Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005376

Physical Location & Seq

Genomic Coordinates Reverse (-)

9714092 .. 9715648

Gene Structure 1557 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G17390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGATGAGGTTTCTTCAGAGGGTTAGGTGTTGGGAGTATCGCCAGCAGCCTTCCATTGTTCGTCTTGTTCGTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAGGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCAGTGCCTAAGGGTATCGTGTACGGTAAACCCACCAACCAGGGAGTGACACAGCTCAAATTCCAGCGTAGTAAGAGATCTGTTGCTGAGGAACGTGCTGGTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAATGCCGTCCGAAATGATCCAAGGATCAACTGGATCTGCAACCCTGTGCACAAGCACAGAGAACTCAGAGGTCTCACCTCCGAAGGAAAGAAGAATCGTGGTCTTCGTGGAAAGGGTCACAACAACCACAAGAACAGACCTTCCCGCAGGGCAACCTGGAAGAAGAACAACAGTATCTCTCTCCGTCGTTACCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L15e

Protein Analysis

204

Amino Acids

24.24

Weight (kDa)

11.44

Isoelectric Point (pI)

51.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L15e	PF00827	2 - 190	1.2e-91	Ribosomal L15

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16720 AT4G17390
fragaria_vesca	FvH4_5g19240
malus_domestica	MD04G1062000.v1.1 MD06G1055700.v1.1 MD14G1017500.v1.1
prunus_persica	Prupe.2G275400_v2.0.a1 Prupe.5G066200_v2.0.a1 Prupe.7G040900_v2.0.a1
pyrus_communis	pycom04g05560 pycom14g01540
rosa_chinensis	RchiOBHm_Chr1g0374091 RchiOBHm_Chr7g0203741
rosa_laevigata	RLG00000003508 RLG00000026764
rosa_multiflora	Rmu_sc0000876.1_g000037 Rmu_sc0001714.1_g000007 Rmu_sc0006924.1_g000011
rosa_roxburghii	Rroxscaffold_3G00253580 Rroxscaffold_4G00283750
rosa_rugosa	Rorug01G0380700
rosa_samantha	Rh1AG391400 Rh1BG355400 Rh1CG368400 Rh1DG386100 Rh7BG207300 Rh7DG215200
rosa_wichuraiana	Rw1G034420 Rw7G018140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	183, 405
AciI	CCGC	1 cut(s)	562
AclWI	GGATC	3 cut(s)	428, 449, 458
AcsI	RAATTY	1 cut(s)	278
AcuI	CTGAAG	1 cut(s)	50
AfaI	GTAC	3 cut(s)	11, 242, 386
AfiI	CCNNNNNNNGG	1 cut(s)	171
AflIII	ACRYGT	1 cut(s)	18
AgeI	ACCGGT	1 cut(s)	609
AjiI	CACGTC	1 cut(s)	203
AjnI	CCWGG	2 cut(s)	258, 572
AloI	GAACNNNNNNTCC	2 cut(s)	542, 574
AluBI	AGCT	2 cut(s)	28, 274
