Rw1G034420

Belongs to the eukaryotic ribosomal protein eL15 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0005376
Physical Location & Seq
Reverse (-)
62329949 .. 62331657
1709 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G034420.1

Sequence Viewer

Length: 615 bp
ATGGGGGCTTACAAGTACGTATCGGAGATATGGAGGAAGAAGCAGTCGGACGTTATGAACTTCGTTTCCAGAATCCGAGTTTGGCAGTACCGCCAGGAACCCTCCATTGTGCGTGTCACTCGTCCCACTCGCCCTGAAAAGGCTCATCGCTTGGGATACAAGGCCAAGCAGGGTTATGTTATCTACCGGGTGCGTGTGAGGCGTGGTGGACGCAAGAGACCAGTTGCGAAGGGCATTGTGTATGGCAAGCCCACAAACCAGGGTGTTACTCAATTGAAGTTCCAACGCAGCAAGCGCTCAGTTGCAGAGGAGCGTGCAGGTCGCAAACTAGGTGGCCTTAAGGTTCTCAATTCTTACTGGGTTAATGAGGACTCTACATACAAATATTTTGAGGTGATCTTGGTTGATGCTGCCCATATGACCATCCAAAATGACCGAAGGATTAATTGGATCTGCAATCCTGTTCACAAGCACAGAGAGCTTCGTGGACTCACTTCTGCTGGAAAGAAATATAGGGGTCTGCAAGGAAAGGGTCACTTGCACCACAAGGCACGACCTTCAAGGAGGGCCAACTGGAAGAGGAACAACACCCTTTCTCTTCGGCGTTACCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L15e

Protein Analysis

204

Amino Acids

24.14

Weight (kDa)

11.34

Isoelectric Point (pI)

