MD06G1055700.v1.1

Belongs to the eukaryotic ribosomal protein eL15 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0005376
Physical Location & Seq
Forward (+)
8322915 .. 8325350
2436 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1055700.v1.1.491

Sequence Viewer

Length: 615 bp
ATGGGAGCCTACAAGTACGTGTCCGAGATATGGAGGAAGAAGCAGTCCGATGTGATGAGGTTCCTCCAGAGGGTCCGCTGCTGGGAGTATCGCCAACATCCCTCGATTGTCCGAGTCACAAGACCCACACGCCCTGATAAGGCACGTCGTTTGGGTTACAAGGCCAAGCAGGGTTATGTTGTTTACCGTGTCCGTGTGAGGCGTGGTGGTCGCAAGAGGCCTGTTTCCAAGGGTATTGTATATGGAAAGCCCACAAACCAGGGTGTGACACAACTCAAGTTCCAGCGTAGCAAGAGGTCTGTTGCTGAGGAGCGTGCAGGGCGCAAGTTGGGAGGCCTCAGGGTTCTCAACTCATACTGGCTCAATGAGGATTCGACCTACAAGTACTTTGAGGTTATCTTGGTTGATGTTGCTCACAATGCTATCAGGAATGACCCAAGAATCAACTGGCTTTGCAACCCTGTTCACAAGCACAGAGAGCTTCGTGGTCTTACTTCTGCTGGAAAGAAATACAGGGGTCTTCGTGGAAAGGGACATCTGTACCACAAGAACCGACCTTCTCGCAGAGCAACCTGGAAGAGAAACACCACCCTTTCACTCCGTCGTTACCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L15e

Protein Analysis

205

Amino Acids

24.31

Weight (kDa)

11.43

Isoelectric Point (pI)

