNCC	1 cut(s)	185
BmrFI	CCNGG	3 cut(s)	283, 294, 295
BpuMI	CCSGG	3 cut(s)	283, 294, 295
BsaHI	GRCGYC	3 cut(s)	96, 255, 379
BsaI	GGTCTC	1 cut(s)	40
BsaJI	CCNNGG	1 cut(s)	293
Bsc4I	CCNNNNNNNGG	1 cut(s)	370
Bse118I	RCCGGY	1 cut(s)	251
BseDI	CCNNGG	1 cut(s)	293
BseLI	CCNNNNNNNGG	1 cut(s)	370
BseMII	CTCAG	1 cut(s)	273
Bsh1285I	CGRYCG	1 cut(s)	270
BshFI	GGCC	1 cut(s)	307
BsiEI	CGRYCG	1 cut(s)	270
BsiHKAI	GWGCWC	1 cut(s)	65
BsiHKCI	CYCGRG	2 cut(s)	161, 293
BsiSI	CCGG	3 cut(s)	252, 282, 294
BslFI	GGGAC	1 cut(s)	390
BslI	CCNNNNNNNGG	1 cut(s)	370
BsmAI	GTCTC	2 cut(s)	40, 262
BsmBI	CGTCTC	1 cut(s)	262
BsmFI	GGGAC	1 cut(s)	390
BsnI	GGCC	1 cut(s)	307
Bso31I	GGTCTC	1 cut(s)	40
BsoBI	CYCGRG	2 cut(s)	161, 293
Bsp1286I	GDGCHC	1 cut(s)	65
Bsp143I	GATC	1 cut(s)	178
BspACI	CCGC	2 cut(s)	345, 374
BspANI	GGCC	1 cut(s)	307
BspCNI	CTCAG	1 cut(s)	272
BspLI	GGNNCC	1 cut(s)	185
BspTNI	GGTCTC	1 cut(s)	40
BsrFI	RCCGGY	1 cut(s)	251
BssAI	RCCGGY	1 cut(s)	251
BssECI	CCNNGG	1 cut(s)	293
BssMI	GATC	1 cut(s)	178
BssNI	GRCGYC	3 cut(s)	96, 255, 379
Bst4CI	ACNGT	2 cut(s)	202, 268
Bst6I	CTCTTC	1 cut(s)	78
BstACI	GRCGYC	3 cut(s)	96, 255, 379
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	1 cut(s)	259
BstKTI	GATC	1 cut(s)	181
BstMAI	GTCTC	2 cut(s)	40, 262
BstMBI	GATC	1 cut(s)	178
BstMCI	CGRYCG	1 cut(s)	270
BstMWI	GCNNNNNNNGC	2 cut(s)	216, 387
BstSCI	CCNGG	3 cut(s)	281, 292, 293
BsuRI	GGCC	1 cut(s)	307
Cac8I	GCNNGC	1 cut(s)	42
Cfr10I	RCCGGY	1 cut(s)	251
Cfr13I	GGNCC	1 cut(s)	305
Cfr9I	CCCGGG	1 cut(s)	293
CseI	GACGC	5 cut(s)	7, 85, 138, 244, 387
Csp6I	GTAC	2 cut(s)	166, 355
CviAII	CATG	2 cut(s)	352, 385
CviJI	RGCY	7 cut(s)	63, 160, 273, 292, 307, 390, 416
CviKI_1	RGCY	7 cut(s)	63, 160, 273, 292, 307, 390, 416
CviQI	GTAC	2 cut(s)	166, 355
DdeI	CTNAG	1 cut(s)	259
DpnI	GATC	1 cut(s)	180
DpnII	GATC	1 cut(s)	178
DraIII	CACNNNGTG	1 cut(s)	29
Eam1104I	CTCTTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	78
EciI	GGCGGA	1 cut(s)	360
Ecl136II	GAGCTC	1 cut(s)	63
Eco24I	GRGCYC	1 cut(s)	65
Eco31I	GGTCTC	1 cut(s)	40
Eco53kI	GAGCTC	1 cut(s)	63
Eco57I	CTGAAG	2 cut(s)	102, 199
Eco88I	CYCGRG	2 cut(s)	161, 293
EcoICRI	GAGCTC	1 cut(s)	63
EcoT38I	GRGCYC	1 cut(s)	65
Esp3I	CGTCTC	1 cut(s)	262
