Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000876.1

Orthogroup ID

OG0005376

Physical Location & Seq

Genomic Coordinates Forward (+)

117539 .. 119174

Gene Structure 1636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000876.1_g000037.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

atgggagcttacaagtatgtgtcggagctatggcggaagaagcaatctgatgtgatggggttcgtccagagggttcgctgctgggactaccgtcagcatccttcgattgtccgagtcacaaggcctacccgccctgacaaggctcgccgtctcggctacaaggccaagcagggatatgttatctaccgtgtccgtgtgaggcgtggtggtcgcaagaggccagttgccaagggtatcgtgtatggtaagcccaccaaccagggagttactcaactaaagttccaacgcagcaagaggtctgtcgctgaggagcgtgctgggcgtaagttgggtggccttagggttctcaattcctactggatcaatgaggattctacctacaagtacttcgaggttattctcgttgatgttgctcacacagttatcaagaaagacccaagaatcaactggatcgtcaatcctgttcacaagcacagagagcttcgtggtctcacatctgctgggaagaaatacaggggactgcgtggaaagggccacaattaccacaagaatcgtccttctcgcagggcaacctggaagagaaacaacaccctctcccttcgtcgctaccgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L15e

Protein Analysis

204

Amino Acids

24.19

Weight (kDa)

11.39

Isoelectric Point (pI)

