Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0005376

Physical Location & Seq

Genomic Coordinates Forward (+)

5362751 .. 5366379

Gene Structure 3629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g05560.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGTCACTATATAATGTCCAGTTTTCGCCACCAACCTCACTCTGTGCTTTGAAAACCCTAGCCCCGACTGCCCAACCCTGTGCGTCGCAGCTCATTTCTGATCCGGCCATGGGGGCTTACAAGTACGTATCCGAGATATGGAGGAAGAAGCAGTCTGATGTGATGAGGTTCCTCCAGAGGGTCCGCTGCTGGGAGTATCGCCAACATCCTTCGATTGTCCGAGTCACAAGACCCACACGCCCTGATAAGGCGCGTCGTTTGGGTTACAAGGCCAAGCAGGGTTACGTTGTTTACCGTGTCCGTGTGAGGCGTGGTGGGCGCAAGAGGCCTGTTTCCAAGGGTATTGTATATGGAAAGCCCACAAACCAGGGTGTGACACAACTCAAGTTCCAGCGTAGCAAGAGGTCTGTTGCTGAGGAGCGTGCTGGGCGCAAGTTGGGAGGCCTCAGGGTTCTCAACTCATACTGGCTCAATGAGGATTCGACCTACAAGTACTTTGAGGTCATCATGGTTGATGTTGCTCACAATGCCATCAGGAACGACCCAAGAATCAACTGGCTCTGCAACCCTGTTCACAAGCACAGAGAGCTTCGTGGTCTTACTTCTGCTGGAAAGAAATACAGGGGTCTGCGCGGAAAGGGTCATCTGTACCACAAGAACCGACCTTCTCGCAGGGCAACATGGAAGAGAAATACCACCCTTTCACTCCGCCGTTACCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L15e

Protein Analysis

241

Amino Acids

28.08

Weight (kDa)

11.16

Isoelectric Point (pI)

