MD14G1017500.v1.1

Belongs to the eukaryotic ribosomal protein eL15 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0005376
Physical Location & Seq
Reverse (-)
1623023 .. 1625535
2513 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1017500.v1.1.491

Sequence Viewer

Length: 615 bp
ATGGGGTTTTACAAGTACCAGTCGGAGATATGGAGGAAGAAGCAATCCGACTTGATGAGGTTCGTGCAGAGGGTGCGCTGTTGGGAGTATCGCCAGCATCCTTCAATTGTCCGAGTCACAAGGCCTACACGCCCTGACAAGGCCCGTCGCTTGGGGTACAAGGCAAAGCAGGGTTATGTTGTTTATCGAGTCCGTGTGAGGCGTGGTGGTCGCAAGAGGCCTGTTTCCAAGGGTATTGTATATGGGAAGCCCACAAACCAAGGTGTGACTCAACTGAAGTTTCAGCGCAGCAAGAGGTCTGTTGCCGAGGAGCGTGCTGGCCGTAGACTAGGCGGTCTTAGGGTTCTCAACTCTTACTGGATTAATGAGGATTCGACTTACAAGTACTTTGAGGTAATCCTGGTTGATGTTGCTCATAATGCCATCCGAAATGACGCAAGAATCAACTGGCTCTGCAATCCCGTTCACAAGCACAGGGAGCTTCGCGGGCTCACTTCTGCCGGGAAGAAATACAGGGGATTGCGTGGAAAGGGACACCTTTACCACAAGGCACGACCTTCTCGCAGGGCAACTTGGAAGAGGAACACCGCCCTCTCCCTCCGTCGCTACCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L15e

Protein Analysis

205

Amino Acids

24.34

Weight (kDa)

11.47

Isoelectric Point (pI)

