Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005376

Physical Location & Seq

Genomic Coordinates Reverse (-)

9399865 .. 9401408

Gene Structure 1544 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G16720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGGTGCGTACAAGTATGTATCTGAGCTATGGAGGAAGAAACAGTCCGATGTGATGAGATTCCTCCAGAGGGTTAGGTGCTGGGAGTACAGACAGCAACCTTCGATTGTTCGTCTCGTCAGGCCTACTCGTCCTGATAAGGCTCGTCGTTTGGGTTACAAGGCCAAGCAGGGCTTTGTTGTGTACCGTGTACGTGTGAGACGTGGTGGACGCAAGAGGCCAGTGCCTAAGGGTATTGTGTATGGTAAGCCAACAAACCAGGGAGTGACACAACTCAAGTTCCAGCGTAGCAAGCGTTCTGTTGCTGAGGAGCGTGCTGGCAGGAAATTGGGTGGTCTCAGAGTTGTCAACTCTTACTGGCTCAATGAGGATTCGACCTACAAGTACTACGAGATCATCTTGGTTGACCCAGCACACAATGCTGTGCGTAATGACCCGAGAATCAACTGGATCTGCAACCCAGTTCACAAGCACCGTGAGCTCAGAGGACTTACCTCAGAGGGAAAGAAGAACAGAGGTCTCCGCGGAAAGGGTCACAACAACCACAAGAACCGTCCATCTCGCAGGGCTACATGGAAGAAAAACAACTCTCTCAGCCTTCGTCGTTACCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0031090 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L15e

Protein Analysis

204

Amino Acids

24.24

Weight (kDa)

11.44

Isoelectric Point (pI)

51.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L15e	PF00827	2 - 190	1.2e-91	Ribosomal L15

