RchiOBHm_Chr5g0000881

NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0011137
Physical Location & Seq
Forward (+)
482548 .. 483421
874 bp
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UTR
Exon/CDS
Intron
PRQ28239

Sequence Viewer

Length: 303 bp
ATGAACACAGACATCACAGCGTCGACGAAGCCCGAGTACCCTGTCTTAGATCGGAACCCTCCCTTCACCAGAGTCGTCGGCAATTTCAGCACCCTCGACTATTTCCGATTCGCCACCATCACCGGCGTCTCCGTCACCGTCGGCTACCTCTCGGGAATTAAGCCGGGAATTAGAGGGCCGTCTATGGTGACCGGAGGTCTGATTGGAGTGATGGGCGGGTTCATGTACGCTTACCAGAACTCGGCGGGTCGCATCATGGGCTTTTTCCCCAACGACCGTGAGGTAGCCCATTACAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NADH-u_ox-rdase

Protein Analysis

100

Amino Acids

10.92

Weight (kDa)

9.63

Isoelectric Point (pI)

18.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NADH-u_ox-rdase PF10785 11 - 89 5e-19 NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 23
AciI CCGC 2 cut(s) 216, 245
AcyI GRCGYC 1 cut(s) 126
AfaI GTAC 2 cut(s) 38, 227
AfiI CCNNNNNNNGG 1 cut(s) 241
AhdI GACNNNNNGTC 1 cut(s) 195
Alw26I GTCTC 1 cut(s) 133
Ama87I CYCGRG 2 cut(s) 32, 151
AoxI GGCC 1 cut(s) 176
AspS9I GGNCC 1 cut(s) 176
AsuC2I CCSGG 1 cut(s) 165
AsuHPI GGTGA 4 cut(s) 58, 112, 127, 199
AvaI CYCGRG 2 cut(s) 32, 151
BarI GAAGNNNNNNTAC 2 cut(s) 20, 52
BccI CCATC 2 cut(s) 125, 205
BceAI ACGGC 1 cut(s) 163
BcnI CCSGG 1 cut(s) 165
BcoDI GTCTC 1 cut(s) 133
Bme1390I CCNGG 1 cut(s) 165
BmeRI GACNNNNNGTC 1 cut(s) 195
BmeT110I CYCGRG 2 cut(s) 32, 151
BmgT120I GGNCC 1 cut(s) 176
BmiI GGNNCC 1 cut(s) 56
BmrFI CCNGG 1 cut(s) 165
BmsI GCATC 1 cut(s) 261
BpuMI CCSGG 1 cut(s) 165
BsaHI GRCGYC 1 cut(s) 126
BsaWI WCCGGW 1 cut(s) 191
Bsc4I CCNNNNNNNGG 1 cut(s) 241
Bse118I RCCGGY 1 cut(s) 122
BseLI CCNNNNNNNGG 1 cut(s) 241
Bsh1285I CGRYCG 1 cut(s) 277
BshFI GGCC 1 cut(s) 178
BsiEI CGRYCG 1 cut(s) 277
BsiHKCI CYCGRG 2 cut(s) 32, 151
BsiSI CCGG 3 cut(s) 123, 164, 192
BslI CCNNNNNNNGG 1 cut(s) 241
BsmAI GTCTC 1 cut(s) 133
BsmBI CGTCTC 1 cut(s) 133
BsnI GGCC 1 cut(s) 178
BsoBI CYCGRG 2 cut(s) 32, 151
Bsp143I GATC 1 cut(s) 49
BspACI CCGC 2 cut(s) 216, 245
BspANI GGCC 1 cut(s) 178
BspLI GGNNCC 1 cut(s) 56
BsrFI RCCGGY 1 cut(s) 122
BssAI RCCGGY 1 cut(s) 122
BssMI GATC 1 cut(s) 49
BssNI GRCGYC 1 cut(s) 126
Bst4CI ACNGT 2 cut(s) 139, 278
BstACI GRCGYC 1 cut(s) 126
BstDEI CTNAG 1 cut(s) 46
BstEII GGTNACC 1 cut(s) 187
BstKTI GATC 1 cut(s) 52
BstMAI GTCTC 1 cut(s) 133
BstMBI GATC 1 cut(s) 49
BstMCI CGRYCG 1 cut(s) 277
BstMWI GCNNNNNNNGC 2 cut(s) 87, 258
BstPI GGTNACC 1 cut(s) 187
BstSCI CCNGG 1 cut(s) 163
BsuRI GGCC 1 cut(s) 178
Cfr10I RCCGGY 1 cut(s) 122
Cfr13I GGNCC 1 cut(s) 176
CseI GACGC 2 cut(s) 9, 115
Csp6I GTAC 2 cut(s) 37, 226