45.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16720 AT4G17390
fragaria_vesca	FvH4_5g19240
malus_domestica	MD04G1062000.v1.1 MD06G1055700.v1.1 MD14G1017500.v1.1
prunus_persica	Prupe.2G275400_v2.0.a1 Prupe.5G066200_v2.0.a1 Prupe.7G040900_v2.0.a1
pyrus_communis	pycom04g05560 pycom14g01540
rosa_chinensis	RchiOBHm_Chr1g0374091 RchiOBHm_Chr7g0203741
rosa_laevigata	RLG00000003508 RLG00000026764
rosa_multiflora	Rmu_sc0000876.1_g000037 Rmu_sc0001714.1_g000007 Rmu_sc0006924.1_g000011
rosa_roxburghii	Rroxscaffold_3G00253580 Rroxscaffold_4G00283750
rosa_rugosa	Rorug01G0380700
rosa_samantha	Rh1AG391400 Rh1BG355400 Rh1CG368400 Rh1DG386100 Rh7BG207300 Rh7DG215200
rosa_wichuraiana	Rw1G034420 Rw7G018140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	253, 633
AciI	CCGC	3 cut(s)	184, 633, 709
AclWI	GGATC	1 cut(s)	95
AcoI	YGGCCR	1 cut(s)	105
AdeI	CACNNNGTG	1 cut(s)	44
AfaI	GTAC	3 cut(s)	125, 494, 650
AfiI	CCNNNNNNNGG	5 cut(s)	110, 138, 178, 190, 247
AgsI	TTSAA	1 cut(s)	52
AjnI	CCWGG	1 cut(s)	366
AluBI	AGCT	2 cut(s)	91, 589
AluI	AGCT	2 cut(s)	91, 589
AlwI	GGATC	1 cut(s)	95
AoxI	GGCC	4 cut(s)	105, 270, 326, 442
ApeKI	GCWGC	2 cut(s)	88, 186
AspLEI	GCGC	4 cut(s)	253, 321, 432, 633
AspS9I	GGNCC	1 cut(s)	181
AvaII	GGWCC	1 cut(s)	181
AxyI	CCTNAGG	1 cut(s)	446
BbvCI	CCTCAGC	1 cut(s)	414
BbvI	GCAGC	2 cut(s)	100, 173
BccI	CCATC	1 cut(s)	539
BceAI	ACGGC	1 cut(s)	696
BciT130I	CCWGG	1 cut(s)	368
BciVI	GTATCC	1 cut(s)	139
BfaI	CTAG	1 cut(s)	59
BfuI	GTATCC	1 cut(s)	139
BglI	GCCNNNNNGGC	1 cut(s)	113
BisI	GCNGC	2 cut(s)	89, 187
BlsI	GCNGC	2 cut(s)	90, 188
BmcAI	AGTACT	1 cut(s)	494
Bme1390I	CCNGG	1 cut(s)	368
Bme18I	GGWCC	1 cut(s)	181
BmgT120I	GGNCC	1 cut(s)	181
BmiI	GGNNCC	2 cut(s)	170, 182
BmrFI	CCNGG	1 cut(s)	368
BpmI	CTGGAG	1 cut(s)	158
Bpu10I	CCTNAGC	1 cut(s)	414
BpuEI	CTTGAG	1 cut(s)	368
BsaAI	YACGTR	1 cut(s)	127
BsaJI	CCNNGG	3 cut(s)	108, 336, 367
Bsc4I	CCNNNNNNNGG	5 cut(s)	110, 138, 178, 190, 247
Bse1I	ACTGG	3 cut(s)	19, 470, 560
Bse21I	CCTNAGG	1 cut(s)	446
BseBI	CCWGG	1 cut(s)	368
BseDI	CCNNGG	3 cut(s)	108, 336, 367
BseGI	GGATG	1 cut(s)	205
BseLI	CCNNNNNNNGG	5 cut(s)	110, 138, 178, 190, 247
BseMII	CTCAG	2 cut(s)	405, 460
BseNI	ACTGG	3 cut(s)	19, 470, 560
BseRI	GAGGAG	1 cut(s)	431
BseXI	GCAGC	2 cut(s)	100, 173
BseYI	CCCAGC	2 cut(s)	189, 425
Bsh1236I	CGCG	2 cut(s)	253, 633
BshFI	GGCC	4 cut(s)	107, 272, 328, 444
BsiSI	CCGG	1 cut(s)	104
