Prupe.7G040900_v2.0.a1

Belongs to the eukaryotic ribosomal protein eL15 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0005376
Physical Location & Seq
Reverse (-)
7656223 .. 7658518
2296 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G040900.1

Sequence Viewer

Length: 615 bp
ATGGGATTTTATAAGTATCCAACGGAGTTATGGAGGAAGAAGCAATCTGATGTGATGAGGTTTGTCCAGAGGGTGCGCTGTTGGGAATATCGCCAGCATCCTTCAATTGTCCGAGTCACAAGACCCACACGCCCTGACAAGGCTCGTCTTTTGGGTTACAAGGCCAAGCAGGGTTACGTTGTTTATCGTGTCCGTGTAAAGCGTGGCGGTCGCAAGAGGCCTGTTTCCAAGGGTATTGTATATGGGAAGCCCACAAACCAAGGTGTGACACAGCTGAAGTTTCAACGCAGCTTGAGGTCTGTTGCCGAGGAGCGCGCTGGCCGTAAATTGGCTGGCCTTAGGGTTCTGAATTCATACTGGATCAATGAGGATTCGACCTACAAGTACTTTGAGGTAATCCTGGTTGATGTTGCTCATAATGCTATCCGAAATGACCCAAGAATCAACTGGCTCTGCAATCCTGTTCACAAGCACAGGGAGCTTCGTGGGCTGACTTCGGCTGGAAAGAAGTGCAGGGGATTGCGTGGAAAGGGACACCTATACCACAAGGCACGTCCATCTCGCAGAGCAACTTGGAAGAGAAACACCACCCTCTCCCTTCGTCGGTACCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L15e

Protein Analysis

205

Amino Acids

24.21

Weight (kDa)

11.31

Isoelectric Point (pI)