50.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L15e PF00827 2 - 190 1.2e-89 Ribosomal L15
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 333
AccI GTMKAC 1 cut(s) 325
AccII CGCG 1 cut(s) 486
AciI CCGC 3 cut(s) 333, 486, 588
AcoI YGGCCR 1 cut(s) 319
AcuI CTGAAG 1 cut(s) 296
AfaI GTAC 3 cut(s) 17, 158, 386
AfiI CCNNNNNNNGG 2 cut(s) 139, 151
AgsI TTSAA 1 cut(s) 105
AjnI CCWGG 1 cut(s) 399
AluBI AGCT 1 cut(s) 481
AluI AGCT 1 cut(s) 481
AoxI GGCC 4 cut(s) 122, 141, 218, 319
ApeKI GCWGC 1 cut(s) 288
AseI ATTAAT 1 cut(s) 363
AspLEI GCGC 2 cut(s) 78, 288
AspS9I GGNCC 1 cut(s) 142
AsuC2I CCSGG 1 cut(s) 502
BanII GRGCYC 1 cut(s) 492
BbvI GCAGC 1 cut(s) 300
BccI CCATC 1 cut(s) 431
BceAI ACGGC 1 cut(s) 306
BcgI CGANNNNNNTGC 2 cut(s) 296, 330
BciT130I CCWGG 1 cut(s) 401
BcnI CCSGG 1 cut(s) 502
BfaI CTAG 1 cut(s) 329
BisI GCNGC 1 cut(s) 289
BlsI GCNGC 1 cut(s) 290
BmcAI AGTACT 1 cut(s) 386
Bme1390I CCNGG 2 cut(s) 401, 502
BmgT120I GGNCC 1 cut(s) 142
BmrFI CCNGG 2 cut(s) 401, 502
BmsI GCATC 1 cut(s) 106
BpuMI CCSGG 1 cut(s) 502
BsaJI CCNNGG 3 cut(s) 228, 259, 306
Bsc4I CCNNNNNNNGG 2 cut(s) 139, 151
Bse1I ACTGG 3 cut(s) 19, 362, 452
BseBI CCWGG 1 cut(s) 401
BseDI CCNNGG 3 cut(s) 228, 259, 306
BseGI GGATG 2 cut(s) 97, 423
BseLI CCNNNNNNNGG 2 cut(s) 139, 151
BseNI ACTGG 3 cut(s) 19, 362, 452
BseRI GAGGAG 1 cut(s) 323
BseXI GCAGC 1 cut(s) 300
BsgI GTGCAG 1 cut(s) 86
Bsh1236I CGCG 1 cut(s) 486
BshFI GGCC 4 cut(s) 124, 143, 220, 321
BsiSI CCGG 1 cut(s) 501
BslFI GGGAC 1 cut(s) 546
BslI CCNNNNNNNGG 2 cut(s) 139, 151
BsmFI GGGAC 1 cut(s) 546
BsnI GGCC 4 cut(s) 124, 143, 220, 321
Bsp1286I GDGCHC 1 cut(s) 492
BspACI CCGC 3 cut(s) 333, 486, 588
BspANI GGCC 4 cut(s) 124, 143, 220, 321
BspFNI CGCG 1 cut(s) 486
BsrI ACTGG 3 cut(s) 19, 362, 452
BssECI CCNNGG 3 cut(s) 228, 259, 306
BssT1I CCWWGG 2 cut(s) 228, 259
Bst2UI CCWGG 1 cut(s) 401
Bst4CI ACNGT 1 cut(s) 611
Bst6I CTCTTC 1 cut(s) 572
BstAPI GCANNNNNTGC 1 cut(s) 73
BstC8I GCNNGC 4 cut(s) 95, 315, 319, 488
BstDEI CTNAG 1 cut(s) 338
BstF5I GGATG 2 cut(s) 97, 423
BstFNI CGCG 1 cut(s) 486
BstHHI GCGC 2 cut(s) 78, 288
BstMWI GCNNNNNNNGC 4 cut(s) 73, 419, 478, 487
BstNI CCWGG 1 cut(s) 401
BstSCI CCNGG 2 cut(s) 399, 500
BstUI CGCG 1 cut(s) 486
BstV1I GCAGC 1 cut(s) 300
BsuRI GGCC 4 cut(s) 124, 143, 220, 321
BtsCI GGATG 2 cut(s) 97, 423
Cac8I GCNNGC 4 cut(s) 95, 315, 319, 488
CfoI GCGC 2 cut(s) 78, 288
Cfr13I GGNCC 1 cut(s) 142
CseI GACGC 1 cut(s) 443
Csp6I GTAC 3 cut(s) 16, 157, 385
CviJI RGCY 8 cut(s) 124, 143, 220, 250, 321, 451, 481, 490
CviKI_1 RGCY 8 cut(s) 124, 143, 220, 250, 321, 451, 481, 490
CviQI GTAC 3 cut(s) 16, 157, 385
DdeI CTNAG 1 cut(s) 338
DrdI GACNNNNNNGTC 1 cut(s) 333
DseDI GACNNNNNNGTC 1 cut(s) 333
EaeI YGGCCR 1 cut(s) 319
Eam1104I CTCTTC 1 cut(s) 572
EarI CTCTTC 1 cut(s) 572
Eco130I CCWWGG 2 cut(s) 228, 259
Eco147I AGGCCT 2 cut(s) 124, 220
