Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0005376

Physical Location & Seq

Genomic Coordinates Forward (+)

47664085 .. 47666131

Gene Structure 2047 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00253580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGGAGCTTACAAGTATGTGTCGGAGCTATGGCGGAAGAAGCAATCTGATGTGATGGGGTTCGTCCAGAGGGTTCGCTGCTGGGACTACCGTCAGCATCCTTCGATTGTCCGAGTCACAAGGCCCACCCGCCCTGACAAGGCTCGCCGTCTCGGCTACAAGGCCAAGCAGGCCTGCATTGTTTCTGTTATCCAGTGCATATGCTGGTTAAGCAGCATTCTGATGATTAAGCATCCTGTCAAGGGTGCTTGCGATCAGCATCTAGTTGATGTTCATCTGCTTGACTGTTCTTGTAAAACTTTGTTCCAGGGATATGTTATCTACCGTGTCCGTGTGAGGCGTGGTGGTCGCAAGAGGCCAGTTGCCAAGGGTATCGTGTATGGTAAGCCCACCAACCAGGGAGTTACTCAACTAAAGTTCCAACGCAGCAAGAGGTCTGTTGCTGAGGAGCGTGCTGGGCGTAAGTTGGGTGGCCTTAGGGTTCTCAATTCCTACTGGATCAATGAGGATTCTACCTACAAGTACTTTGAGGTTATTCTCGTTGATGTTGCTCACACAGTTATCAAGAAAGACCCAAGAATCAACTGGATTGTCAATCCTGTTCACAAGCACAGAGAGCTTCGTGGTCTCACATCTGCTGGGAAGAAATACAGGGGACTGCGTGGAAAGGGCCACAATTACCACAAGAATCGTCCTTCTCGCAGGGCAACCTGGAAGAGAAACAACACCCTCTCCCTTCGTCGCTACCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L15e

Protein Analysis

250

Amino Acids

29.29

Weight (kDa)

10.75

Isoelectric Point (pI)

42.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L15e	PF00827	2 - 63	2.3e-23	Ribosomal L15
Ribosomal_L15e	PF00827	103 - 236	6.7e-61	Ribosomal L15