41.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 12
Acc65I GGTACC 1 cut(s) 606
AccB1I GGYRCC 1 cut(s) 606
AccII CGCG 1 cut(s) 315
AciI CCGC 1 cut(s) 207
AclWI GGATC 1 cut(s) 368
AcoI YGGCCR 1 cut(s) 319
AcsI RAATTY 1 cut(s) 349
AcuI CTGAAG 1 cut(s) 296
AfaI GTAC 2 cut(s) 386, 608
AfiI CCNNNNNNNGG 3 cut(s) 139, 328, 603
AgsI TTSAA 2 cut(s) 105, 284
AjiI CACGTC 1 cut(s) 554
AjnI CCWGG 1 cut(s) 399
AluBI AGCT 3 cut(s) 274, 291, 481
AluI AGCT 3 cut(s) 274, 291, 481
AlwI GGATC 1 cut(s) 368
AoxI GGCC 4 cut(s) 162, 218, 319, 334
ApeKI GCWGC 1 cut(s) 288
ApoI RAATTY 1 cut(s) 349
Asp718I GGTACC 1 cut(s) 606
AspLEI GCGC 3 cut(s) 78, 315, 317
AxyI CCTNAGG 1 cut(s) 338
BanI GGYRCC 1 cut(s) 606
BbvI GCAGC 1 cut(s) 300
BccI CCATC 1 cut(s) 565
BceAI ACGGC 1 cut(s) 306
BciT130I CCWGG 1 cut(s) 401
BciVI GTATCC 1 cut(s) 27
BfuI GTATCC 1 cut(s) 27
BisI GCNGC 1 cut(s) 289
BlsI GCNGC 1 cut(s) 290
BmcAI AGTACT 1 cut(s) 386
Bme1390I CCNGG 1 cut(s) 401
BmgBI CACGTC 1 cut(s) 554
BmiI GGNNCC 1 cut(s) 608
BmrFI CCNGG 1 cut(s) 401
BmsI GCATC 1 cut(s) 106
BpuEI CTTGAG 1 cut(s) 313
BsaJI CCNNGG 3 cut(s) 228, 259, 306
Bsc4I CCNNNNNNNGG 3 cut(s) 139, 328, 603
Bse1I ACTGG 2 cut(s) 362, 452
Bse21I CCTNAGG 1 cut(s) 338
BseBI CCWGG 1 cut(s) 401
BseDI CCNNGG 3 cut(s) 228, 259, 306
BseGI GGATG 1 cut(s) 97
BseLI CCNNNNNNNGG 3 cut(s) 139, 328, 603
BseNI ACTGG 2 cut(s) 362, 452
BsePI GCGCGC 1 cut(s) 313
BseRI GAGGAG 1 cut(s) 323
BseXI GCAGC 1 cut(s) 300
BsgI GTGCAG 1 cut(s) 532
Bsh1236I CGCG 1 cut(s) 315
Bsh1285I CGRYCG 1 cut(s) 211
BshFI GGCC 4 cut(s) 164, 220, 321, 336
BshNI GGYRCC 1 cut(s) 606
BsiEI CGRYCG 1 cut(s) 211
BslFI GGGAC 1 cut(s) 546
BslI CCNNNNNNNGG 3 cut(s) 139, 328, 603
BsmFI GGGAC 1 cut(s) 546
BsnI GGCC 4 cut(s) 164, 220, 321, 336
Bsp143I GATC 1 cut(s) 360
BspACI CCGC 1 cut(s) 207
BspANI GGCC 4 cut(s) 164, 220, 321, 336
BspFNI CGCG 1 cut(s) 315
BspLI GGNNCC 1 cut(s) 608
BspPI GGATC 1 cut(s) 368
BspT107I GGYRCC 1 cut(s) 606
BsrI ACTGG 2 cut(s) 362, 452
BssECI CCNNGG 3 cut(s) 228, 259, 306
BssHII GCGCGC 1 cut(s) 313
BssMI GATC 1 cut(s) 360
BssT1I CCWWGG 2 cut(s) 228, 259
Bst2UI CCWGG 1 cut(s) 401
Bst4CI ACNGT 1 cut(s) 611
Bst6I CTCTTC 1 cut(s) 572
BstC8I GCNNGC 4 cut(s) 95, 315, 319, 334
BstDEI CTNAG 1 cut(s) 338
BstF5I GGATG 1 cut(s) 97
BstFNI CGCG 1 cut(s) 315
BstHHI GCGC 3 cut(s) 78, 315, 317
BstKTI GATC 1 cut(s) 363
BstMBI GATC 1 cut(s) 360
BstMCI CGRYCG 1 cut(s) 211
BstMWI GCNNNNNNNGC 3 cut(s) 419, 478, 487
BstNI CCWGG 1 cut(s) 401
BstSCI CCNGG 1 cut(s) 399
BstUI CGCG 1 cut(s) 315
BstV1I GCAGC 1 cut(s) 300
Bsu36I CCTNAGG 1 cut(s) 338
BsuI GTATCC 1 cut(s) 27
BsuRI GGCC 4 cut(s) 164, 220, 321, 336
BtrI CACGTC 1 cut(s) 554
BtsCI GGATG 1 cut(s) 97
Cac8I GCNNGC 4 cut(s) 95, 315, 319, 334
CfoI GCGC 3 cut(s) 78, 315, 317
Csp6I GTAC 2 cut(s) 385, 607
CviQI GTAC 2 cut(s) 385, 607
DdeI CTNAG 1 cut(s) 338
DpnI GATC 1 cut(s) 362
DpnII GATC 1 cut(s) 360
EaeI YGGCCR 1 cut(s) 319
Eam1104I CTCTTC 1 cut(s) 572