BslI	CCNNNNNNNGG	5 cut(s)	110, 138, 178, 190, 247
BsnI	GGCC	4 cut(s)	107, 272, 328, 444
Bsp143I	GATC	1 cut(s)	100
Bsp19I	CCATGG	1 cut(s)	108
BspACI	CCGC	3 cut(s)	184, 633, 709
BspANI	GGCC	4 cut(s)	107, 272, 328, 444
BspCNI	CTCAG	2 cut(s)	406, 459
BspFNI	CGCG	2 cut(s)	253, 633
BspLI	GGNNCC	2 cut(s)	170, 182
BspPI	GGATC	1 cut(s)	95
BsrI	ACTGG	3 cut(s)	19, 470, 560
BssECI	CCNNGG	3 cut(s)	108, 336, 367
BssMI	GATC	1 cut(s)	100
BssT1I	CCWWGG	2 cut(s)	108, 336
Bst2UI	CCWGG	1 cut(s)	368
Bst4CI	ACNGT	2 cut(s)	296, 719
Bst6I	CTCTTC	1 cut(s)	680
BstBAI	YACGTR	1 cut(s)	127
BstC8I	GCNNGC	1 cut(s)	423
BstDEI	CTNAG	2 cut(s)	414, 446
BstDSI	CCRYGG	1 cut(s)	108
BstF5I	GGATG	1 cut(s)	205
BstFNI	CGCG	2 cut(s)	253, 633
BstHHI	GCGC	4 cut(s)	253, 321, 432, 633
BstKTI	GATC	1 cut(s)	103
BstMBI	GATC	1 cut(s)	100
BstMWI	GCNNNNNNNGC	7 cut(s)	68, 113, 316, 325, 427, 527, 586
BstNI	CCWGG	1 cut(s)	368
BstSCI	CCNGG	1 cut(s)	366
BstSNI	TACGTA	1 cut(s)	127
BstUI	CGCG	2 cut(s)	253, 633
BstV1I	GCAGC	2 cut(s)	100, 173
Bsu36I	CCTNAGG	1 cut(s)	446
BsuI	GTATCC	1 cut(s)	139
BsuRI	GGCC	4 cut(s)	107, 272, 328, 444
BtgI	CCRYGG	1 cut(s)	108
BtsCI	GGATG	1 cut(s)	205
Cac8I	GCNNGC	1 cut(s)	423
CfoI	GCGC	4 cut(s)	253, 321, 432, 633
Cfr13I	GGNCC	1 cut(s)	181
CseI	GACGC	2 cut(s)	72, 242
Csp6I	GTAC	3 cut(s)	124, 493, 649
CviAII	CATG	3 cut(s)	109, 508, 681
CviQI	GTAC	3 cut(s)	124, 493, 649
DdeI	CTNAG	2 cut(s)	414, 446
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
DraIII	CACNNNGTG	1 cut(s)	44
EaeI	YGGCCR	1 cut(s)	105
Eam1104I	CTCTTC	1 cut(s)	680
EarI	CTCTTC	1 cut(s)	680
EciI	GGCGGA	1 cut(s)	698
Eco105I	TACGTA	1 cut(s)	127
Eco130I	CCWWGG	2 cut(s)	108, 336
Eco147I	AGGCCT	2 cut(s)	328, 444
Eco47I	GGWCC	1 cut(s)	181
Eco81I	CCTNAGG	1 cut(s)	446
EcoRII	CCWGG	1 cut(s)	366
EcoT14I	CCWWGG	2 cut(s)	108, 336
ErhI	CCWWGG	2 cut(s)	108, 336
FaeI	CATG	3 cut(s)	112, 511, 684
FaiI	YATR	9 cut(s)	10, 12, 110, 139, 349, 351, 463, 509, 682
FatI	CATG	3 cut(s)	108, 507, 680
Fnu4HI	GCNGC	2 cut(s)	89, 187
FokI	GGATG	1 cut(s)	192
Fsp4HI	GCNGC	2 cut(s)	89, 187
FspBI	CTAG	1 cut(s)	59
GlaI	GCGC	4 cut(s)	252, 320, 431, 632
GluI	GCNGC	2 cut(s)	89, 187
GsaI	CCCAGC	2 cut(s)	193, 429
GsuI	CTGGAG	1 cut(s)	158
HaeIII	GGCC	4 cut(s)	107, 272, 328, 444
HapII	CCGG	1 cut(s)	104
HgaI	GACGC	2 cut(s)	72, 242
HhaI	GCGC	4 cut(s)	253, 321, 432, 633
Hin1II	CATG	3 cut(s)	112, 511, 684
Hin6I	GCGC	4 cut(s)	251, 319, 430, 631
HinP1I	GCGC	4 cut(s)	251, 319, 430, 631