41.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16720 AT4G17390
fragaria_vesca	FvH4_5g19240
malus_domestica	MD04G1062000.v1.1 MD06G1055700.v1.1 MD14G1017500.v1.1
prunus_persica	Prupe.2G275400_v2.0.a1 Prupe.5G066200_v2.0.a1 Prupe.7G040900_v2.0.a1
pyrus_communis	pycom04g05560 pycom14g01540
rosa_chinensis	RchiOBHm_Chr1g0374091 RchiOBHm_Chr7g0203741
rosa_laevigata	RLG00000003508 RLG00000026764
rosa_multiflora	Rmu_sc0000876.1_g000037 Rmu_sc0001714.1_g000007 Rmu_sc0006924.1_g000011
rosa_roxburghii	Rroxscaffold_3G00253580 Rroxscaffold_4G00283750
rosa_rugosa	Rorug01G0380700
rosa_samantha	Rh1AG391400 Rh1BG355400 Rh1CG368400 Rh1DG386100 Rh7BG207300 Rh7DG215200
rosa_wichuraiana	Rw1G034420 Rw7G018140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	34, 130
AclWI	GGATC	2 cut(s)	368, 458
AfaI	GTAC	1 cut(s)	386
AfiI	CCNNNNNNNGG	1 cut(s)	139
AjnI	CCWGG	2 cut(s)	258, 572
AluBI	AGCT	3 cut(s)	8, 28, 481
AluI	AGCT	3 cut(s)	8, 28, 481
Alw26I	GTCTC	2 cut(s)	155, 494
AlwI	GGATC	2 cut(s)	368, 458
AoxI	GGCC	5 cut(s)	122, 162, 218, 334, 532
ApeKI	GCWGC	2 cut(s)	78, 288
AspS9I	GGNCC	1 cut(s)	532
AxyI	CCTNAGG	1 cut(s)	338
BbvCI	CCTCAGC	1 cut(s)	306
BbvI	GCAGC	2 cut(s)	65, 300
BccI	CCATC	1 cut(s)	49
BceAI	ACGGC	1 cut(s)	132
BciT130I	CCWGG	2 cut(s)	260, 574
BcoDI	GTCTC	2 cut(s)	155, 494
BglI	GCCNNNNNGGC	1 cut(s)	153
BisI	GCNGC	2 cut(s)	79, 289
BlsI	GCNGC	2 cut(s)	80, 290
BmcAI	AGTACT	1 cut(s)	386
Bme1390I	CCNGG	2 cut(s)	260, 574
BmgT120I	GGNCC	1 cut(s)	532
BmrFI	CCNGG	2 cut(s)	260, 574
BmsI	GCATC	1 cut(s)	106
BoxI	GACNNNNGTC	1 cut(s)	90
Bpu10I	CCTNAGC	1 cut(s)	306
BsaI	GGTCTC	1 cut(s)	494
BsaJI	CCNNGG	2 cut(s)	228, 259
BsaXI	ACNNNNNCTCC	2 cut(s)	578, 608
Bsc4I	CCNNNNNNNGG	1 cut(s)	139
Bse1I	ACTGG	3 cut(s)	221, 362, 452
Bse21I	CCTNAGG	1 cut(s)	338
BseBI	CCWGG	2 cut(s)	260, 574
BseDI	CCNNGG	2 cut(s)	228, 259
BseGI	GGATG	1 cut(s)	97
BseLI	CCNNNNNNNGG	1 cut(s)	139
BseMII	CTCAG	1 cut(s)	297
BseNI	ACTGG	3 cut(s)	221, 362, 452
BseRI	GAGGAG	1 cut(s)	323
BseXI	GCAGC	2 cut(s)	65, 300
BseYI	CCCAGC	3 cut(s)	81, 317, 500
BshFI	GGCC	5 cut(s)	124, 164, 220, 336, 534
BslFI	GGGAC	2 cut(s)	98, 531
BslI	CCNNNNNNNGG	1 cut(s)	139
BsmAI	GTCTC	2 cut(s)	155, 494
BsmBI	CGTCTC	1 cut(s)	155
BsmFI	GGGAC	2 cut(s)	98, 531
BsnI	GGCC	5 cut(s)	124, 164, 220, 336, 534
Bso31I	GGTCTC	1 cut(s)	494
Bsp143I	GATC	2 cut(s)	360, 450
BspACI	CCGC	2 cut(s)	34, 130
BspANI	GGCC	5 cut(s)	124, 164, 220, 336, 534
BspCNI	CTCAG	1 cut(s)	298
BspPI	GGATC	2 cut(s)	368, 458
BspTNI	GGTCTC	1 cut(s)	494
BsrI	ACTGG	3 cut(s)	221, 362, 452
BssECI	CCNNGG	2 cut(s)	228, 259
BssMI	GATC	2 cut(s)	360, 450
BssT1I	CCWWGG	1 cut(s)	228
Bst2UI	CCWGG	2 cut(s)	260, 574
Bst4CI	ACNGT	4 cut(s)	92, 188, 421, 611
Bst6I	CTCTTC	1 cut(s)	572
BstC8I	GCNNGC	2 cut(s)	145, 315
BstDEI	CTNAG	2 cut(s)	306, 338
BstF5I	GGATG	1 cut(s)	97
BstKTI	GATC	2 cut(s)	363, 453
BstMAI	GTCTC	2 cut(s)	155, 494
BstMBI	GATC	2 cut(s)	360, 450
BstMWI	GCNNNNNNNGC	4 cut(s)	40, 153, 319, 478
BstNI	CCWGG	2 cut(s)	260, 574
BstPAI	GACNNNNGTC	1 cut(s)	90
