FvH4_5g19240

Belongs to the eukaryotic ribosomal protein eL15 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0005376
Physical Location & Seq
Reverse (-)
11101871 .. 11103880
2010 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g19240.t1

Sequence Viewer

Length: 615 bp
ATGGGAGCTTACAAGTACGTGTCTGAGCTATGGAGGAAGAAACAGTCCGATGTGATGGGGTTCGTCCAGAGGGTTCGCTGCTGGGACTACCGCCAGCATCCTTCCATCGTCCGAGTCACTCGCCCCACTCGCCCTGACAAGGCTCGCCGTCTCGGCTACAAGGCCAAGCAGGGATATGTTATTTACCGTGTCCGTGTGAGGCGTGGTGGTCGCAAGAGGCCAGTTGCCAAGGGTATTGTCTATGGTAAGCCAACAAACCAGGGAGTTACACAACTCAAGTTCCAGCGCAGCAAGAGGTCTGTTGCTGAGGAGCGTGCTGGACGCAAGTTGGGAGGCCTTAGGGTTCTCAATTCCTACTGGATCAATGAGGACTCCACCTACAAGTACTTTGAGGTTATTCTTGTGGATGTTGCCCACAGTGTCATCAAGAAAGACCCCAGGATTAACTGGATCGTCAACCCTGTGCACAAGCATAGAGAGCTTCGCGGTCTCACTTCTGCTGGAAAGAAATATAGGGGACTGCGTGGAAAGGGTCACCGTTACCACAAGAACCGTCCTTCTCGCAGGGCAACTTGGAAGCGCAACAACACCCTCTCCCTCCGTCGCTACCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L15e

Protein Analysis

205

Amino Acids

24.22

Weight (kDa)

11.44

Isoelectric Point (pI)