AluI	AGCT	2 cut(s)	28, 274
Alw21I	GWGCWC	1 cut(s)	468
Alw26I	GTCTC	2 cut(s)	155, 494
Alw44I	GTGCAC	1 cut(s)	464
AlwI	GGATC	3 cut(s)	428, 449, 458
AoxI	GGCC	3 cut(s)	162, 218, 334
ApaLI	GTGCAC	1 cut(s)	464
ApeKI	GCWGC	1 cut(s)	97
ApoI	RAATTY	1 cut(s)	278
AsiGI	ACCGGT	1 cut(s)	609
AsuHPI	GGTGA	1 cut(s)	484
AxyI	CCTNAGG	2 cut(s)	228, 338
BaeGI	GKGCMC	1 cut(s)	468
BaeI	ACNNNNGTAYC	2 cut(s)	574, 607
BbsI	GAAGAC	1 cut(s)	512
Bbv12I	GWGCWC	1 cut(s)	468
BbvCI	CCTCAGC	1 cut(s)	306
BbvI	GCAGC	1 cut(s)	109
BceAI	ACGGC	1 cut(s)	407
BciT130I	CCWGG	2 cut(s)	260, 574
BcoDI	GTCTC	2 cut(s)	155, 494
BglII	AGATCT	1 cut(s)	296
BisI	GCNGC	1 cut(s)	98
BlsI	GCNGC	1 cut(s)	99
BmcAI	AGTACT	1 cut(s)	386
Bme1390I	CCNGG	2 cut(s)	260, 574
BmgBI	CACGTC	1 cut(s)	203
BmrFI	CCNGG	2 cut(s)	260, 574
BmrI	ACTGGG	1 cut(s)	338
BmuI	ACTGGG	1 cut(s)	338
BpiI	GAAGAC	1 cut(s)	512
Bpu10I	CCTNAGC	1 cut(s)	306
BsaAI	YACGTR	1 cut(s)	19
BsaI	GGTCTC	1 cut(s)	494
BsaJI	CCNNGG	2 cut(s)	259, 437
BsaWI	WCCGGW	1 cut(s)	609
Bsc4I	CCNNNNNNNGG	1 cut(s)	171
Bse118I	RCCGGY	1 cut(s)	609
Bse1I	ACTGG	4 cut(s)	221, 333, 362, 452
Bse21I	CCTNAGG	2 cut(s)	228, 338
BseBI	CCWGG	2 cut(s)	260, 574
BseDI	CCNNGG	2 cut(s)	259, 437
BseGI	GGATG	1 cut(s)	55
BseLI	CCNNNNNNNGG	1 cut(s)	171
BseMII	CTCAG	2 cut(s)	297, 496
BseNI	ACTGG	4 cut(s)	221, 333, 362, 452
BseSI	GKGCMC	1 cut(s)	468
BseXI	GCAGC	1 cut(s)	109
BsgI	GTGCAG	1 cut(s)	396
BshFI	GGCC	3 cut(s)	164, 220, 336
BshTI	ACCGGT	1 cut(s)	609
BsiHKAI	GWGCWC	1 cut(s)	468
BsiSI	CCGG	1 cut(s)	610
BslFI	GGGAC	2 cut(s)	108, 117
BslI	CCNNNNNNNGG	1 cut(s)	171
BsmAI	GTCTC	2 cut(s)	155, 494
BsmBI	CGTCTC	1 cut(s)	155
BsmFI	GGGAC	2 cut(s)	108, 117
BsnI	GGCC	3 cut(s)	164, 220, 336
Bso31I	GGTCTC	1 cut(s)	494
Bsp1286I	GDGCHC	1 cut(s)	468
Bsp143I	GATC	4 cut(s)	296, 433, 441, 450
BspACI	CCGC	1 cut(s)	562
BspANI	GGCC	3 cut(s)	164, 220, 336
BspCNI	CTCAG	2 cut(s)	298, 495
BspPI	GGATC	3 cut(s)	428, 449, 458
BspTNI	GGTCTC	1 cut(s)	494
BsrFI	RCCGGY	1 cut(s)	609
BsrI	ACTGG	4 cut(s)	221, 333, 362, 452
BssAI	RCCGGY	1 cut(s)	609
BssECI	CCNNGG	2 cut(s)	259, 437
BssMI	GATC	4 cut(s)	296, 433, 441, 450
BssT1I	CCWWGG	1 cut(s)	437
Bst2UI	CCWGG	2 cut(s)	260, 574
