Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000255.1

Orthogroup ID

OG0011137

Physical Location & Seq

Genomic Coordinates Forward (+)

83687 .. 84089

Gene Structure 403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000255.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

atgaacacagacatcacagcgtcgacgaagcccgagtacccggtcttagatcggaaccctcccttcaccagagtcgtcggcaatttcagcaccctcgactatttccgattcgccaccatcaccggcgtctccgtcaccgtcggctacctctccggaattaagccgggaattagagggccgtctatggtgaccggaggtctcattggagtgatgggcgggttcatgtacgcttaccagaactcggcgggtcgcatcatgggctttttccccaacgaccgtgaggtagcccattacaagaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NADH-u_ox-rdase

Protein Analysis

100

Amino Acids

10.92

Weight (kDa)

9.63

Isoelectric Point (pI)

18.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16450 AT4G16450
fragaria_vesca	FvH4_3g00660
malus_domestica	MD00G1058600.v1.1 MD10G1336200.v1.1
prunus_persica	Prupe.4G007400_v2.0.a1
pyrus_communis	pycom05g32560 pycom10g28570
rosa_chinensis	RchiOBHm_Chr5g0000881
rosa_multiflora	Rmu_sc0000255.1_g000018 Rmu_sc0010050.1_g000007
rosa_roxburghii	Rroxscaffold_1G00075370
rosa_rugosa	Rorug04G0387300 Rorug04G0387400 Rorug04G0387500
rosa_samantha	Rh5AG007100 Rh5BG009200 Rh5CG007800 Rh5DG007700
rosa_wichuraiana	Rw5G000740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	23
AccIII	TCCGGA	1 cut(s)	152
AciI	CCGC	2 cut(s)	216, 245
AcyI	GRCGYC	1 cut(s)	126
AfaI	GTAC	2 cut(s)	38, 227
AfiI	CCNNNNNNNGG	1 cut(s)	241
AhdI	GACNNNNNGTC	1 cut(s)	195
Alw26I	GTCTC	2 cut(s)	133, 203
Ama87I	CYCGRG	1 cut(s)	32
Aor13HI	TCCGGA	1 cut(s)	152
AoxI	GGCC	1 cut(s)	176
AspS9I	GGNCC	1 cut(s)	176
AsuC2I	CCSGG	2 cut(s)	41, 165
AsuHPI	GGTGA	4 cut(s)	58, 112, 127, 199
AvaI	CYCGRG	1 cut(s)	32
BarI	GAAGNNNNNNTAC	2 cut(s)	20, 52
BccI	CCATC	2 cut(s)	125, 205
BceAI	ACGGC	1 cut(s)	163
BcnI	CCSGG	2 cut(s)	41, 165
BcoDI	GTCTC	2 cut(s)	133, 203
Bme1390I	CCNGG	2 cut(s)	41, 165
BmeRI	GACNNNNNGTC	1 cut(s)	195
BmeT110I	CYCGRG	1 cut(s)	32
BmgT120I	GGNCC	1 cut(s)	176
BmiI	GGNNCC	1 cut(s)	56
BmrFI	CCNGG	2 cut(s)	41, 165
BmsI	GCATC	1 cut(s)	261
BpuMI	CCSGG	2 cut(s)	41, 165
BsaHI	GRCGYC	1 cut(s)	126
BsaI	GGTCTC	1 cut(s)	203
BsaWI	WCCGGW	2 cut(s)	152, 191
Bsc4I	CCNNNNNNNGG	1 cut(s)	241
Bse118I	RCCGGY	1 cut(s)	122
BseAI	TCCGGA	1 cut(s)	152
BseLI	CCNNNNNNNGG	1 cut(s)	241
Bsh1285I	CGRYCG	1 cut(s)	277
BshFI	GGCC	1 cut(s)	178
BsiEI	CGRYCG	1 cut(s)	277
BsiHKCI	CYCGRG	1 cut(s)	32
BsiSI	CCGG	5 cut(s)	41, 123, 153, 164, 192
BslI	CCNNNNNNNGG	1 cut(s)	241
BsmAI	GTCTC	2 cut(s)	133, 203
BsmBI	CGTCTC	1 cut(s)	133
BsnI	GGCC	1 cut(s)	178
Bso31I	GGTCTC	1 cut(s)	203
BsoBI	CYCGRG	1 cut(s)	32
Bsp13I	TCCGGA	1 cut(s)	152
Bsp143I	GATC	1 cut(s)	49
BspACI	CCGC	2 cut(s)	216, 245
BspANI	GGCC	1 cut(s)	178
BspEI	TCCGGA	1 cut(s)	152
BspLI	GGNNCC	1 cut(s)	56
BspTNI	GGTCTC	1 cut(s)	203
BsrFI	RCCGGY	1 cut(s)	122
BssAI	RCCGGY	1 cut(s)	122
BssMI	GATC	1 cut(s)	49
BssNI	GRCGYC	1 cut(s)	126
Bst4CI	ACNGT	2 cut(s)	139, 278
BstACI	GRCGYC	1 cut(s)	126
BstDEI	CTNAG	1 cut(s)	46
BstEII	GGTNACC	1 cut(s)	187
BstKTI	GATC	1 cut(s)	52
BstMAI	GTCTC	2 cut(s)	133, 203
BstMBI	GATC	1 cut(s)	49