40.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L15e PF00827 2 - 190 2.6e-89 Ribosomal L15
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 486
AciI CCGC 2 cut(s) 91, 486
AclWI GGATC 2 cut(s) 368, 458
AfaI GTAC 2 cut(s) 17, 386
AfiI CCNNNNNNNGG 1 cut(s) 139
AflIII ACRYGT 1 cut(s) 18
AjnI CCWGG 2 cut(s) 258, 437
AluBI AGCT 3 cut(s) 8, 28, 481
AluI AGCT 3 cut(s) 8, 28, 481
Alw21I GWGCWC 1 cut(s) 468
Alw26I GTCTC 2 cut(s) 155, 494
Alw44I GTGCAC 1 cut(s) 464
AlwI GGATC 2 cut(s) 368, 458
AoxI GGCC 3 cut(s) 162, 218, 334
ApaLI GTGCAC 1 cut(s) 464
ApeKI GCWGC 2 cut(s) 78, 288
AspLEI GCGC 2 cut(s) 288, 582
AsuHPI GGTGA 1 cut(s) 527
AxyI CCTNAGG 1 cut(s) 338
BaeGI GKGCMC 1 cut(s) 468
Bbv12I GWGCWC 1 cut(s) 468
BbvCI CCTCAGC 1 cut(s) 306
BbvI GCAGC 2 cut(s) 65, 300
BccI CCATC 2 cut(s) 49, 113
BceAI ACGGC 1 cut(s) 132
BciT130I CCWGG 2 cut(s) 260, 439
BcoDI GTCTC 2 cut(s) 155, 494
BglI GCCNNNNNGGC 1 cut(s) 153
BisI GCNGC 2 cut(s) 79, 289
BlsI GCNGC 2 cut(s) 80, 290
BmcAI AGTACT 1 cut(s) 386
Bme1390I CCNGG 2 cut(s) 260, 439
BmrFI CCNGG 2 cut(s) 260, 439
BmsI GCATC 1 cut(s) 106
Bpu10I CCTNAGC 1 cut(s) 306
BpuEI CTTGAG 1 cut(s) 260
BsaAI YACGTR 1 cut(s) 19
BsaI GGTCTC 1 cut(s) 494
BsaJI CCNNGG 3 cut(s) 228, 259, 437
BsaXI ACNNNNNCTCC 2 cut(s) 578, 608
Bsc4I CCNNNNNNNGG 1 cut(s) 139
Bse1I ACTGG 3 cut(s) 221, 362, 452
Bse21I CCTNAGG 1 cut(s) 338
BseBI CCWGG 2 cut(s) 260, 439
BseDI CCNNGG 3 cut(s) 228, 259, 437
BseGI GGATG 2 cut(s) 97, 412
BseLI CCNNNNNNNGG 1 cut(s) 139
BseMII CTCAG 2 cut(s) 15, 297
BseNI ACTGG 3 cut(s) 221, 362, 452
BseRI GAGGAG 1 cut(s) 323
BseSI GKGCMC 1 cut(s) 468
BseXI GCAGC 2 cut(s) 65, 300
BseYI CCCAGC 1 cut(s) 81
Bsh1236I CGCG 1 cut(s) 486
BshFI GGCC 3 cut(s) 164, 220, 336
BsiHKAI GWGCWC 1 cut(s) 468
BslFI GGGAC 2 cut(s) 98, 531
BslI CCNNNNNNNGG 1 cut(s) 139
BsmAI GTCTC 2 cut(s) 155, 494
BsmBI CGTCTC 1 cut(s) 155
BsmFI GGGAC 2 cut(s) 98, 531
BsnI GGCC 3 cut(s) 164, 220, 336
Bso31I GGTCTC 1 cut(s) 494
Bsp1286I GDGCHC 1 cut(s) 468
Bsp143I GATC 2 cut(s) 360, 450
BspACI CCGC 2 cut(s) 91, 486
BspANI GGCC 3 cut(s) 164, 220, 336
BspCNI CTCAG 2 cut(s) 16, 298
BspFNI CGCG 1 cut(s) 486
BspPI GGATC 2 cut(s) 368, 458
BspTNI GGTCTC 1 cut(s) 494
BsrI ACTGG 3 cut(s) 221, 362, 452
BssECI CCNNGG 3 cut(s) 228, 259, 437
BssMI GATC 2 cut(s) 360, 450
BssT1I CCWWGG 1 cut(s) 228
Bst2UI CCWGG 2 cut(s) 260, 439
Bst4CI ACNGT 6 cut(s) 45, 188, 419, 539, 554, 611
BstBAI YACGTR 1 cut(s) 19
BstC8I GCNNGC 3 cut(s) 95, 145, 315
BstDEI CTNAG 3 cut(s) 24, 306, 338
BstEII GGTNACC 1 cut(s) 533
BstF5I GGATG 2 cut(s) 97, 412
BstFNI CGCG 1 cut(s) 486
BstHHI GCGC 2 cut(s) 288, 582
BstKTI GATC 2 cut(s) 363, 453
BstMAI GTCTC 2 cut(s) 155, 494
BstMBI GATC 2 cut(s) 360, 450
BstMWI GCNNNNNNNGC 3 cut(s) 129, 153, 478
BstNI CCWGG 2 cut(s) 260, 439
BstPI GGTNACC 1 cut(s) 533
BstSCI CCNGG 2 cut(s) 258, 437
BstSLI GKGCMC 1 cut(s) 468
BstUI CGCG 1 cut(s) 486
BstV1I GCAGC 2 cut(s) 65, 300
Bsu36I CCTNAGG 1 cut(s) 338
BsuRI GGCC 3 cut(s) 164, 220, 336
BtsCI GGATG 2 cut(s) 97, 412
BtsIMutI CAGTG 1 cut(s) 424
Cac8I GCNNGC 3 cut(s) 95, 145, 315
CfoI GCGC 2 cut(s) 288, 582
CseI GACGC 1 cut(s) 330
Csp6I GTAC 2 cut(s) 16, 385
CviJI RGCY 9 cut(s) 8, 28, 143, 156, 164, 220, 250, 336, 481