41.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L15e PF00827 2 - 191 2.7e-89 Ribosomal L15
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 308
AciI CCGC 1 cut(s) 91
AclWI GGATC 1 cut(s) 458
AfaI GTAC 2 cut(s) 17, 89
AfeI AGCGCT 1 cut(s) 296
AfiI CCNNNNNNNGG 1 cut(s) 139
AflII CTTAAG 1 cut(s) 338
AgsI TTSAA 2 cut(s) 277, 561
AjnI CCWGG 2 cut(s) 93, 258
AjuI GAANNNNNNNTTGG 4 cut(s) 64, 96, 430, 462
AloI GAACNNNNNNTCC 2 cut(s) 50, 82
AluBI AGCT 1 cut(s) 481
AluI AGCT 1 cut(s) 481
Alw26I GTCTC 1 cut(s) 211
AlwI GGATC 1 cut(s) 458
Aor51HI AGCGCT 1 cut(s) 296
AoxI GGCC 3 cut(s) 162, 334, 567
ApeKI GCWGC 2 cut(s) 288, 410
AseI ATTAAT 1 cut(s) 444
AspLEI GCGC 1 cut(s) 297
AspS9I GGNCC 1 cut(s) 567
AsuC2I CCSGG 1 cut(s) 188
AsuHPI GGTGA 1 cut(s) 406
BbvI GCAGC 2 cut(s) 300, 397
BccI CCATC 1 cut(s) 431
BciT130I CCWGG 2 cut(s) 95, 260
BciVI GTATCC 1 cut(s) 149
BcnI CCSGG 1 cut(s) 188
BcoDI GTCTC 1 cut(s) 211
BfaI CTAG 1 cut(s) 329
BfoI RGCGCY 1 cut(s) 298
BfrI CTTAAG 1 cut(s) 338
BfuAI ACCTGC 1 cut(s) 308
BfuI GTATCC 1 cut(s) 149
BisI GCNGC 2 cut(s) 289, 411
BlsI GCNGC 2 cut(s) 290, 412
Bme1390I CCNGG 3 cut(s) 95, 188, 260
BmgT120I GGNCC 1 cut(s) 567
BmiI GGNNCC 1 cut(s) 99
BmrFI CCNGG 3 cut(s) 95, 188, 260
BmrI ACTGGG 1 cut(s) 367
BmsI GCATC 1 cut(s) 397
BmuI ACTGGG 1 cut(s) 367
BpuMI CCSGG 1 cut(s) 188
BsaAI YACGTR 1 cut(s) 19
BsaI GGTCTC 1 cut(s) 211
BsaJI CCNNGG 1 cut(s) 259
Bsc4I CCNNNNNNNGG 1 cut(s) 139
Bse1I ACTGG 3 cut(s) 221, 362, 578
BseBI CCWGG 2 cut(s) 95, 260
BseDI CCNNGG 1 cut(s) 259
BseGI GGATG 1 cut(s) 423
BseLI CCNNNNNNNGG 1 cut(s) 139
BseMII CTCAG 1 cut(s) 312
BseNI ACTGG 3 cut(s) 221, 362, 578
BseRI GAGGAG 1 cut(s) 323
BseXI GCAGC 2 cut(s) 300, 397
BsgI GTGCAG 1 cut(s) 336
BshFI GGCC 3 cut(s) 164, 336, 569
BsiSI CCGG 1 cut(s) 187
BslFI GGGAC 1 cut(s) 108
BslI CCNNNNNNNGG 1 cut(s) 139
BsmAI GTCTC 1 cut(s) 211
BsmFI GGGAC 1 cut(s) 108
BsnI GGCC 3 cut(s) 164, 336, 569
Bso31I GGTCTC 1 cut(s) 211
Bsp143I GATC 2 cut(s) 396, 450
BspACI CCGC 1 cut(s) 91
BspANI GGCC 3 cut(s) 164, 336, 569
BspCNI CTCAG 1 cut(s) 311
BspLI GGNNCC 1 cut(s) 99
BspMI ACCTGC 1 cut(s) 308
BspPI GGATC 1 cut(s) 458
BspTI CTTAAG 1 cut(s) 338
BspTNI GGTCTC 1 cut(s) 211
BsrI ACTGG 3 cut(s) 221, 362, 578
BssECI CCNNGG 1 cut(s) 259
BssMI GATC 2 cut(s) 396, 450
Bst2UI CCWGG 2 cut(s) 95, 260
Bst4CI ACNGT 1 cut(s) 611
Bst6I CTCTTC 2 cut(s) 572, 603
BstAFI CTTAAG 1 cut(s) 338
BstBAI YACGTR 1 cut(s) 19
BstC8I GCNNGC 3 cut(s) 248, 293, 315
BstDEI CTNAG 1 cut(s) 298
BstF5I GGATG 1 cut(s) 423
BstH2I RGCGCY 1 cut(s) 298
BstHHI GCGC 1 cut(s) 297
BstKTI GATC 2 cut(s) 399, 453
BstMAI GTCTC 1 cut(s) 211
BstMBI GATC 2 cut(s) 396, 450
BstMWI GCNNNNNNNGC 3 cut(s) 199, 294, 478
BstNI CCWGG 2 cut(s) 95, 260
BstSCI CCNGG 3 cut(s) 93, 186, 258
BstSNI TACGTA 1 cut(s) 19
BstV1I GCAGC 2 cut(s) 300, 397
BstX2I RGATCY 1 cut(s) 450
BstYI RGATCY 1 cut(s) 450
BsuI GTATCC 1 cut(s) 149
BsuRI GGCC 3 cut(s) 164, 336, 569
BtgZI GCGATG 1 cut(s) 131
BtsCI GGATG 1 cut(s) 423
BveI ACCTGC 1 cut(s) 308
Cac8I GCNNGC 3 cut(s) 248, 293, 315
CfoI GCGC 1 cut(s) 297
Cfr13I GGNCC 1 cut(s) 567
CseI GACGC 1 cut(s) 219
Csp6I GTAC 2 cut(s) 16, 88
CspCI CAANNNNNGTGG 2 cut(s) 313, 348
CviJI RGCY 7 cut(s) 8, 143, 164, 250, 336, 481, 569
CviKI_1 RGCY 7 cut(s) 8, 143, 164, 250, 336, 481, 569
CviQI GTAC 2 cut(s) 16, 88
DdeI CTNAG 1 cut(s) 298