45.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L15e PF00827 2 - 190 1.3e-91 Ribosomal L15
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 76
AfaI GTAC 3 cut(s) 17, 386, 542
AfiI CCNNNNNNNGG 4 cut(s) 30, 70, 82, 139
AflIII ACRYGT 1 cut(s) 18
AjiI CACGTC 1 cut(s) 146
AjnI CCWGG 2 cut(s) 258, 572
AluBI AGCT 1 cut(s) 481
AluI AGCT 1 cut(s) 481
AoxI GGCC 3 cut(s) 162, 218, 334
ApeKI GCWGC 1 cut(s) 78
AspLEI GCGC 1 cut(s) 324
AspS9I GGNCC 1 cut(s) 73
AvaII GGWCC 1 cut(s) 73
AxyI CCTNAGG 1 cut(s) 338
BaeI ACNNNNGTAYC 2 cut(s) 524, 557
BbsI GAAGAC 1 cut(s) 512
BbvCI CCTCAGC 1 cut(s) 306
BbvI GCAGC 1 cut(s) 65
BciT130I CCWGG 2 cut(s) 260, 574
BisI GCNGC 1 cut(s) 79
BlsI GCNGC 1 cut(s) 80
BmcAI AGTACT 1 cut(s) 386
Bme1390I CCNGG 2 cut(s) 260, 574
Bme18I GGWCC 1 cut(s) 73
BmgBI CACGTC 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 73
BmiI GGNNCC 3 cut(s) 7, 62, 74
BmrFI CCNGG 2 cut(s) 260, 574
BpiI GAAGAC 1 cut(s) 512
BpmI CTGGAG 1 cut(s) 50
Bpu10I CCTNAGC 1 cut(s) 306
BpuEI CTTGAG 1 cut(s) 260
BsaAI YACGTR 1 cut(s) 19
BsaJI CCNNGG 2 cut(s) 228, 259
Bsc4I CCNNNNNNNGG 4 cut(s) 30, 70, 82, 139
Bse1I ACTGG 2 cut(s) 362, 452
Bse21I CCTNAGG 1 cut(s) 338
BseBI CCWGG 2 cut(s) 260, 574
BseDI CCNNGG 2 cut(s) 228, 259
BseGI GGATG 1 cut(s) 97
BseLI CCNNNNNNNGG 4 cut(s) 30, 70, 82, 139
BseMII CTCAG 2 cut(s) 297, 352
BseNI ACTGG 2 cut(s) 362, 452
BseRI GAGGAG 1 cut(s) 323
BseXI GCAGC 1 cut(s) 65
BseYI CCCAGC 1 cut(s) 81
BsgI GTGCAG 1 cut(s) 336
BshFI GGCC 3 cut(s) 164, 220, 336
BslFI GGGAC 1 cut(s) 546
BslI CCNNNNNNNGG 4 cut(s) 30, 70, 82, 139
BsmFI GGGAC 1 cut(s) 546
BsnI GGCC 3 cut(s) 164, 220, 336
BspACI CCGC 1 cut(s) 76
BspANI GGCC 3 cut(s) 164, 220, 336
BspCNI CTCAG 2 cut(s) 298, 351
BspLI GGNNCC 3 cut(s) 7, 62, 74
BsrI ACTGG 2 cut(s) 362, 452
BssECI CCNNGG 2 cut(s) 228, 259
BssT1I CCWWGG 1 cut(s) 228
Bst2UI CCWGG 2 cut(s) 260, 574
Bst4CI ACNGT 2 cut(s) 188, 611
Bst6I CTCTTC 1 cut(s) 572
BstBAI YACGTR 1 cut(s) 19
BstC8I GCNNGC 1 cut(s) 315
BstDEI CTNAG 2 cut(s) 306, 338
BstF5I GGATG 1 cut(s) 97
BstHHI GCGC 1 cut(s) 324
BstMWI GCNNNNNNNGC 3 cut(s) 319, 419, 478
BstNI CCWGG 2 cut(s) 260, 574
BstSCI CCNGG 2 cut(s) 258, 572
BstV1I GCAGC 1 cut(s) 65
BstV2I GAAGAC 1 cut(s) 512
Bsu36I CCTNAGG 1 cut(s) 338
BsuRI GGCC 3 cut(s) 164, 220, 336
BtrI CACGTC 1 cut(s) 146
BtsCI GGATG 1 cut(s) 97
Cac8I GCNNGC 1 cut(s) 315
CfoI GCGC 1 cut(s) 324
Cfr13I GGNCC 1 cut(s) 73
Csp6I GTAC 3 cut(s) 16, 385, 541
CviJI RGCY 8 cut(s) 8, 164, 220, 250, 336, 361, 451, 481
CviKI_1 RGCY 8 cut(s) 8, 164, 220, 250, 336, 361, 451, 481
CviQI GTAC 3 cut(s) 16, 385, 541