CviKI_1 RGCY 9 cut(s) 8, 28, 143, 156, 164, 220, 250, 336, 481
CviQI GTAC 2 cut(s) 16, 385
DdeI CTNAG 3 cut(s) 24, 306, 338
DpnI GATC 2 cut(s) 362, 452
DpnII GATC 2 cut(s) 360, 450
Eco130I CCWWGG 1 cut(s) 228
Eco147I AGGCCT 1 cut(s) 336
Eco31I GGTCTC 1 cut(s) 494
Eco81I CCTNAGG 1 cut(s) 338
Eco91I GGTNACC 1 cut(s) 533
EcoO65I GGTNACC 1 cut(s) 533
EcoRII CCWGG 2 cut(s) 258, 437
EcoT14I CCWWGG 1 cut(s) 228
ErhI CCWWGG 1 cut(s) 228
Esp3I CGTCTC 1 cut(s) 155
FaiI YATR 5 cut(s) 31, 177, 243, 474, 513
FaqI GGGAC 2 cut(s) 98, 531
Fnu4HI GCNGC 2 cut(s) 79, 289
FokI GGATG 2 cut(s) 84, 419
Fsp4HI GCNGC 2 cut(s) 79, 289
GlaI GCGC 2 cut(s) 287, 581
GluI GCNGC 2 cut(s) 79, 289
GsaI CCCAGC 1 cut(s) 85
HaeIII GGCC 3 cut(s) 164, 220, 336
HgaI GACGC 1 cut(s) 330
HhaI GCGC 2 cut(s) 288, 582
Hin6I GCGC 2 cut(s) 286, 580
HinP1I GCGC 2 cut(s) 286, 580
HincII GTYRAC 1 cut(s) 457
HindII GTYRAC 1 cut(s) 457
HinfI GANTC 2 cut(s) 114, 371
HphI GGTGA 1 cut(s) 527
Hpy166II GTNNAC 2 cut(s) 457, 466
Hpy188I TCNGA 3 cut(s) 25, 49, 113
Hpy188III TCNNGA 2 cut(s) 67, 427
Hpy8I GTNNAC 2 cut(s) 457, 466
Hpy99I CGWCG 1 cut(s) 606
HpyAV CCTTC 2 cut(s) 111, 567
HpyCH4III ACNGT 6 cut(s) 45, 188, 419, 539, 554, 611
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 1 cut(s) 466
HpyF10VI GCNNNNNNNGC 3 cut(s) 129, 153, 478
HpyF3I CTNAG 3 cut(s) 24, 306, 338
HpySE526I ACGT 1 cut(s) 18
HspAI GCGC 2 cut(s) 286, 580
Kzo9I GATC 2 cut(s) 360, 450
LmnI GCTCC 2 cut(s) 5, 310
Lsp1109I GCAGC 2 cut(s) 65, 300
LweI GCATC 1 cut(s) 106
MaeII ACGT 1 cut(s) 18
MaeIII GTNAC 4 cut(s) 115, 265, 533, 539
MalI GATC 2 cut(s) 362, 452
MboI GATC 2 cut(s) 360, 450
MboII GAAGA 1 cut(s) 49
MhlI GDGCHC 1 cut(s) 468
MluCI AATT 1 cut(s) 349
MlyI GAGTC 2 cut(s) 123, 365
MseI TTAA 2 cut(s) 444, 613
MspR9I CCNGG 2 cut(s) 260, 439
MvaI CCWGG 2 cut(s) 260, 439
MvnI CGCG 1 cut(s) 486
MwoI GCNNNNNNNGC 3 cut(s) 129, 153, 478
NdeII GATC 2 cut(s) 360, 450
NmeAIII GCCGAG 1 cut(s) 132
NmuCI GTSAC 2 cut(s) 115, 533
PceI AGGCCT 1 cut(s) 336
PkrI GCNGC 2 cut(s) 80, 290
PleI GAGTC 2 cut(s) 122, 365
PpsI GAGTC 2 cut(s) 122, 365
Ppu21I YACGTR 1 cut(s) 19
Psp6I CCWGG 2 cut(s) 258, 437
PspEI GGTNACC 1 cut(s) 533
PspFI CCCAGC 1 cut(s) 81
PspGI CCWGG 2 cut(s) 258, 437
RsaI GTAC 2 cut(s) 17, 386
RsaNI GTAC 2 cut(s) 16, 385
SaqAI TTAA 2 cut(s) 444, 613
SatI GCNGC 2 cut(s) 79, 289
Sau3AI GATC 2 cut(s) 360, 450
ScaI AGTACT 1 cut(s) 386
SchI GAGTC 2 cut(s) 123, 365
ScrFI CCNGG 2 cut(s) 260, 439
SduI GDGCHC 1 cut(s) 468
SetI ASST 7 cut(s) 10, 21, 30, 299, 380, 396, 483
SfaNI GCATC 1 cut(s) 106
SmlI CTYRAG 1 cut(s) 275
SmoI CTYRAG 1 cut(s) 275
Sse9I AATT 1 cut(s) 349
SseBI AGGCCT 1 cut(s) 336
SsiI CCGC 2 cut(s) 91, 486
StuI AGGCCT 1 cut(s) 336
StyD4I CCNGG 2 cut(s) 258, 437
StyI CCWWGG 1 cut(s) 228
TaaI ACNGT 6 cut(s) 45, 188, 419, 539, 554, 611
TaiI ACGT 1 cut(s) 21
TasI AATT 1 cut(s) 349
TatI WGTACW 1 cut(s) 384
Tru1I TTAA 2 cut(s) 444, 613
Tru9I TTAA 2 cut(s) 444, 613
TscAI CASTG 1 cut(s) 424
TseFI GTSAC 2 cut(s) 115, 533
TseI GCWGC 2 cut(s) 78, 288
Tsp45I GTSAC 2 cut(s) 115, 533
TspGWI ACGGA 2 cut(s) 182, 590
TspRI CASTG 1 cut(s) 424
VneI GTGCAC 1 cut(s) 464
ZrmI AGTACT 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.