DpnI GATC 2 cut(s) 398, 452
DpnII GATC 2 cut(s) 396, 450
Eam1104I CTCTTC 2 cut(s) 572, 603
EarI CTCTTC 2 cut(s) 572, 603
Eco105I TACGTA 1 cut(s) 19
Eco31I GGTCTC 1 cut(s) 211
Eco47III AGCGCT 1 cut(s) 296
EcoRII CCWGG 2 cut(s) 93, 258
FaiI YATR 8 cut(s) 31, 56, 177, 243, 379, 417, 419, 513
FalI AAGNNNNNCTT 2 cut(s) 521, 553
FaqI GGGAC 1 cut(s) 108
FauNDI CATATG 1 cut(s) 417
Fnu4HI GCNGC 2 cut(s) 289, 411
FokI GGATG 1 cut(s) 410
Fsp4HI GCNGC 2 cut(s) 289, 411
FspBI CTAG 1 cut(s) 329
GlaI GCGC 1 cut(s) 296
GluI GCNGC 2 cut(s) 289, 411
HaeII RGCGCY 1 cut(s) 298
HaeIII GGCC 3 cut(s) 164, 336, 569
HapII CCGG 1 cut(s) 187
HgaI GACGC 1 cut(s) 219
HhaI GCGC 1 cut(s) 297
Hin6I GCGC 1 cut(s) 295
HinP1I GCGC 1 cut(s) 295
HinfI GANTC 3 cut(s) 72, 371, 489
HpaII CCGG 1 cut(s) 187
HphI GGTGA 1 cut(s) 406
Hpy166II GTNNAC 3 cut(s) 209, 466, 488
Hpy188I TCNGA 3 cut(s) 25, 49, 77
Hpy188III TCNNGA 1 cut(s) 69
Hpy8I GTNNAC 3 cut(s) 209, 466, 488
HpyAV CCTTC 3 cut(s) 223, 432, 567
HpyCH4III ACNGT 1 cut(s) 611
HpyCH4IV ACGT 2 cut(s) 18, 51
HpyCH4V TGCA 5 cut(s) 305, 317, 456, 523, 541
HpyF10VI GCNNNNNNNGC 3 cut(s) 199, 294, 478
HpyF3I CTNAG 1 cut(s) 298
HpySE526I ACGT 2 cut(s) 18, 51
HspAI GCGC 1 cut(s) 295
Kzo9I GATC 2 cut(s) 396, 450
LmnI GCTCC 1 cut(s) 310
Lsp1109I GCAGC 2 cut(s) 300, 397
LweI GCATC 1 cut(s) 397
MaeI CTAG 1 cut(s) 329
MaeII ACGT 2 cut(s) 18, 51
MaeIII GTNAC 4 cut(s) 115, 265, 533, 605
MalI GATC 2 cut(s) 398, 452
MboI GATC 2 cut(s) 396, 450
MboII GAAGA 3 cut(s) 49, 589, 590
MfeI CAATTG 1 cut(s) 272
MflI RGATCY 1 cut(s) 450
MluCI AATT 3 cut(s) 272, 349, 445
MlyI GAGTC 2 cut(s) 365, 483
MmeI TCCRAC 2 cut(s) 27, 307
MnlI CCTC 8 cut(s) 27, 112, 192, 301, 361, 385, 558, 573
MseI TTAA 3 cut(s) 339, 363, 444
MspCI CTTAAG 1 cut(s) 338
MspI CCGG 1 cut(s) 187
MspR9I CCNGG 3 cut(s) 95, 188, 260
MunI CAATTG 1 cut(s) 272
MvaI CCWGG 2 cut(s) 95, 260
MwoI GCNNNNNNNGC 3 cut(s) 199, 294, 478
NciI CCSGG 1 cut(s) 188
NdeI CATATG 1 cut(s) 417
NdeII GATC 2 cut(s) 396, 450
NlaIV GGNNCC 1 cut(s) 99
NmuCI GTSAC 2 cut(s) 115, 533
PcsI WCGNNNNNNNCGW 1 cut(s) 607
PfeI GAWTC 1 cut(s) 72
PkrI GCNGC 2 cut(s) 290, 412
PleI GAGTC 2 cut(s) 365, 483
PpsI GAGTC 2 cut(s) 365, 483
Ppu21I YACGTR 1 cut(s) 19
PshBI ATTAAT 1 cut(s) 444
Psp6I CCWGG 2 cut(s) 93, 258
PspGI CCWGG 2 cut(s) 93, 258
PspN4I GGNNCC 1 cut(s) 99
PspPI GGNCC 1 cut(s) 567
PsuI RGATCY 1 cut(s) 450
RsaI GTAC 2 cut(s) 17, 89
RsaNI GTAC 2 cut(s) 16, 88
SaqAI TTAA 3 cut(s) 339, 363, 444
SatI GCNGC 2 cut(s) 289, 411
Sau3AI GATC 2 cut(s) 396, 450
Sau96I GGNCC 1 cut(s) 567
SchI GAGTC 2 cut(s) 365, 483
ScrFI CCNGG 3 cut(s) 95, 188, 260
SetI ASST 8 cut(s) 21, 54, 322, 334, 345, 396, 483, 559
SfaNI GCATC 1 cut(s) 397
SmlI CTYRAG 1 cut(s) 338
SmoI CTYRAG 1 cut(s) 338
SnaBI TACGTA 1 cut(s) 19
Sse9I AATT 3 cut(s) 272, 349, 445
SsiI CCGC 1 cut(s) 91
SspI AATATT 1 cut(s) 386
SspMI CTAG 1 cut(s) 329
StyD4I CCNGG 3 cut(s) 93, 186, 258
TaaI ACNGT 1 cut(s) 611
TaiI ACGT 2 cut(s) 21, 54
TaqII GACCGA 1 cut(s) 450
TasI AATT 3 cut(s) 272, 349, 445
TfiI GAWTC 1 cut(s) 72
Tru1I TTAA 3 cut(s) 339, 363, 444
Tru9I TTAA 3 cut(s) 339, 363, 444
TseFI GTSAC 2 cut(s) 115, 533
TseI GCWGC 2 cut(s) 288, 410
Tsp45I GTSAC 2 cut(s) 115, 533
TspDTI ATGAA 1 cut(s) 71
Vha464I CTTAAG 1 cut(s) 338
VspI ATTAAT 1 cut(s) 444
XspI CTAG 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.