Rh7DG215200

Belongs to the eukaryotic ribosomal protein eL15 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0005376
Physical Location & Seq
Reverse (-)
20736608 .. 20738721
2114 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG215200.1

Sequence Viewer

Length: 561 bp
ATGGGGTTCGTCCAGAGGGTTCGCTGCTGGGACTACCGTCAGCATCCTTCGATTGTACGAGTCACAAGGCCCACCCGCCCTGACAAGGCTCGCCGTCTCGGCTACAAGGCCAAGCAGGGATATGTTATCTACCGTGTCCGTGTGAGGCGTGGTGGTCGCAAGAGGCCAGTTGCCAAGGGTATTGTGTATGGTAAGCCCACCAACCAGGGAGTTACTCAACTAAAGTTCCAACGCAGCAAGAGGTCTGTTGCTGAGGAGCGTGCTGGGCGTAAGTTGGGTGGCCTTAGGGTTCTCAATTCCTACTGGATCAATGAGGATTCTACCTACAAGTACTTTGAGGTTATTCTCGTTGATGTTGCTCACACAGTCATCAAGAAAGACCCAAGAATCAACTGGATCGTCAATCCTGTTCACAAGCACAGAGAGCTTCGTGGTCTCACATCTGCTGGGAAGAAATACAGGGGACTGCGTGGAAAGGGCCACAATTACCACAAGAATCGTCCTTCTCGCAGGGCAACCTGGAAGAGAAACAACACCCTCTCCCTTCGTCGCTACCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L15e

Protein Analysis

186

Amino Acids

22.02

Weight (kDa)

11.59

Isoelectric Point (pI)