Bst4CI	ACNGT	3 cut(s)	188, 245, 590
BstAPI	GCANNNNNTGC	1 cut(s)	419
BstBAI	YACGTR	1 cut(s)	19
BstC8I	GCNNGC	1 cut(s)	95
BstDEI	CTNAG	4 cut(s)	228, 306, 338, 482
BstF5I	GGATG	1 cut(s)	55
BstKTI	GATC	4 cut(s)	299, 436, 444, 453
BstMAI	GTCTC	2 cut(s)	155, 494
BstMBI	GATC	4 cut(s)	296, 433, 441, 450
BstMWI	GCNNNNNNNGC	1 cut(s)	419
BstNI	CCWGG	2 cut(s)	260, 574
BstSCI	CCNGG	2 cut(s)	258, 572
BstSLI	GKGCMC	1 cut(s)	468
BstV1I	GCAGC	1 cut(s)	109
BstV2I	GAAGAC	1 cut(s)	512
BstX2I	RGATCY	2 cut(s)	296, 450
BstYI	RGATCY	2 cut(s)	296, 450
Bsu36I	CCTNAGG	2 cut(s)	228, 338
BsuRI	GGCC	3 cut(s)	164, 220, 336
BtrI	CACGTC	1 cut(s)	203
BtsCI	GGATG	1 cut(s)	55
BtsIMutI	CAGTG	1 cut(s)	228
Cac8I	GCNNGC	1 cut(s)	95
Cfr10I	RCCGGY	1 cut(s)	609
CseI	GACGC	1 cut(s)	219
Csp6I	GTAC	3 cut(s)	10, 241, 385
CspAI	ACCGGT	1 cut(s)	609
CviJI	RGCY	9 cut(s)	28, 100, 143, 156, 164, 220, 274, 336, 361
CviKI_1	RGCY	9 cut(s)	28, 100, 143, 156, 164, 220, 274, 336, 361
CviQI	GTAC	3 cut(s)	10, 241, 385
DdeI	CTNAG	4 cut(s)	228, 306, 338, 482
DpnI	GATC	4 cut(s)	298, 435, 443, 452
DpnII	GATC	4 cut(s)	296, 433, 441, 450
Eco130I	CCWWGG	1 cut(s)	437
Eco147I	AGGCCT	1 cut(s)	336
Eco31I	GGTCTC	1 cut(s)	494
Eco57I	CTGAAG	1 cut(s)	50
Eco81I	CCTNAGG	2 cut(s)	228, 338
EcoRII	CCWGG	2 cut(s)	258, 572
EcoT14I	CCWWGG	1 cut(s)	437
ErhI	CCWWGG	1 cut(s)	437
Esp3I	CGTCTC	1 cut(s)	155
FaiI	YATR	1 cut(s)	31
FaqI	GGGAC	2 cut(s)	108, 117
FauI	CCCGC	1 cut(s)	569
FblI	GTMKAC	2 cut(s)	183, 405
Fnu4HI	GCNGC	1 cut(s)	98
FokI	GGATG	1 cut(s)	62
Fsp4HI	GCNGC	1 cut(s)	98
GluI	GCNGC	1 cut(s)	98
HaeIII	GGCC	3 cut(s)	164, 220, 336
HapII	CCGG	1 cut(s)	610
HgaI	GACGC	1 cut(s)	219
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HinfI	GANTC	3 cut(s)	195, 371, 511
HpaI	GTTAAC	1 cut(s)	349
HpaII	CCGG	1 cut(s)	610
HphI	GGTGA	1 cut(s)	484
Hpy166II	GTNNAC	7 cut(s)	184, 209, 241, 248, 349, 406, 466
Hpy188I	TCNGA	7 cut(s)	25, 49, 69, 200, 428, 485, 499
Hpy188III	TCNNGA	1 cut(s)	134
Hpy8I	GTNNAC	7 cut(s)	184, 209, 241, 248, 349, 406, 466
Hpy99I	CGWCG	2 cut(s)	150, 606
HpyAV	CCTTC	3 cut(s)	111, 494, 567
HpyCH4III	ACNGT	3 cut(s)	188, 245, 590
HpyCH4IV	ACGT	3 cut(s)	18, 202, 313
HpyCH4V	TGCA	3 cut(s)	413, 456, 466