DdeI CTNAG 2 cut(s) 306, 338
Eam1104I CTCTTC 1 cut(s) 572
EarI CTCTTC 1 cut(s) 572
Eco130I CCWWGG 1 cut(s) 228
Eco147I AGGCCT 2 cut(s) 220, 336
Eco47I GGWCC 1 cut(s) 73
Eco81I CCTNAGG 1 cut(s) 338
EcoRII CCWGG 2 cut(s) 258, 572
EcoT14I CCWWGG 1 cut(s) 228
ErhI CCWWGG 1 cut(s) 228
FaiI YATR 5 cut(s) 31, 177, 241, 243, 355
FaqI GGGAC 1 cut(s) 546
Fnu4HI GCNGC 1 cut(s) 79
FokI GGATG 1 cut(s) 84
Fsp4HI GCNGC 1 cut(s) 79
GlaI GCGC 1 cut(s) 323
GluI GCNGC 1 cut(s) 79
GsaI CCCAGC 1 cut(s) 85
GsuI CTGGAG 1 cut(s) 50
HaeIII GGCC 3 cut(s) 164, 220, 336
HhaI GCGC 1 cut(s) 324
Hin6I GCGC 1 cut(s) 322
HinP1I GCGC 1 cut(s) 322
HinfI GANTC 3 cut(s) 114, 371, 441
Hpy166II GTNNAC 2 cut(s) 184, 466
Hpy188I TCNGA 3 cut(s) 25, 49, 113
Hpy188III TCNNGA 2 cut(s) 67, 427
Hpy8I GTNNAC 2 cut(s) 184, 466
Hpy99I CGWCG 2 cut(s) 150, 606
HpyAV CCTTC 1 cut(s) 567
HpyCH4III ACNGT 2 cut(s) 188, 611
HpyCH4IV ACGT 2 cut(s) 18, 145
HpyCH4V TGCA 2 cut(s) 317, 456
HpyF10VI GCNNNNNNNGC 3 cut(s) 319, 419, 478
HpyF3I CTNAG 2 cut(s) 306, 338
HpySE526I ACGT 2 cut(s) 18, 145
HspAI GCGC 1 cut(s) 322
LmnI GCTCC 2 cut(s) 5, 310
Lsp1109I GCAGC 1 cut(s) 65
MaeII ACGT 2 cut(s) 18, 145
MaeIII GTNAC 4 cut(s) 115, 155, 265, 605
MboII GAAGA 3 cut(s) 49, 512, 589
MlyI GAGTC 1 cut(s) 123
MspA1I CMGCKG 1 cut(s) 78
MspR9I CCNGG 2 cut(s) 260, 574
MvaI CCWGG 2 cut(s) 260, 574
MwoI GCNNNNNNNGC 3 cut(s) 319, 419, 478
NlaIV GGNNCC 3 cut(s) 7, 62, 74
NmuCI GTSAC 2 cut(s) 115, 265
PceI AGGCCT 2 cut(s) 220, 336
PfeI GAWTC 2 cut(s) 371, 441
PkrI GCNGC 1 cut(s) 80
PleI GAGTC 1 cut(s) 122
PpsI GAGTC 1 cut(s) 122
Ppu21I YACGTR 1 cut(s) 19
Psp6I CCWGG 2 cut(s) 258, 572
PspFI CCCAGC 1 cut(s) 81
PspGI CCWGG 2 cut(s) 258, 572
PspN4I GGNNCC 3 cut(s) 7, 62, 74
PspPI GGNCC 1 cut(s) 73
RsaI GTAC 3 cut(s) 17, 386, 542
RsaNI GTAC 3 cut(s) 16, 385, 541
SatI GCNGC 1 cut(s) 79
Sau96I GGNCC 1 cut(s) 73
ScaI AGTACT 1 cut(s) 386
SchI GAGTC 1 cut(s) 123
ScrFI CCNGG 2 cut(s) 260, 574
SetI ASST 9 cut(s) 21, 62, 148, 299, 380, 396, 483, 559, 575
SinI GGWCC 1 cut(s) 73
SmlI CTYRAG 1 cut(s) 275
SmoI CTYRAG 1 cut(s) 275
SseBI AGGCCT 2 cut(s) 220, 336
SsiI CCGC 1 cut(s) 76
StuI AGGCCT 2 cut(s) 220, 336
StyD4I CCNGG 2 cut(s) 258, 572
StyI CCWWGG 1 cut(s) 228
TaaI ACNGT 2 cut(s) 188, 611
TaiI ACGT 2 cut(s) 21, 148
TaqI TCGA 2 cut(s) 104, 374
TatI WGTACW 1 cut(s) 384
TfiI GAWTC 2 cut(s) 371, 441
TseFI GTSAC 2 cut(s) 115, 265
TseI GCWGC 1 cut(s) 78
Tsp45I GTSAC 2 cut(s) 115, 265
TspGWI ACGGA 2 cut(s) 182, 590
VpaK11BI GGWCC 1 cut(s) 73
XcmI CCANNNNNNNNNTGG 1 cut(s) 444
ZrmI AGTACT 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.