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16720 AT4G17390
fragaria_vesca	FvH4_5g19240
malus_domestica	MD04G1062000.v1.1 MD06G1055700.v1.1 MD14G1017500.v1.1
prunus_persica	Prupe.2G275400_v2.0.a1 Prupe.5G066200_v2.0.a1 Prupe.7G040900_v2.0.a1
pyrus_communis	pycom04g05560 pycom14g01540
rosa_chinensis	RchiOBHm_Chr1g0374091 RchiOBHm_Chr7g0203741
rosa_laevigata	RLG00000003508 RLG00000026764
rosa_multiflora	Rmu_sc0000876.1_g000037 Rmu_sc0001714.1_g000007 Rmu_sc0006924.1_g000011
rosa_roxburghii	Rroxscaffold_3G00253580 Rroxscaffold_4G00283750
rosa_rugosa	Rorug01G0380700
rosa_samantha	Rh1AG391400 Rh1BG355400 Rh1CG368400 Rh1DG386100 Rh7BG207300 Rh7DG215200
rosa_wichuraiana	Rw1G034420 Rw7G018140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	34, 130
AclWI	GGATC	1 cut(s)	506
AfaI	GTAC	1 cut(s)	524
AfiI	CCNNNNNNNGG	2 cut(s)	139, 242
AjnI	CCWGG	3 cut(s)	306, 396, 710
AluBI	AGCT	3 cut(s)	8, 28, 619
AluI	AGCT	3 cut(s)	8, 28, 619
Alw26I	GTCTC	2 cut(s)	155, 632
AlwI	GGATC	1 cut(s)	506
AoxI	GGCC	6 cut(s)	122, 162, 171, 356, 472, 670
ApeKI	GCWGC	3 cut(s)	78, 213, 426
AspS9I	GGNCC	2 cut(s)	123, 670
AxyI	CCTNAGG	1 cut(s)	476
BbvCI	CCTCAGC	1 cut(s)	444
BbvI	GCAGC	3 cut(s)	65, 225, 438
BccI	CCATC	1 cut(s)	49
BceAI	ACGGC	1 cut(s)	132
BciT130I	CCWGG	3 cut(s)	308, 398, 712
BcoDI	GTCTC	2 cut(s)	155, 632
BfaI	CTAG	1 cut(s)	263
BglI	GCCNNNNNGGC	2 cut(s)	153, 170
BisI	GCNGC	3 cut(s)	79, 214, 427
BlsI	GCNGC	3 cut(s)	80, 215, 428
BmcAI	AGTACT	1 cut(s)	524
Bme1390I	CCNGG	3 cut(s)	308, 398, 712
BmgT120I	GGNCC	2 cut(s)	123, 670
BmrFI	CCNGG	3 cut(s)	308, 398, 712
BmsI	GCATC	3 cut(s)	106, 241, 268
BoxI	GACNNNNGTC	1 cut(s)	90
Bpu10I	CCTNAGC	1 cut(s)	444
BsaBI	GATNNNNATC	2 cut(s)	258, 273
BsaI	GGTCTC	1 cut(s)	632
BsaJI	CCNNGG	3 cut(s)	307, 366, 397
BsaXI	ACNNNNNCTCC	2 cut(s)	716, 746
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 242
Bse1I	ACTGG	4 cut(s)	193, 359, 500, 590
Bse21I	CCTNAGG	1 cut(s)	476
Bse8I	GATNNNNATC	2 cut(s)	258, 273
BseBI	CCWGG	3 cut(s)	308, 398, 712
BseDI	CCNNGG	3 cut(s)	307, 366, 397
BseGI	GGATG	2 cut(s)	97, 232
BseJI	GATNNNNATC	2 cut(s)	258, 273
BseLI	CCNNNNNNNGG	2 cut(s)	139, 242
BseMII	CTCAG	1 cut(s)	435
BseNI	ACTGG	4 cut(s)	193, 359, 500, 590
BseRI	GAGGAG	1 cut(s)	461
BseXI	GCAGC	3 cut(s)	65, 225, 438
BseYI	CCCAGC	3 cut(s)	81, 455, 638
BshFI	GGCC	6 cut(s)	124, 164, 173, 358, 474, 672
BslFI	GGGAC	2 cut(s)	98, 669