Eco24I GRGCYC 1 cut(s) 492
Eco57I CTGAAG 1 cut(s) 296
EcoRII CCWGG 1 cut(s) 399
EcoT14I CCWWGG 2 cut(s) 228, 259
EcoT38I GRGCYC 1 cut(s) 492
ErhI CCWWGG 2 cut(s) 228, 259
FaiI YATR 5 cut(s) 31, 177, 241, 243, 417
FaqI GGGAC 1 cut(s) 546
FauI CCCGC 1 cut(s) 479
FblI GTMKAC 1 cut(s) 325
Fnu4HI GCNGC 1 cut(s) 289
FokI GGATG 2 cut(s) 84, 410
FriOI GRGCYC 1 cut(s) 492
Fsp4HI GCNGC 1 cut(s) 289
FspBI CTAG 1 cut(s) 329
GlaI GCGC 2 cut(s) 77, 287
GluI GCNGC 1 cut(s) 289
HaeIII GGCC 4 cut(s) 124, 143, 220, 321
HapII CCGG 1 cut(s) 501
HgaI GACGC 1 cut(s) 443
HhaI GCGC 2 cut(s) 78, 288
Hin6I GCGC 2 cut(s) 76, 286
HinP1I GCGC 2 cut(s) 76, 286
HinfI GANTC 5 cut(s) 114, 189, 268, 371, 441
HpaII CCGG 1 cut(s) 501
Hpy166II GTNNAC 2 cut(s) 326, 466
Hpy188I TCNGA 4 cut(s) 25, 49, 113, 428
Hpy8I GTNNAC 2 cut(s) 326, 466
Hpy99I CGWCG 2 cut(s) 150, 606
HpyAV CCTTC 2 cut(s) 111, 567
HpyCH4III ACNGT 1 cut(s) 611
HpyCH4V TGCA 2 cut(s) 67, 456
HpyF10VI GCNNNNNNNGC 4 cut(s) 73, 419, 478, 487
HpyF3I CTNAG 1 cut(s) 338
HspAI GCGC 2 cut(s) 76, 286
LmnI GCTCC 2 cut(s) 310, 478
Lsp1109I GCAGC 1 cut(s) 300
LweI GCATC 1 cut(s) 106
MaeI CTAG 1 cut(s) 329
MaeIII GTNAC 2 cut(s) 115, 265
MboII GAAGA 3 cut(s) 49, 517, 589
MfeI CAATTG 1 cut(s) 105
MhlI GDGCHC 1 cut(s) 492
MluCI AATT 1 cut(s) 105
MlyI GAGTC 3 cut(s) 123, 198, 262
MmeI TCCRAC 1 cut(s) 72
MseI TTAA 1 cut(s) 363
MspI CCGG 1 cut(s) 501
MspR9I CCNGG 2 cut(s) 401, 502
MunI CAATTG 1 cut(s) 105
MvaI CCWGG 1 cut(s) 401
MvnI CGCG 1 cut(s) 486
MwoI GCNNNNNNNGC 4 cut(s) 73, 419, 478, 487
NciI CCSGG 1 cut(s) 502
NmeAIII GCCGAG 1 cut(s) 331
NmuCI GTSAC 2 cut(s) 115, 265
PceI AGGCCT 2 cut(s) 124, 220
PfeI GAWTC 2 cut(s) 371, 441
PkrI GCNGC 1 cut(s) 290
PleI GAGTC 3 cut(s) 122, 197, 262
PpsI GAGTC 3 cut(s) 122, 197, 262
PshBI ATTAAT 1 cut(s) 363
Psp6I CCWGG 1 cut(s) 399
PspGI CCWGG 1 cut(s) 399
PspPI GGNCC 1 cut(s) 142
RsaI GTAC 3 cut(s) 17, 158, 386
RsaNI GTAC 3 cut(s) 16, 157, 385
SaqAI TTAA 1 cut(s) 363
SatI GCNGC 1 cut(s) 289
Sau96I GGNCC 1 cut(s) 142
ScaI AGTACT 1 cut(s) 386
SchI GAGTC 3 cut(s) 123, 198, 262
ScrFI CCNGG 2 cut(s) 401, 502
SduI GDGCHC 1 cut(s) 492
SetI ASST 7 cut(s) 62, 265, 299, 396, 483, 540, 559
SfaNI GCATC 1 cut(s) 106
Sse9I AATT 1 cut(s) 105
SseBI AGGCCT 2 cut(s) 124, 220
SsiI CCGC 3 cut(s) 333, 486, 588
SspMI CTAG 1 cut(s) 329
StuI AGGCCT 2 cut(s) 124, 220
StyD4I CCNGG 2 cut(s) 399, 500
StyI CCWWGG 2 cut(s) 228, 259
TaaI ACNGT 1 cut(s) 611
TaqI TCGA 2 cut(s) 187, 374
TasI AATT 1 cut(s) 105
TatI WGTACW 1 cut(s) 384
TfiI GAWTC 2 cut(s) 371, 441
Tru1I TTAA 1 cut(s) 363
Tru9I TTAA 1 cut(s) 363
TseFI GTSAC 2 cut(s) 115, 265
TseI GCWGC 1 cut(s) 288
Tsp45I GTSAC 2 cut(s) 115, 265
TspGWI ACGGA 2 cut(s) 182, 590
VspI ATTAAT 1 cut(s) 363
XmiI GTMKAC 1 cut(s) 325
XspI CTAG 1 cut(s) 329
ZrmI AGTACT 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.