EarI CTCTTC 1 cut(s) 572
Eco130I CCWWGG 2 cut(s) 228, 259
Eco147I AGGCCT 1 cut(s) 220
Eco57I CTGAAG 1 cut(s) 296
Eco81I CCTNAGG 1 cut(s) 338
EcoRI GAATTC 1 cut(s) 349
EcoRII CCWGG 1 cut(s) 399
EcoT14I CCWWGG 2 cut(s) 228, 259
ErhI CCWWGG 2 cut(s) 228, 259
FaiI YATR 7 cut(s) 12, 31, 241, 243, 355, 417, 541
FaqI GGGAC 1 cut(s) 546
Fnu4HI GCNGC 1 cut(s) 289
FokI GGATG 1 cut(s) 84
Fsp4HI GCNGC 1 cut(s) 289
GlaI GCGC 3 cut(s) 77, 314, 316
GluI GCNGC 1 cut(s) 289
HaeIII GGCC 4 cut(s) 164, 220, 321, 336
HhaI GCGC 3 cut(s) 78, 315, 317
Hin6I GCGC 3 cut(s) 76, 313, 315
HinP1I GCGC 3 cut(s) 76, 313, 315
HinfI GANTC 3 cut(s) 114, 371, 441
Hpy166II GTNNAC 1 cut(s) 466
Hpy188I TCNGA 4 cut(s) 49, 113, 348, 428
Hpy188III TCNNGA 1 cut(s) 67
Hpy8I GTNNAC 1 cut(s) 466
Hpy99I CGWCG 1 cut(s) 606
HpyAV CCTTC 2 cut(s) 111, 608
HpyCH4III ACNGT 1 cut(s) 611
HpyCH4IV ACGT 2 cut(s) 177, 553
HpyCH4V TGCA 2 cut(s) 456, 513
HpyF10VI GCNNNNNNNGC 3 cut(s) 419, 478, 487
HpyF3I CTNAG 1 cut(s) 338
HpySE526I ACGT 2 cut(s) 177, 553
HspAI GCGC 3 cut(s) 76, 313, 315
KpnI GGTACC 1 cut(s) 610
Kzo9I GATC 1 cut(s) 360
LmnI GCTCC 2 cut(s) 310, 478
Lsp1109I GCAGC 1 cut(s) 300
LweI GCATC 1 cut(s) 106
MaeII ACGT 2 cut(s) 177, 553
MaeIII GTNAC 4 cut(s) 115, 155, 173, 265
MalI GATC 1 cut(s) 362
MboI GATC 1 cut(s) 360
MboII GAAGA 2 cut(s) 49, 589
MfeI CAATTG 1 cut(s) 105
MluCI AATT 3 cut(s) 105, 326, 349
MlyI GAGTC 1 cut(s) 123
MmeI TCCRAC 1 cut(s) 44
MnlI CCTC 9 cut(s) 27, 51, 63, 210, 288, 301, 361, 385, 602
MspA1I CMGCKG 1 cut(s) 274
MspR9I CCNGG 1 cut(s) 401
MunI CAATTG 1 cut(s) 105
MvaI CCWGG 1 cut(s) 401
MvnI CGCG 1 cut(s) 315
MwoI GCNNNNNNNGC 3 cut(s) 419, 478, 487
NdeII GATC 1 cut(s) 360
NlaIV GGNNCC 1 cut(s) 608
NmeAIII GCCGAG 1 cut(s) 331
NmuCI GTSAC 2 cut(s) 115, 265
PauI GCGCGC 1 cut(s) 313
PceI AGGCCT 1 cut(s) 220
PcsI WCGNNNNNNNCGW 1 cut(s) 607
PfeI GAWTC 2 cut(s) 371, 441
PkrI GCNGC 1 cut(s) 290
PleI GAGTC 1 cut(s) 122
PpsI GAGTC 1 cut(s) 122
PsiI TTATAA 1 cut(s) 12
Psp6I CCWGG 1 cut(s) 399
PspGI CCWGG 1 cut(s) 399
PspN4I GGNNCC 1 cut(s) 608
PteI GCGCGC 1 cut(s) 313
PvuII CAGCTG 1 cut(s) 274
RsaI GTAC 2 cut(s) 386, 608
RsaNI GTAC 2 cut(s) 385, 607
SatI GCNGC 1 cut(s) 289
Sau3AI GATC 1 cut(s) 360
ScaI AGTACT 1 cut(s) 386
SchI GAGTC 1 cut(s) 123
ScrFI CCNGG 1 cut(s) 401
SfaNI GCATC 1 cut(s) 106
SmlI CTYRAG 1 cut(s) 292
SmoI CTYRAG 1 cut(s) 292
Sse9I AATT 3 cut(s) 105, 326, 349
SseBI AGGCCT 1 cut(s) 220
SsiI CCGC 1 cut(s) 207
StuI AGGCCT 1 cut(s) 220
StyD4I CCNGG 1 cut(s) 399
StyI CCWWGG 2 cut(s) 228, 259
TaaI ACNGT 1 cut(s) 611
TaiI ACGT 2 cut(s) 180, 556
TaqI TCGA 1 cut(s) 374
TasI AATT 3 cut(s) 105, 326, 349
TatI WGTACW 1 cut(s) 384
TfiI GAWTC 2 cut(s) 371, 441
TseFI GTSAC 2 cut(s) 115, 265
TseI GCWGC 1 cut(s) 288
Tsp45I GTSAC 2 cut(s) 115, 265
TspDTI ATGAA 1 cut(s) 342
TspGWI ACGGA 2 cut(s) 38, 182
XapI RAATTY 1 cut(s) 349
XcmI CCANNNNNNNNNTGG 2 cut(s) 27, 444
ZrmI AGTACT 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.