FaeI	CATG	2 cut(s)	355, 388
FaiI	YATR	3 cut(s)	176, 353, 386
FaqI	GGGAC	1 cut(s)	390
FatI	CATG	2 cut(s)	351, 384
FauI	CCCGC	1 cut(s)	367
FriOI	GRGCYC	1 cut(s)	65
HaeIII	GGCC	1 cut(s)	307
HapII	CCGG	3 cut(s)	252, 282, 294
HgaI	GACGC	5 cut(s)	7, 85, 138, 244, 387
Hin1I	GRCGYC	3 cut(s)	96, 255, 379
Hin1II	CATG	2 cut(s)	355, 388
HincII	GTYRAC	1 cut(s)	153
HindII	GTYRAC	1 cut(s)	153
HinfI	GANTC	2 cut(s)	77, 348
HpaII	CCGG	3 cut(s)	252, 282, 294
HphI	GGTGA	2 cut(s)	187, 241
Hpy166II	GTNNAC	2 cut(s)	153, 195
Hpy188I	TCNGA	3 cut(s)	82, 106, 183
Hpy8I	GTNNAC	2 cut(s)	153, 195
Hpy99I	CGWCG	4 cut(s)	23, 101, 209, 407
HpyCH4III	ACNGT	2 cut(s)	202, 268
HpyF10VI	GCNNNNNNNGC	2 cut(s)	216, 387
HpyF3I	CTNAG	1 cut(s)	259
Hsp92I	GRCGYC	3 cut(s)	96, 255, 379
Hsp92II	CATG	2 cut(s)	355, 388
Kzo9I	GATC	1 cut(s)	178
LpnPI	CCDG	6 cut(s)	63, 265, 295, 306, 307, 377
MaeIII	GTNAC	3 cut(s)	262, 316, 419
MalI	GATC	1 cut(s)	180
MboI	GATC	1 cut(s)	178
MboII	GAAGA	3 cut(s)	95, 136, 139
MhlI	GDGCHC	1 cut(s)	65
MmeI	TCCRAC	1 cut(s)	97
MnlI	CCTC	7 cut(s)	198, 233, 287, 296, 317, 392, 403
MseI	TTAA	1 cut(s)	288
MspI	CCGG	3 cut(s)	252, 282, 294
MspR9I	CCNGG	3 cut(s)	283, 294, 295
MwoI	GCNNNNNNNGC	2 cut(s)	216, 387
NciI	CCSGG	3 cut(s)	283, 294, 295
NdeII	GATC	1 cut(s)	178
NlaIII	CATG	2 cut(s)	355, 388
NlaIV	GGNNCC	1 cut(s)	185
NmeAIII	GCCGAG	1 cut(s)	350
PfeI	GAWTC	2 cut(s)	77, 348
PfoI	TCCNGGA	1 cut(s)	281
Psp124BI	GAGCTC	1 cut(s)	65
PspN4I	GGNNCC	1 cut(s)	185
PspPI	GGNCC	1 cut(s)	305
RsaI	GTAC	2 cut(s)	167, 356
RsaNI	GTAC	2 cut(s)	166, 355
SacI	GAGCTC	1 cut(s)	65
SaqAI	TTAA	1 cut(s)	288
Sau3AI	GATC	1 cut(s)	178
Sau96I	GGNCC	1 cut(s)	305
ScrFI	CCNGG	3 cut(s)	283, 294, 295
SduI	GDGCHC	1 cut(s)	65
SetI	ASST	6 cut(s)	52, 65, 279, 328, 414, 418
SgrAI	CRCCGGYG	1 cut(s)	251
SmaI	CCCGGG	1 cut(s)	295
SsiI	CCGC	2 cut(s)	345, 374
SstI	GAGCTC	1 cut(s)	65
StyD4I	CCNGG	3 cut(s)	281, 292, 293
TaaI	ACNGT	2 cut(s)	202, 268
TaqI	TCGA	1 cut(s)	225
TfiI	GAWTC	2 cut(s)	77, 348
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TspDTI	ATGAA	2 cut(s)	146, 340
TspGWI	ACGGA	2 cut(s)	180, 224
TspMI	CCCGGG	1 cut(s)	293
XmaI	CCCGGG	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.