HinfI	GANTC	3 cut(s)	222, 479, 549
HpaII	CCGG	1 cut(s)	104
Hpy166II	GTNNAC	2 cut(s)	292, 574
Hpy188I	TCNGA	4 cut(s)	100, 133, 157, 221
Hpy188III	TCNNGA	2 cut(s)	175, 535
Hpy8I	GTNNAC	2 cut(s)	292, 574
Hpy99I	CGWCG	2 cut(s)	88, 258
HpyAV	CCTTC	2 cut(s)	219, 675
HpyCH4III	ACNGT	2 cut(s)	296, 719
HpyCH4IV	ACGT	2 cut(s)	126, 285
HpyCH4V	TGCA	1 cut(s)	564
HpyF10VI	GCNNNNNNNGC	7 cut(s)	68, 113, 316, 325, 427, 527, 586
HpyF3I	CTNAG	2 cut(s)	414, 446
HpySE526I	ACGT	2 cut(s)	126, 285
Hsp92II	CATG	3 cut(s)	112, 511, 684
HspAI	GCGC	4 cut(s)	251, 319, 430, 631
Kzo9I	GATC	1 cut(s)	100
LmnI	GCTCC	1 cut(s)	418
Lsp1109I	GCAGC	2 cut(s)	100, 173
MaeI	CTAG	1 cut(s)	59
MaeII	ACGT	2 cut(s)	126, 285
MaeIII	GTNAC	6 cut(s)	3, 223, 263, 281, 373, 713
MalI	GATC	1 cut(s)	102
MboI	GATC	1 cut(s)	100
MboII	GAAGA	2 cut(s)	157, 697
MlyI	GAGTC	1 cut(s)	231
MspA1I	CMGCKG	1 cut(s)	186
MspI	CCGG	1 cut(s)	104
MspR9I	CCNGG	1 cut(s)	368
MvaI	CCWGG	1 cut(s)	368
MvnI	CGCG	2 cut(s)	253, 633
MwoI	GCNNNNNNNGC	7 cut(s)	68, 113, 316, 325, 427, 527, 586
NcoI	CCATGG	1 cut(s)	108
NdeII	GATC	1 cut(s)	100
NlaIII	CATG	3 cut(s)	112, 511, 684
NlaIV	GGNNCC	2 cut(s)	170, 182
NmuCI	GTSAC	3 cut(s)	3, 223, 373
PceI	AGGCCT	2 cut(s)	328, 444
PfeI	GAWTC	2 cut(s)	479, 549
PkrI	GCNGC	2 cut(s)	90, 188
PleI	GAGTC	1 cut(s)	230
PpsI	GAGTC	1 cut(s)	230
Ppu21I	YACGTR	1 cut(s)	127
Psp6I	CCWGG	1 cut(s)	366
PspFI	CCCAGC	2 cut(s)	189, 425
PspGI	CCWGG	1 cut(s)	366
PspN4I	GGNNCC	2 cut(s)	170, 182
PspPI	GGNCC	1 cut(s)	181
RsaI	GTAC	3 cut(s)	125, 494, 650
RsaNI	GTAC	3 cut(s)	124, 493, 649
SatI	GCNGC	2 cut(s)	89, 187
Sau3AI	GATC	1 cut(s)	100
Sau96I	GGNCC	1 cut(s)	181
ScaI	AGTACT	1 cut(s)	494
SchI	GAGTC	1 cut(s)	231
ScrFI	CCNGG	1 cut(s)	368
SinI	GGWCC	1 cut(s)	181
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
SnaBI	TACGTA	1 cut(s)	127
SseBI	AGGCCT	2 cut(s)	328, 444
SsiI	CCGC	3 cut(s)	184, 633, 709
SspMI	CTAG	1 cut(s)	59
StuI	AGGCCT	2 cut(s)	328, 444
StyD4I	CCNGG	1 cut(s)	366
StyI	CCWWGG	2 cut(s)	108, 336
TaaI	ACNGT	2 cut(s)	296, 719
TaiI	ACGT	2 cut(s)	129, 288
TaqI	TCGA	2 cut(s)	212, 482
TatI	WGTACW	1 cut(s)	492
TfiI	GAWTC	2 cut(s)	479, 549
TseFI	GTSAC	3 cut(s)	3, 223, 373
TseI	GCWGC	2 cut(s)	88, 186
Tsp45I	GTSAC	3 cut(s)	3, 223, 373
TspGWI	ACGGA	1 cut(s)	290
VpaK11BI	GGWCC	1 cut(s)	181
XcmI	CCANNNNNNNNNTGG	1 cut(s)	552
XspI	CTAG	1 cut(s)	59
ZrmI	AGTACT	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.