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16720 AT4G17390
fragaria_vesca	FvH4_5g19240
malus_domestica	MD04G1062000.v1.1 MD06G1055700.v1.1 MD14G1017500.v1.1
prunus_persica	Prupe.2G275400_v2.0.a1 Prupe.5G066200_v2.0.a1 Prupe.7G040900_v2.0.a1
pyrus_communis	pycom04g05560 pycom14g01540
rosa_chinensis	RchiOBHm_Chr1g0374091 RchiOBHm_Chr7g0203741
rosa_laevigata	RLG00000003508 RLG00000026764
rosa_multiflora	Rmu_sc0000876.1_g000037 Rmu_sc0001714.1_g000007 Rmu_sc0006924.1_g000011
rosa_roxburghii	Rroxscaffold_3G00253580 Rroxscaffold_4G00283750
rosa_rugosa	Rorug01G0380700
rosa_samantha	Rh1AG391400 Rh1BG355400 Rh1CG368400 Rh1DG386100 Rh7BG207300 Rh7DG215200
rosa_wichuraiana	Rw1G034420 Rw7G018140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	525
AciI	CCGC	2 cut(s)	523, 525
AclWI	GGATC	1 cut(s)	458
AfaI	GTAC	5 cut(s)	11, 89, 185, 192, 386
AfiI	CCNNNNNNNGG	2 cut(s)	70, 529
AflIII	ACRYGT	1 cut(s)	193
AjiI	CACGTC	1 cut(s)	203
AjnI	CCWGG	1 cut(s)	258
AluBI	AGCT	2 cut(s)	28, 481
AluI	AGCT	2 cut(s)	28, 481
Alw21I	GWGCWC	1 cut(s)	483
Alw26I	GTCTC	4 cut(s)	119, 193, 341, 524
AlwI	GGATC	1 cut(s)	458
Ama87I	CYCGRG	1 cut(s)	436
AoxI	GGCC	3 cut(s)	122, 162, 218
AvaI	CYCGRG	1 cut(s)	436
AxyI	CCTNAGG	1 cut(s)	228
BanII	GRGCYC	1 cut(s)	483
Bbv12I	GWGCWC	1 cut(s)	483
BbvCI	CCTCAGC	1 cut(s)	306
BccI	CCATC	1 cut(s)	565
BciT130I	CCWGG	1 cut(s)	260
BcoDI	GTCTC	4 cut(s)	119, 193, 341, 524
BmcAI	AGTACT	1 cut(s)	386
Bme1390I	CCNGG	1 cut(s)	260
BmeT110I	CYCGRG	1 cut(s)	436
BmgBI	CACGTC	1 cut(s)	203
BmrFI	CCNGG	1 cut(s)	260
BmrI	ACTGGG	1 cut(s)	455
BmuI	ACTGGG	1 cut(s)	455
BpmI	CTGGAG	1 cut(s)	50
Bpu10I	CCTNAGC	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	260
BsaAI	YACGTR	1 cut(s)	194
BsaI	GGTCTC	2 cut(s)	341, 524
BsaJI	CCNNGG	2 cut(s)	259, 523
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 529
Bse1I	ACTGG	4 cut(s)	221, 362, 452, 461
Bse21I	CCTNAGG	1 cut(s)	228
BseBI	CCWGG	1 cut(s)	260
BseDI	CCNNGG	2 cut(s)	259, 523
BseLI	CCNNNNNNNGG	2 cut(s)	70, 529
BseMII	CTCAG	6 cut(s)	15, 297, 352, 496, 510, 607
BseNI	ACTGG	4 cut(s)	221, 362, 452, 461
BseRI	GAGGAG	1 cut(s)	323
BseYI	CCCAGC	2 cut(s)	81, 409
Bsh1236I	CGCG	1 cut(s)	525
BshFI	GGCC	3 cut(s)	124, 164, 220
BsiHKAI	GWGCWC	1 cut(s)	483
BsiHKCI	CYCGRG	1 cut(s)	436
BslI	CCNNNNNNNGG	2 cut(s)	70, 529
BsmAI	GTCTC	4 cut(s)	119, 193, 341, 524
BsmBI	CGTCTC	2 cut(s)	119, 193
BsnI	GGCC	3 cut(s)	124, 164, 220
Bso31I	GGTCTC	2 cut(s)	341, 524
BsoBI	CYCGRG	1 cut(s)	436
Bsp1286I	GDGCHC	1 cut(s)	483
Bsp143I	GATC	2 cut(s)	393, 450
BspACI	CCGC	2 cut(s)	523, 525
BspANI	GGCC	3 cut(s)	124, 164, 220
BspCNI	CTCAG	6 cut(s)	16, 298, 351, 495, 509, 606
BspFNI	CGCG	1 cut(s)	525
BspPI	GGATC	1 cut(s)	458
BspTNI	GGTCTC	2 cut(s)	341, 524
BsrI	ACTGG	4 cut(s)	221, 362, 452, 461
BssECI	CCNNGG	2 cut(s)	259, 523
BssMI	GATC	2 cut(s)	393, 450
Bst2UI	CCWGG	1 cut(s)	260
Bst4CI	ACNGT	5 cut(s)	45, 188, 476, 554, 611
BstAPI	GCANNNNNTGC	1 cut(s)	419
BstBAI	YACGTR	1 cut(s)	194
BstC8I	GCNNGC	3 cut(s)	293, 315, 319
BstDEI	CTNAG	7 cut(s)	24, 228, 306, 338, 482, 496, 593
BstDSI	CCRYGG	1 cut(s)	523
BstFNI	CGCG	1 cut(s)	525
BstKTI	GATC	2 cut(s)	396, 453
BstMAI	GTCTC	4 cut(s)	119, 193, 341, 524
BstMBI	GATC	2 cut(s)	393, 450
BstMWI	GCNNNNNNNGC	3 cut(s)	292, 419, 478
BstNI	CCWGG	1 cut(s)	260
BstSCI	CCNGG	1 cut(s)	258
BstUI	CGCG	1 cut(s)	525
BstX2I	RGATCY	1 cut(s)	450
BstYI	RGATCY	1 cut(s)	450
Bsu36I	CCTNAGG	1 cut(s)	228