CviAII CATG 2 cut(s) 223, 256
CviJI RGCY 6 cut(s) 31, 144, 163, 178, 261, 287
CviKI_1 RGCY 6 cut(s) 31, 144, 163, 178, 261, 287
CviQI GTAC 2 cut(s) 37, 226
DdeI CTNAG 1 cut(s) 46
DpnI GATC 1 cut(s) 51
DpnII GATC 1 cut(s) 49
DriI GACNNNNNGTC 1 cut(s) 195
Eam1105I GACNNNNNGTC 1 cut(s) 195
Eco88I CYCGRG 2 cut(s) 32, 151
Eco91I GGTNACC 1 cut(s) 187
EcoO65I GGTNACC 1 cut(s) 187
Esp3I CGTCTC 1 cut(s) 133
FaeI CATG 2 cut(s) 226, 259
FaiI YATR 3 cut(s) 185, 224, 257
FatI CATG 2 cut(s) 222, 255
FauI CCCGC 2 cut(s) 209, 238
FblI GTMKAC 1 cut(s) 23
HaeIII GGCC 1 cut(s) 178
HapII CCGG 3 cut(s) 123, 164, 192
HgaI GACGC 2 cut(s) 9, 115
Hin1I GRCGYC 1 cut(s) 126
Hin1II CATG 2 cut(s) 226, 259
HincII GTYRAC 1 cut(s) 24
HindII GTYRAC 1 cut(s) 24
HinfI GANTC 2 cut(s) 72, 108
HpaII CCGG 3 cut(s) 123, 164, 192
HphI GGTGA 4 cut(s) 58, 112, 127, 199
Hpy166II GTNNAC 1 cut(s) 24
Hpy188I TCNGA 3 cut(s) 54, 107, 201
Hpy188III TCNNGA 1 cut(s) 153
Hpy8I GTNNAC 1 cut(s) 24
Hpy99I CGWCG 4 cut(s) 25, 28, 80, 143
HpyAV CCTTC 1 cut(s) 73
HpyCH4III ACNGT 2 cut(s) 139, 278
HpyF10VI GCNNNNNNNGC 2 cut(s) 87, 258
HpyF3I CTNAG 1 cut(s) 46
Hsp92I GRCGYC 1 cut(s) 126
Hsp92II CATG 2 cut(s) 226, 259
Kzo9I GATC 1 cut(s) 49
LpnPI CCDG 6 cut(s) 54, 82, 136, 177, 205, 248
LweI GCATC 1 cut(s) 261
MaeIII GTNAC 2 cut(s) 133, 187
MalI GATC 1 cut(s) 51
MboI GATC 1 cut(s) 49
MluCI AATT 3 cut(s) 82, 156, 168
MlyI GAGTC 1 cut(s) 81
MnlI CCTC 6 cut(s) 69, 104, 158, 167, 188, 274
MseI TTAA 1 cut(s) 159
MspI CCGG 3 cut(s) 123, 164, 192
MspR9I CCNGG 1 cut(s) 165
MwoI GCNNNNNNNGC 2 cut(s) 87, 258
NciI CCSGG 1 cut(s) 165
NdeII GATC 1 cut(s) 49
NlaIII CATG 2 cut(s) 226, 259
NlaIV GGNNCC 1 cut(s) 56
NmeAIII GCCGAG 1 cut(s) 221
NmuCI GTSAC 2 cut(s) 133, 187
PfeI GAWTC 1 cut(s) 108
PleI GAGTC 1 cut(s) 80
PpsI GAGTC 1 cut(s) 80
PspEI GGTNACC 1 cut(s) 187
PspN4I GGNNCC 1 cut(s) 56
PspPI GGNCC 1 cut(s) 176
RsaI GTAC 2 cut(s) 38, 227
RsaNI GTAC 2 cut(s) 37, 226
SalI GTCGAC 1 cut(s) 22
SaqAI TTAA 1 cut(s) 159
Sau3AI GATC 1 cut(s) 49
Sau96I GGNCC 1 cut(s) 176
SchI GAGTC 1 cut(s) 81
ScrFI CCNGG 1 cut(s) 165
SetI ASST 3 cut(s) 150, 199, 285
SfaNI GCATC 1 cut(s) 261
SgrAI CRCCGGYG 1 cut(s) 122
SgrDI CGTCGACG 1 cut(s) 22
Sse9I AATT 3 cut(s) 82, 156, 168
SsiI CCGC 2 cut(s) 216, 245
StyD4I CCNGG 1 cut(s) 163
TaaI ACNGT 2 cut(s) 139, 278
TaqI TCGA 2 cut(s) 23, 96
TasI AATT 3 cut(s) 82, 156, 168
TfiI GAWTC 1 cut(s) 108
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TseFI GTSAC 2 cut(s) 133, 187
Tsp45I GTSAC 2 cut(s) 133, 187
TspDTI ATGAA 2 cut(s) 17, 211
TspGWI ACGGA 1 cut(s) 121
XmiI GTMKAC 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.