BslI	CCNNNNNNNGG	2 cut(s)	139, 242
BsmAI	GTCTC	2 cut(s)	155, 632
BsmBI	CGTCTC	1 cut(s)	155
BsmFI	GGGAC	2 cut(s)	98, 669
BsmI	GAATGC	1 cut(s)	216
BsnI	GGCC	6 cut(s)	124, 164, 173, 358, 474, 672
Bso31I	GGTCTC	1 cut(s)	632
Bsp143I	GATC	2 cut(s)	253, 498
BspACI	CCGC	2 cut(s)	34, 130
BspANI	GGCC	6 cut(s)	124, 164, 173, 358, 474, 672
BspCNI	CTCAG	1 cut(s)	436
BspPI	GGATC	1 cut(s)	506
BspTNI	GGTCTC	1 cut(s)	632
BsrI	ACTGG	4 cut(s)	193, 359, 500, 590
BssECI	CCNNGG	3 cut(s)	307, 366, 397
BssMI	GATC	2 cut(s)	253, 498
BssT1I	CCWWGG	1 cut(s)	366
Bst2UI	CCWGG	3 cut(s)	308, 398, 712
Bst4CI	ACNGT	5 cut(s)	92, 287, 326, 559, 749
Bst6I	CTCTTC	1 cut(s)	710
BstC8I	GCNNGC	5 cut(s)	145, 171, 175, 250, 453
BstDEI	CTNAG	2 cut(s)	444, 476
BstF5I	GGATG	2 cut(s)	97, 232
BstKTI	GATC	2 cut(s)	256, 501
BstMAI	GTCTC	2 cut(s)	155, 632
BstMBI	GATC	2 cut(s)	253, 498
BstMWI	GCNNNNNNNGC	6 cut(s)	40, 153, 170, 210, 457, 616
BstNI	CCWGG	3 cut(s)	308, 398, 712
BstPAI	GACNNNNGTC	1 cut(s)	90
BstSCI	CCNGG	3 cut(s)	306, 396, 710
BstV1I	GCAGC	3 cut(s)	65, 225, 438
Bsu36I	CCTNAGG	1 cut(s)	476
BsuRI	GGCC	6 cut(s)	124, 164, 173, 358, 474, 672
BtsCI	GGATG	2 cut(s)	97, 232
BtsIMutI	CAGTG	1 cut(s)	200
Cac8I	GCNNGC	5 cut(s)	145, 171, 175, 250, 453
Cfr13I	GGNCC	2 cut(s)	123, 670
Csp6I	GTAC	1 cut(s)	523
CviQI	GTAC	1 cut(s)	523
DdeI	CTNAG	2 cut(s)	444, 476
DpnI	GATC	2 cut(s)	255, 500
DpnII	GATC	2 cut(s)	253, 498
Eam1104I	CTCTTC	1 cut(s)	710
EarI	CTCTTC	1 cut(s)	710
EciI	GGCGGA	1 cut(s)	49
Eco130I	CCWWGG	1 cut(s)	366
Eco147I	AGGCCT	1 cut(s)	173
Eco31I	GGTCTC	1 cut(s)	632
Eco81I	CCTNAGG	1 cut(s)	476
EcoRII	CCWGG	3 cut(s)	306, 396, 710
EcoT14I	CCWWGG	1 cut(s)	366
ErhI	CCWWGG	1 cut(s)	366
Esp3I	CGTCTC	1 cut(s)	155
FaiI	YATR	6 cut(s)	18, 31, 200, 202, 315, 381
FaqI	GGGAC	2 cut(s)	98, 669
FauI	CCCGC	1 cut(s)	137
FauNDI	CATATG	1 cut(s)	200
Fnu4HI	GCNGC	3 cut(s)	79, 214, 427
FokI	GGATG	2 cut(s)	84, 219
Fsp4HI	GCNGC	3 cut(s)	79, 214, 427
FspBI	CTAG	1 cut(s)	263
GluI	GCNGC	3 cut(s)	79, 214, 427
GsaI	CCCAGC	3 cut(s)	85, 459, 642
HaeIII	GGCC	6 cut(s)	124, 164, 173, 358, 474, 672
HinfI	GANTC	4 cut(s)	114, 509, 579, 688
Hpy166II	GTNNAC	1 cut(s)	604
Hpy188I	TCNGA	4 cut(s)	25, 49, 113, 222
Hpy188III	TCNNGA	2 cut(s)	67, 565
Hpy8I	GTNNAC	1 cut(s)	604
Hpy99I	CGWCG	1 cut(s)	744
HpyAV	CCTTC	3 cut(s)	111, 705, 746
HpyCH4III	ACNGT	5 cut(s)	92, 287, 326, 559, 749