BsuRI	GGCC	3 cut(s)	124, 164, 220
BtgI	CCRYGG	1 cut(s)	523
BtrI	CACGTC	1 cut(s)	203
BtsIMutI	CAGTG	1 cut(s)	228
Cac8I	GCNNGC	3 cut(s)	293, 315, 319
Cfr42I	CCGCGG	1 cut(s)	526
CseI	GACGC	1 cut(s)	219
Csp6I	GTAC	5 cut(s)	10, 88, 184, 191, 385
CviAII	CATG	1 cut(s)	573
CviQI	GTAC	5 cut(s)	10, 88, 184, 191, 385
DdeI	CTNAG	7 cut(s)	24, 228, 306, 338, 482, 496, 593
DpnI	GATC	2 cut(s)	395, 452
DpnII	GATC	2 cut(s)	393, 450
Ecl136II	GAGCTC	1 cut(s)	481
Eco147I	AGGCCT	1 cut(s)	124
Eco24I	GRGCYC	1 cut(s)	483
Eco31I	GGTCTC	2 cut(s)	341, 524
Eco53kI	GAGCTC	1 cut(s)	481
Eco81I	CCTNAGG	1 cut(s)	228
Eco88I	CYCGRG	1 cut(s)	436
EcoICRI	GAGCTC	1 cut(s)	481
EcoRII	CCWGG	1 cut(s)	258
EcoT38I	GRGCYC	1 cut(s)	483
Esp3I	CGTCTC	2 cut(s)	119, 193
FaeI	CATG	1 cut(s)	576
FaiI	YATR	4 cut(s)	18, 31, 243, 574
FalI	AAGNNNNNCTT	2 cut(s)	158, 190
FatI	CATG	1 cut(s)	572
FriOI	GRGCYC	1 cut(s)	483
GsaI	CCCAGC	2 cut(s)	85, 413
GsuI	CTGGAG	1 cut(s)	50
HaeIII	GGCC	3 cut(s)	124, 164, 220
HgaI	GACGC	1 cut(s)	219
Hin1II	CATG	1 cut(s)	576
HincII	GTYRAC	2 cut(s)	349, 406
HindII	GTYRAC	2 cut(s)	349, 406
HinfI	GANTC	3 cut(s)	60, 371, 441
Hpy166II	GTNNAC	6 cut(s)	184, 191, 209, 349, 406, 466
Hpy188I	TCNGA	5 cut(s)	25, 49, 341, 485, 499
Hpy188III	TCNNGA	2 cut(s)	67, 134
Hpy8I	GTNNAC	6 cut(s)	184, 191, 209, 349, 406, 466
Hpy99I	CGWCG	2 cut(s)	150, 606
HpyAV	CCTTC	2 cut(s)	111, 608
HpyCH4III	ACNGT	5 cut(s)	45, 188, 476, 554, 611
HpyCH4IV	ACGT	2 cut(s)	193, 202
HpyCH4V	TGCA	1 cut(s)	456
HpyF10VI	GCNNNNNNNGC	3 cut(s)	292, 419, 478
HpyF3I	CTNAG	7 cut(s)	24, 228, 306, 338, 482, 496, 593
HpySE526I	ACGT	2 cut(s)	193, 202
Hsp92II	CATG	1 cut(s)	576
KspI	CCGCGG	1 cut(s)	526
Kzo9I	GATC	2 cut(s)	393, 450
LmnI	GCTCC	1 cut(s)	310
MaeII	ACGT	2 cut(s)	193, 202
MaeIII	GTNAC	4 cut(s)	155, 265, 533, 605
MalI	GATC	2 cut(s)	395, 452
MboI	GATC	2 cut(s)	393, 450
MboII	GAAGA	3 cut(s)	49, 520, 589
MflI	RGATCY	1 cut(s)	450
MhlI	GDGCHC	1 cut(s)	483
MluCI	AATT	1 cut(s)	326
MspA1I	CMGCKG	1 cut(s)	525
MspR9I	CCNGG	1 cut(s)	260
MvaI	CCWGG	1 cut(s)	260
MvnI	CGCG	1 cut(s)	525
MwoI	GCNNNNNNNGC	3 cut(s)	292, 419, 478
NdeII	GATC	2 cut(s)	393, 450
NlaIII	CATG	1 cut(s)	576
NmuCI	GTSAC	2 cut(s)	265, 533
PceI	AGGCCT	1 cut(s)	124
PcsI	WCGNNNNNNNCGW	2 cut(s)	199, 607
PfeI	GAWTC	3 cut(s)	60, 371, 441
Ppu21I	YACGTR	1 cut(s)	194
Psp124BI	GAGCTC	1 cut(s)	483
Psp6I	CCWGG	1 cut(s)	258
PspFI	CCCAGC	2 cut(s)	81, 409
PspGI	CCWGG	1 cut(s)	258
PsrI	GAACNNNNNNTAC	2 cut(s)	280, 312
PsuI	RGATCY	1 cut(s)	450
RsaI	GTAC	5 cut(s)	11, 89, 185, 192, 386
RsaNI	GTAC	5 cut(s)	10, 88, 184, 191, 385
SacI	GAGCTC	1 cut(s)	483
SacII	CCGCGG	1 cut(s)	526
Sau3AI	GATC	2 cut(s)	393, 450
ScaI	AGTACT	1 cut(s)	386
ScrFI	CCNGG	1 cut(s)	260
SduI	GDGCHC	1 cut(s)	483
SetI	ASST	9 cut(s)	30, 80, 103, 196, 205, 380, 483, 497, 520
Sfr303I	CCGCGG	1 cut(s)	526
SgrBI	CCGCGG	1 cut(s)	526
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	1 cut(s)	326
SseBI	AGGCCT	1 cut(s)	124
SsiI	CCGC	2 cut(s)	523, 525
SstI	GAGCTC	1 cut(s)	483
StuI	AGGCCT	1 cut(s)	124
StyD4I	CCNGG	1 cut(s)	258
TaaI	ACNGT	5 cut(s)	45, 188, 476, 554, 611
TaiI	ACGT	2 cut(s)	196, 205
TaqI	TCGA	2 cut(s)	104, 374
TasI	AATT	1 cut(s)	326
TatI	WGTACW	2 cut(s)	87, 384
TfiI	GAWTC	3 cut(s)	60, 371, 441
TscAI	CASTG	1 cut(s)	228
TseFI	GTSAC	2 cut(s)	265, 533
Tsp45I	GTSAC	2 cut(s)	265, 533
TspRI	CASTG	1 cut(s)	228
ZrmI	AGTACT	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.