BstMCI	CGRYCG	1 cut(s)	277
BstMWI	GCNNNNNNNGC	2 cut(s)	87, 258
BstPI	GGTNACC	1 cut(s)	187
BstSCI	CCNGG	2 cut(s)	39, 163
BsuRI	GGCC	1 cut(s)	178
Cfr10I	RCCGGY	1 cut(s)	122
Cfr13I	GGNCC	1 cut(s)	176
CseI	GACGC	2 cut(s)	9, 115
Csp6I	GTAC	2 cut(s)	37, 226
CviAII	CATG	2 cut(s)	223, 256
CviJI	RGCY	6 cut(s)	31, 144, 163, 178, 261, 287
CviKI_1	RGCY	6 cut(s)	31, 144, 163, 178, 261, 287
CviQI	GTAC	2 cut(s)	37, 226
DdeI	CTNAG	1 cut(s)	46
DpnI	GATC	1 cut(s)	51
DpnII	GATC	1 cut(s)	49
DriI	GACNNNNNGTC	1 cut(s)	195
Eam1105I	GACNNNNNGTC	1 cut(s)	195
Eco31I	GGTCTC	1 cut(s)	203
Eco88I	CYCGRG	1 cut(s)	32
Eco91I	GGTNACC	1 cut(s)	187
EcoO65I	GGTNACC	1 cut(s)	187
Esp3I	CGTCTC	1 cut(s)	133
FaeI	CATG	2 cut(s)	226, 259
FaiI	YATR	3 cut(s)	185, 224, 257
FatI	CATG	2 cut(s)	222, 255
FauI	CCCGC	2 cut(s)	209, 238
FblI	GTMKAC	1 cut(s)	23
HaeIII	GGCC	1 cut(s)	178
HapII	CCGG	5 cut(s)	41, 123, 153, 164, 192
HgaI	GACGC	2 cut(s)	9, 115
Hin1I	GRCGYC	1 cut(s)	126
Hin1II	CATG	2 cut(s)	226, 259
HincII	GTYRAC	1 cut(s)	24
HindII	GTYRAC	1 cut(s)	24
HinfI	GANTC	2 cut(s)	72, 108
HpaII	CCGG	5 cut(s)	41, 123, 153, 164, 192
HphI	GGTGA	4 cut(s)	58, 112, 127, 199
Hpy166II	GTNNAC	1 cut(s)	24
Hpy188I	TCNGA	2 cut(s)	54, 107
Hpy188III	TCNNGA	1 cut(s)	153
Hpy8I	GTNNAC	1 cut(s)	24
Hpy99I	CGWCG	4 cut(s)	25, 28, 80, 143
HpyAV	CCTTC	1 cut(s)	73
HpyCH4III	ACNGT	2 cut(s)	139, 278
HpyF10VI	GCNNNNNNNGC	2 cut(s)	87, 258
HpyF3I	CTNAG	1 cut(s)	46
Hsp92I	GRCGYC	1 cut(s)	126
Hsp92II	CATG	2 cut(s)	226, 259
Kpn2I	TCCGGA	1 cut(s)	152
Kzo9I	GATC	1 cut(s)	49
LpnPI	CCDG	7 cut(s)	54, 82, 136, 166, 177, 205, 248
LweI	GCATC	1 cut(s)	261
MaeIII	GTNAC	2 cut(s)	133, 187
MalI	GATC	1 cut(s)	51
MboI	GATC	1 cut(s)	49
MluCI	AATT	3 cut(s)	82, 156, 168
MlyI	GAGTC	1 cut(s)	81
MnlI	CCTC	6 cut(s)	69, 104, 158, 167, 188, 274
MroI	TCCGGA	1 cut(s)	152
MseI	TTAA	1 cut(s)	159
MslI	CAYNNNNRTG	1 cut(s)	206
MspI	CCGG	5 cut(s)	41, 123, 153, 164, 192
MspR9I	CCNGG	2 cut(s)	41, 165
MwoI	GCNNNNNNNGC	2 cut(s)	87, 258
NciI	CCSGG	2 cut(s)	41, 165
NdeII	GATC	1 cut(s)	49
NlaIII	CATG	2 cut(s)	226, 259
NlaIV	GGNNCC	1 cut(s)	56
NmeAIII	GCCGAG	1 cut(s)	221
NmuCI	GTSAC	2 cut(s)	133, 187
PfeI	GAWTC	1 cut(s)	108
PleI	GAGTC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	80
PspEI	GGTNACC	1 cut(s)	187
PspN4I	GGNNCC	1 cut(s)	56
PspPI	GGNCC	1 cut(s)	176
RsaI	GTAC	2 cut(s)	38, 227
RsaNI	GTAC	2 cut(s)	37, 226
RseI	CAYNNNNRTG	1 cut(s)	206
SalI	GTCGAC	1 cut(s)	22
SaqAI	TTAA	1 cut(s)	159
Sau3AI	GATC	1 cut(s)	49
Sau96I	GGNCC	1 cut(s)	176
SchI	GAGTC	1 cut(s)	81
ScrFI	CCNGG	2 cut(s)	41, 165
SetI	ASST	3 cut(s)	150, 199, 285
SfaNI	GCATC	1 cut(s)	261
SgrAI	CRCCGGYG	1 cut(s)	122
SgrDI	CGTCGACG	1 cut(s)	22
SmiMI	CAYNNNNRTG	1 cut(s)	206
Sse9I	AATT	3 cut(s)	82, 156, 168
SsiI	CCGC	2 cut(s)	216, 245
StyD4I	CCNGG	2 cut(s)	39, 163
TaaI	ACNGT	2 cut(s)	139, 278
TaqI	TCGA	2 cut(s)	23, 96
TasI	AATT	3 cut(s)	82, 156, 168
TfiI	GAWTC	1 cut(s)	108
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TseFI	GTSAC	2 cut(s)	133, 187
Tsp45I	GTSAC	2 cut(s)	133, 187
TspDTI	ATGAA	2 cut(s)	17, 211
TspGWI	ACGGA	1 cut(s)	121
XmiI	GTMKAC	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.