HpyF10VI	GCNNNNNNNGC	1 cut(s)	419
HpyF3I	CTNAG	4 cut(s)	228, 306, 338, 482
HpySE526I	ACGT	3 cut(s)	18, 202, 313
KspAI	GTTAAC	1 cut(s)	349
Kzo9I	GATC	4 cut(s)	296, 433, 441, 450
LmnI	GCTCC	1 cut(s)	25
Lsp1109I	GCAGC	1 cut(s)	109
MaeII	ACGT	3 cut(s)	18, 202, 313
MaeIII	GTNAC	3 cut(s)	265, 533, 605
MalI	GATC	4 cut(s)	298, 435, 443, 452
MboI	GATC	4 cut(s)	296, 433, 441, 450
MboII	GAAGA	6 cut(s)	49, 56, 512, 520, 589, 592
MflI	RGATCY	2 cut(s)	296, 450
MhlI	GDGCHC	1 cut(s)	468
MluCI	AATT	1 cut(s)	278
MlyI	GAGTC	2 cut(s)	204, 365
MmeI	TCCRAC	1 cut(s)	27
MnlI	CCTC	9 cut(s)	27, 51, 63, 210, 301, 326, 361, 479, 505
MseI	TTAA	1 cut(s)	348
MspI	CCGG	1 cut(s)	610
MspR9I	CCNGG	2 cut(s)	260, 574
MvaI	CCWGG	2 cut(s)	260, 574
MwoI	GCNNNNNNNGC	1 cut(s)	419
NdeII	GATC	4 cut(s)	296, 433, 441, 450
NmeAIII	GCCGAG	1 cut(s)	132
NmuCI	GTSAC	2 cut(s)	265, 533
PceI	AGGCCT	1 cut(s)	336
PcsI	WCGNNNNNNNCGW	4 cut(s)	118, 127, 199, 520
PfeI	GAWTC	1 cut(s)	511
PinAI	ACCGGT	1 cut(s)	609
PkrI	GCNGC	1 cut(s)	99
PleI	GAGTC	2 cut(s)	203, 365
PpsI	GAGTC	2 cut(s)	203, 365
Ppu21I	YACGTR	1 cut(s)	19
Psp6I	CCWGG	2 cut(s)	258, 572
PspGI	CCWGG	2 cut(s)	258, 572
PsuI	RGATCY	2 cut(s)	296, 450
RsaI	GTAC	3 cut(s)	11, 242, 386
RsaNI	GTAC	3 cut(s)	10, 241, 385
SaqAI	TTAA	1 cut(s)	348
SatI	GCNGC	1 cut(s)	98
Sau3AI	GATC	4 cut(s)	296, 433, 441, 450
ScaI	AGTACT	1 cut(s)	386
SchI	GAGTC	2 cut(s)	204, 365
ScrFI	CCNGG	2 cut(s)	260, 574
SduI	GDGCHC	1 cut(s)	468
Sse9I	AATT	1 cut(s)	278
SseBI	AGGCCT	1 cut(s)	336
SsiI	CCGC	1 cut(s)	562
StuI	AGGCCT	1 cut(s)	336
StyD4I	CCNGG	2 cut(s)	258, 572
StyI	CCWWGG	1 cut(s)	437
TaaI	ACNGT	3 cut(s)	188, 245, 590
TaiI	ACGT	3 cut(s)	21, 205, 316
TaqI	TCGA	1 cut(s)	193
TasI	AATT	1 cut(s)	278
TatI	WGTACW	1 cut(s)	384
TfiI	GAWTC	1 cut(s)	511
Tru1I	TTAA	1 cut(s)	348
Tru9I	TTAA	1 cut(s)	348
TscAI	CASTG	1 cut(s)	228
TseFI	GTSAC	2 cut(s)	265, 533
TseI	GCWGC	1 cut(s)	97
Tsp45I	GTSAC	2 cut(s)	265, 533
TspGWI	ACGGA	1 cut(s)	590
TspRI	CASTG	1 cut(s)	228
VneI	GTGCAC	1 cut(s)	464
XapI	RAATTY	1 cut(s)	278
XcmI	CCANNNNNNNNNTGG	1 cut(s)	444
XmiI	GTMKAC	2 cut(s)	183, 405
ZrmI	AGTACT	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.