HpyCH4V	TGCA	2 cut(s)	177, 198
HpyF10VI	GCNNNNNNNGC	6 cut(s)	40, 153, 170, 210, 457, 616
HpyF3I	CTNAG	2 cut(s)	444, 476
Kzo9I	GATC	2 cut(s)	253, 498
LmnI	GCTCC	3 cut(s)	5, 25, 448
Lsp1109I	GCAGC	3 cut(s)	65, 225, 438
LweI	GCATC	3 cut(s)	106, 241, 268
MaeI	CTAG	1 cut(s)	263
MaeIII	GTNAC	2 cut(s)	115, 403
MalI	GATC	2 cut(s)	255, 500
MboI	GATC	2 cut(s)	253, 498
MboII	GAAGA	3 cut(s)	49, 655, 727
MluCI	AATT	2 cut(s)	487, 676
MlyI	GAGTC	1 cut(s)	123
MmeI	TCCRAC	1 cut(s)	445
MnlI	CCTC	8 cut(s)	63, 330, 348, 426, 439, 499, 523, 740
MseI	TTAA	2 cut(s)	209, 228
MslI	CAYNNNNRTG	1 cut(s)	221
MspR9I	CCNGG	3 cut(s)	308, 398, 712
Mva1269I	GAATGC	1 cut(s)	216
MvaI	CCWGG	3 cut(s)	308, 398, 712
MwoI	GCNNNNNNNGC	6 cut(s)	40, 153, 170, 210, 457, 616
NdeI	CATATG	1 cut(s)	200
NdeII	GATC	2 cut(s)	253, 498
NmeAIII	GCCGAG	1 cut(s)	132
NmuCI	GTSAC	1 cut(s)	115
PceI	AGGCCT	1 cut(s)	173
PcsI	WCGNNNNNNNCGW	1 cut(s)	745
PctI	GAATGC	1 cut(s)	216
PfeI	GAWTC	3 cut(s)	509, 579, 688
PkrI	GCNGC	3 cut(s)	80, 215, 428
PleI	GAGTC	1 cut(s)	122
PpsI	GAGTC	1 cut(s)	122
PshAI	GACNNNNGTC	1 cut(s)	90
Psp6I	CCWGG	3 cut(s)	306, 396, 710
PspFI	CCCAGC	3 cut(s)	81, 455, 638
PspGI	CCWGG	3 cut(s)	306, 396, 710
PspPI	GGNCC	2 cut(s)	123, 670
RsaI	GTAC	1 cut(s)	524
RsaNI	GTAC	1 cut(s)	523
RseI	CAYNNNNRTG	1 cut(s)	221
SaqAI	TTAA	2 cut(s)	209, 228
SatI	GCNGC	3 cut(s)	79, 214, 427
Sau3AI	GATC	2 cut(s)	253, 498
Sau96I	GGNCC	2 cut(s)	123, 670
ScaI	AGTACT	1 cut(s)	524
SchI	GAGTC	1 cut(s)	123
ScrFI	CCNGG	3 cut(s)	308, 398, 712
SetI	ASST	7 cut(s)	10, 30, 437, 518, 534, 621, 713
SfaNI	GCATC	3 cut(s)	106, 241, 268
SfiI	GGCCNNNNNGGCC	1 cut(s)	170
SmiMI	CAYNNNNRTG	1 cut(s)	221
Sse9I	AATT	2 cut(s)	487, 676
SseBI	AGGCCT	1 cut(s)	173
SsiI	CCGC	2 cut(s)	34, 130
SspMI	CTAG	1 cut(s)	263
StuI	AGGCCT	1 cut(s)	173
StyD4I	CCNGG	3 cut(s)	306, 396, 710
StyI	CCWWGG	1 cut(s)	366
TaaI	ACNGT	5 cut(s)	92, 287, 326, 559, 749
TaqI	TCGA	1 cut(s)	104
TasI	AATT	2 cut(s)	487, 676
TatI	WGTACW	1 cut(s)	522
TfiI	GAWTC	3 cut(s)	509, 579, 688
Tru1I	TTAA	2 cut(s)	209, 228
Tru9I	TTAA	2 cut(s)	209, 228
TscAI	CASTG	1 cut(s)	200
TseFI	GTSAC	1 cut(s)	115
TseI	GCWGC	3 cut(s)	78, 213, 426
Tsp45I	GTSAC	1 cut(s)	115
TspDTI	ATGAA	1 cut(s)	263
TspGWI	ACGGA	1 cut(s)	320
TspRI	CASTG	1 cut(s)	200
XcmI	CCANNNNNNNNNTGG	1 cut(s)	582
XspI	CTAG	1 cut(s)	263
ZrmI	AGTACT	1 cut(s)	524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.