38.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L15e PF00827 1 - 172 3.5e-81 Ribosomal L15
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 76
AclWI GGATC 2 cut(s) 314, 404
AfaI GTAC 2 cut(s) 57, 332
AfiI CCNNNNNNNGG 1 cut(s) 85
AjnI CCWGG 2 cut(s) 204, 518
AluBI AGCT 1 cut(s) 427
AluI AGCT 1 cut(s) 427
Alw26I GTCTC 2 cut(s) 101, 440
AlwI GGATC 2 cut(s) 314, 404
AoxI GGCC 5 cut(s) 68, 108, 164, 280, 478
ApeKI GCWGC 2 cut(s) 24, 234
AspS9I GGNCC 2 cut(s) 69, 478
AxyI CCTNAGG 1 cut(s) 284
BbvCI CCTCAGC 1 cut(s) 252
BbvI GCAGC 2 cut(s) 11, 246
BceAI ACGGC 1 cut(s) 78
BciT130I CCWGG 2 cut(s) 206, 520
BcoDI GTCTC 2 cut(s) 101, 440
BglI GCCNNNNNGGC 1 cut(s) 99
BisI GCNGC 2 cut(s) 25, 235
BlsI GCNGC 2 cut(s) 26, 236
BmcAI AGTACT 1 cut(s) 332
Bme1390I CCNGG 2 cut(s) 206, 520
BmgT120I GGNCC 2 cut(s) 69, 478
BmrFI CCNGG 2 cut(s) 206, 520
BmsI GCATC 1 cut(s) 52
BoxI GACNNNNGTC 1 cut(s) 36
Bpu10I CCTNAGC 1 cut(s) 252
BsaI GGTCTC 1 cut(s) 440
BsaJI CCNNGG 2 cut(s) 174, 205
BsaXI ACNNNNNCTCC 2 cut(s) 524, 554
Bsc4I CCNNNNNNNGG 1 cut(s) 85
Bse1I ACTGG 3 cut(s) 167, 308, 398
Bse21I CCTNAGG 1 cut(s) 284
BseBI CCWGG 2 cut(s) 206, 520
BseDI CCNNGG 2 cut(s) 174, 205
BseGI GGATG 1 cut(s) 43
BseLI CCNNNNNNNGG 1 cut(s) 85
BseMII CTCAG 1 cut(s) 243
BseNI ACTGG 3 cut(s) 167, 308, 398
BseRI GAGGAG 1 cut(s) 269
BseXI GCAGC 2 cut(s) 11, 246
BseYI CCCAGC 3 cut(s) 27, 263, 446
BshFI GGCC 5 cut(s) 70, 110, 166, 282, 480
BslFI GGGAC 2 cut(s) 44, 477
BslI CCNNNNNNNGG 1 cut(s) 85
BsmAI GTCTC 2 cut(s) 101, 440
BsmBI CGTCTC 1 cut(s) 101
BsmFI GGGAC 2 cut(s) 44, 477
BsnI GGCC 5 cut(s) 70, 110, 166, 282, 480
Bso31I GGTCTC 1 cut(s) 440
Bsp143I GATC 2 cut(s) 306, 396
BspACI CCGC 1 cut(s) 76
BspANI GGCC 5 cut(s) 70, 110, 166, 282, 480
BspCNI CTCAG 1 cut(s) 244
BspPI GGATC 2 cut(s) 314, 404
BspTNI GGTCTC 1 cut(s) 440
BsrI ACTGG 3 cut(s) 167, 308, 398
BssECI CCNNGG 2 cut(s) 174, 205
BssMI GATC 2 cut(s) 306, 396
BssT1I CCWWGG 1 cut(s) 174
Bst2UI CCWGG 2 cut(s) 206, 520
Bst4CI ACNGT 4 cut(s) 38, 134, 367, 557
Bst6I CTCTTC 1 cut(s) 518
BstC8I GCNNGC 2 cut(s) 91, 261
BstDEI CTNAG 2 cut(s) 252, 284
BstF5I GGATG 1 cut(s) 43
BstKTI GATC 2 cut(s) 309, 399
BstMAI GTCTC 2 cut(s) 101, 440
BstMBI GATC 2 cut(s) 306, 396
BstMWI GCNNNNNNNGC 3 cut(s) 99, 265, 424
BstNI CCWGG 2 cut(s) 206, 520
BstPAI GACNNNNGTC 1 cut(s) 36
BstSCI CCNGG 2 cut(s) 204, 518
BstV1I GCAGC 2 cut(s) 11, 246
Bsu36I CCTNAGG 1 cut(s) 284
BsuRI GGCC 5 cut(s) 70, 110, 166, 282, 480
BtsCI GGATG 1 cut(s) 43
Cac8I GCNNGC 2 cut(s) 91, 261
Cfr13I GGNCC 2 cut(s) 69, 478
Csp6I GTAC 2 cut(s) 56, 331
CviJI RGCY 9 cut(s) 70, 89, 102, 110, 166, 196, 282, 427, 480