BstSCI	CCNGG	2 cut(s)	258, 572
BstV1I	GCAGC	2 cut(s)	65, 300
Bsu36I	CCTNAGG	1 cut(s)	338
BsuRI	GGCC	5 cut(s)	124, 164, 220, 336, 534
BtsCI	GGATG	1 cut(s)	97
Cac8I	GCNNGC	2 cut(s)	145, 315
Cfr13I	GGNCC	1 cut(s)	532
Csp6I	GTAC	1 cut(s)	385
CviQI	GTAC	1 cut(s)	385
DdeI	CTNAG	2 cut(s)	306, 338
DpnI	GATC	2 cut(s)	362, 452
DpnII	GATC	2 cut(s)	360, 450
Eam1104I	CTCTTC	1 cut(s)	572
EarI	CTCTTC	1 cut(s)	572
EciI	GGCGGA	1 cut(s)	49
Eco130I	CCWWGG	1 cut(s)	228
Eco147I	AGGCCT	1 cut(s)	124
Eco31I	GGTCTC	1 cut(s)	494
Eco81I	CCTNAGG	1 cut(s)	338
EcoRII	CCWGG	2 cut(s)	258, 572
EcoT14I	CCWWGG	1 cut(s)	228
ErhI	CCWWGG	1 cut(s)	228
Esp3I	CGTCTC	1 cut(s)	155
FaiI	YATR	4 cut(s)	18, 31, 177, 243
FaqI	GGGAC	2 cut(s)	98, 531
FauI	CCCGC	1 cut(s)	137
Fnu4HI	GCNGC	2 cut(s)	79, 289
FokI	GGATG	1 cut(s)	84
Fsp4HI	GCNGC	2 cut(s)	79, 289
GluI	GCNGC	2 cut(s)	79, 289
GsaI	CCCAGC	3 cut(s)	85, 321, 504
HaeIII	GGCC	5 cut(s)	124, 164, 220, 336, 534
HinfI	GANTC	4 cut(s)	114, 371, 441, 550
Hpy166II	GTNNAC	1 cut(s)	466
Hpy188I	TCNGA	3 cut(s)	25, 49, 113
Hpy188III	TCNNGA	2 cut(s)	67, 427
Hpy8I	GTNNAC	1 cut(s)	466
Hpy99I	CGWCG	1 cut(s)	606
HpyAV	CCTTC	3 cut(s)	111, 567, 608
HpyCH4III	ACNGT	4 cut(s)	92, 188, 421, 611
HpyF10VI	GCNNNNNNNGC	4 cut(s)	40, 153, 319, 478
HpyF3I	CTNAG	2 cut(s)	306, 338
Kzo9I	GATC	2 cut(s)	360, 450
LmnI	GCTCC	3 cut(s)	5, 25, 310
Lsp1109I	GCAGC	2 cut(s)	65, 300
LweI	GCATC	1 cut(s)	106
MaeIII	GTNAC	2 cut(s)	115, 265
MalI	GATC	2 cut(s)	362, 452
MboI	GATC	2 cut(s)	360, 450
MboII	GAAGA	3 cut(s)	49, 517, 589
MluCI	AATT	2 cut(s)	349, 538
MlyI	GAGTC	1 cut(s)	123
MmeI	TCCRAC	1 cut(s)	307
MnlI	CCTC	8 cut(s)	63, 192, 210, 288, 301, 361, 385, 602
MspR9I	CCNGG	2 cut(s)	260, 574
MvaI	CCWGG	2 cut(s)	260, 574
MwoI	GCNNNNNNNGC	4 cut(s)	40, 153, 319, 478
NdeII	GATC	2 cut(s)	360, 450
NmeAIII	GCCGAG	1 cut(s)	132
NmuCI	GTSAC	1 cut(s)	115
PceI	AGGCCT	1 cut(s)	124
PcsI	WCGNNNNNNNCGW	1 cut(s)	607
PfeI	GAWTC	3 cut(s)	371, 441, 550
PkrI	GCNGC	2 cut(s)	80, 290
PleI	GAGTC	1 cut(s)	122
PpsI	GAGTC	1 cut(s)	122
PshAI	GACNNNNGTC	1 cut(s)	90
Psp6I	CCWGG	2 cut(s)	258, 572
PspFI	CCCAGC	3 cut(s)	81, 317, 500
PspGI	CCWGG	2 cut(s)	258, 572
PspPI	GGNCC	1 cut(s)	532
RsaI	GTAC	1 cut(s)	386
RsaNI	GTAC	1 cut(s)	385
SatI	GCNGC	2 cut(s)	79, 289
Sau3AI	GATC	2 cut(s)	360, 450
Sau96I	GGNCC	1 cut(s)	532
ScaI	AGTACT	1 cut(s)	386
SchI	GAGTC	1 cut(s)	123
ScrFI	CCNGG	2 cut(s)	260, 574
SetI	ASST	7 cut(s)	10, 30, 299, 380, 396, 483, 575
SfaNI	GCATC	1 cut(s)	106
Sse9I	AATT	2 cut(s)	349, 538
SseBI	AGGCCT	1 cut(s)	124
SsiI	CCGC	2 cut(s)	34, 130
StuI	AGGCCT	1 cut(s)	124
StyD4I	CCNGG	2 cut(s)	258, 572
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	4 cut(s)	92, 188, 421, 611
TaqI	TCGA	2 cut(s)	104, 390
TasI	AATT	2 cut(s)	349, 538
TatI	WGTACW	1 cut(s)	384
TfiI	GAWTC	3 cut(s)	371, 441, 550
TseFI	GTSAC	1 cut(s)	115
TseI	GCWGC	2 cut(s)	78, 288
Tsp45I	GTSAC	1 cut(s)	115
TspGWI	ACGGA	1 cut(s)	182
XcmI	CCANNNNNNNNNTGG	1 cut(s)	444
ZrmI	AGTACT	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.