CviKI_1 RGCY 9 cut(s) 70, 89, 102, 110, 166, 196, 282, 427, 480
CviQI GTAC 2 cut(s) 56, 331
DdeI CTNAG 2 cut(s) 252, 284
DpnI GATC 2 cut(s) 308, 398
DpnII GATC 2 cut(s) 306, 396
Eam1104I CTCTTC 1 cut(s) 518
EarI CTCTTC 1 cut(s) 518
Eco130I CCWWGG 1 cut(s) 174
Eco31I GGTCTC 1 cut(s) 440
Eco81I CCTNAGG 1 cut(s) 284
EcoRII CCWGG 2 cut(s) 204, 518
EcoT14I CCWWGG 1 cut(s) 174
ErhI CCWWGG 1 cut(s) 174
Esp3I CGTCTC 1 cut(s) 101
FaiI YATR 2 cut(s) 123, 189
FaqI GGGAC 2 cut(s) 44, 477
FauI CCCGC 1 cut(s) 83
Fnu4HI GCNGC 2 cut(s) 25, 235
FokI GGATG 1 cut(s) 30
Fsp4HI GCNGC 2 cut(s) 25, 235
GluI GCNGC 2 cut(s) 25, 235
GsaI CCCAGC 3 cut(s) 31, 267, 450
HaeIII GGCC 5 cut(s) 70, 110, 166, 282, 480
HinfI GANTC 4 cut(s) 60, 317, 387, 496
Hpy166II GTNNAC 1 cut(s) 412
Hpy188III TCNNGA 2 cut(s) 13, 373
Hpy8I GTNNAC 1 cut(s) 412
Hpy99I CGWCG 1 cut(s) 552
HpyAV CCTTC 3 cut(s) 57, 513, 554
HpyCH4III ACNGT 4 cut(s) 38, 134, 367, 557
HpyF10VI GCNNNNNNNGC 3 cut(s) 99, 265, 424
HpyF3I CTNAG 2 cut(s) 252, 284
Kzo9I GATC 2 cut(s) 306, 396
LmnI GCTCC 1 cut(s) 256
Lsp1109I GCAGC 2 cut(s) 11, 246
LweI GCATC 1 cut(s) 52
MaeIII GTNAC 2 cut(s) 61, 211
MalI GATC 2 cut(s) 308, 398
MboI GATC 2 cut(s) 306, 396
MboII GAAGA 2 cut(s) 463, 535
MluCI AATT 2 cut(s) 295, 484
MlyI GAGTC 1 cut(s) 69
MmeI TCCRAC 1 cut(s) 253
MnlI CCTC 8 cut(s) 9, 138, 156, 234, 247, 307, 331, 548
MspR9I CCNGG 2 cut(s) 206, 520
MvaI CCWGG 2 cut(s) 206, 520
MwoI GCNNNNNNNGC 3 cut(s) 99, 265, 424
NdeII GATC 2 cut(s) 306, 396
NmeAIII GCCGAG 1 cut(s) 78
NmuCI GTSAC 1 cut(s) 61
PcsI WCGNNNNNNNCGW 1 cut(s) 553
PfeI GAWTC 3 cut(s) 317, 387, 496
PkrI GCNGC 2 cut(s) 26, 236
PleI GAGTC 1 cut(s) 68
PpsI GAGTC 1 cut(s) 68
PshAI GACNNNNGTC 1 cut(s) 36
Psp6I CCWGG 2 cut(s) 204, 518
PspFI CCCAGC 3 cut(s) 27, 263, 446
PspGI CCWGG 2 cut(s) 204, 518
PspPI GGNCC 2 cut(s) 69, 478
RsaI GTAC 2 cut(s) 57, 332
RsaNI GTAC 2 cut(s) 56, 331
SatI GCNGC 2 cut(s) 25, 235
Sau3AI GATC 2 cut(s) 306, 396
Sau96I GGNCC 2 cut(s) 69, 478
ScaI AGTACT 1 cut(s) 332
SchI GAGTC 1 cut(s) 69
ScrFI CCNGG 2 cut(s) 206, 520
SetI ASST 5 cut(s) 245, 326, 342, 429, 521
SfaNI GCATC 1 cut(s) 52
Sse9I AATT 2 cut(s) 295, 484
SsiI CCGC 1 cut(s) 76
StyD4I CCNGG 2 cut(s) 204, 518
StyI CCWWGG 1 cut(s) 174
TaaI ACNGT 4 cut(s) 38, 134, 367, 557
TaqI TCGA 1 cut(s) 50
TasI AATT 2 cut(s) 295, 484
TatI WGTACW 1 cut(s) 330
TfiI GAWTC 3 cut(s) 317, 387, 496
TseFI GTSAC 1 cut(s) 61
TseI GCWGC 2 cut(s) 24, 234
Tsp45I GTSAC 1 cut(s) 61
TspGWI ACGGA 1 cut(s) 128
XcmI CCANNNNNNNNNTGG 1 cut(s) 390
ZrmI AGTACT 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.