Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001714.1

Orthogroup ID

OG0005376

Physical Location & Seq

Genomic Coordinates Reverse (-)

25541 .. 28672

Gene Structure 3132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001714.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

atgagtgtatgtgcagcagagttggccaaagctctcaaagggcagtggagtgaccacggttcaagccttggcgaccttgttgatttgaagtttaggctaactatgtggaggtttgatgcaattgggggtaatatgaggcaagctgtgaagatccgatgcaggtggggctctggtacatgtggtggcatttgcaggtggtggcgacccgaggcaggagatatggtaaaattgggttgggcttggctggttgcatgttgcttgtgcgccgcacctcatttcgcaaccatgggagcttacaagtatgtgtcggagctatggcggaagaagcaatctgatgtgatggggttcgtccagagggttcgctgctgggactaccgtcagcacccttcgattgtccgagtcacaaggcccacccgccctgacaaggctcgccgtctcggctacaaggccaagcagggatatgttatctaccgtgtccgtgtgaggcgtggtggtcgcaagaggccagttgccaagggtatcgtgtatggtaagcccaccaaccagggagttactcaactaaagttccaacgcagcaagaggtctgtcgctgaggagcgtgctgggcgtaagttgggtggccttagggttctcaattcctactggatcaatgaggactctacctacaagtacttcgaggttattctcgttgatgttgctcacacagttatcaagaaagacccaagaatcaactggatcgtcaatcctgttcacaagcacagagagcttcgtggtctcacatctgctgggaagaaatacaggggactgcgtggaaagggccacaattaccacaagaatcgtccttctcgcagggcaacctggaagagaaacaacaccctctcccttcgtcgctaccgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L15e

Protein Analysis

299

Amino Acids

34.66

Weight (kDa)

10.87

Isoelectric Point (pI)

39.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16720 AT4G17390
fragaria_vesca	FvH4_5g19240
malus_domestica	MD04G1062000.v1.1 MD06G1055700.v1.1 MD14G1017500.v1.1
prunus_persica	Prupe.2G275400_v2.0.a1 Prupe.5G066200_v2.0.a1 Prupe.7G040900_v2.0.a1
pyrus_communis	pycom04g05560 pycom14g01540
rosa_chinensis	RchiOBHm_Chr1g0374091 RchiOBHm_Chr7g0203741
rosa_laevigata	RLG00000003508 RLG00000026764
rosa_multiflora	Rmu_sc0000876.1_g000037 Rmu_sc0001714.1_g000007 Rmu_sc0006924.1_g000011
rosa_roxburghii	Rroxscaffold_3G00253580 Rroxscaffold_4G00283750
rosa_rugosa	Rorug01G0380700
rosa_samantha	Rh1AG391400 Rh1BG355400 Rh1CG368400 Rh1DG386100 Rh7BG207300 Rh7DG215200
rosa_wichuraiana	Rw1G034420 Rw7G018140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	150, 183
Acc36I	ACCTGC	2 cut(s)	150, 183
AciI	CCGC	3 cut(s)	267, 319, 415
AclWI	GGATC	3 cut(s)	145, 653, 743
AcoI	YGGCCR	1 cut(s)	24
AfaI	GTAC	2 cut(s)	175, 671
AfiI	CCNNNNNNNGG	2 cut(s)	212, 424
AflIII	ACRYGT	1 cut(s)	176
AgsI	TTSAA	2 cut(s)	63, 88
AjnI	CCWGG	2 cut(s)	543, 857
AluBI	AGCT	5 cut(s)	32, 143, 293, 313, 766
AluI	AGCT	5 cut(s)	32, 143, 293, 313, 766
Alw26I	GTCTC	2 cut(s)	440, 779
AlwI	GGATC	3 cut(s)	145, 653, 743
Ama87I	CYCGRG	1 cut(s)	206
AoxI	GGCC	6 cut(s)	24, 407, 447, 503, 619, 817
ApeKI	GCWGC	3 cut(s)	14, 363, 573
AspLEI	GCGC	1 cut(s)	266
AspS9I	GGNCC	2 cut(s)	408, 817
AvaI	CYCGRG	1 cut(s)	206
AxyI	CCTNAGG	1 cut(s)	623
BalI	TGGCCA	1 cut(s)	26
BanII	GRGCYC	1 cut(s)	170
BbvCI	CCTCAGC	1 cut(s)	591
BbvI	GCAGC	3 cut(s)	26, 350, 585
BccI	CCATC	1 cut(s)	334
BceAI	ACGGC	1 cut(s)	417
BciT130I	CCWGG	2 cut(s)	545, 859
BcoDI	GTCTC	2 cut(s)	440, 779
BfuAI	ACCTGC	2 cut(s)	150, 183
BglI	GCCNNNNNGGC	1 cut(s)	438
BisI	GCNGC	4 cut(s)	15, 267, 364, 574
BlsI	GCNGC	4 cut(s)	16, 268, 365, 575
BmcAI	AGTACT	1 cut(s)	671
Bme1390I	CCNGG	2 cut(s)	545, 859
BmeT110I	CYCGRG	1 cut(s)	206
BmgT120I	GGNCC	2 cut(s)	408, 817
BmrFI	CCNGG	2 cut(s)	545, 859
BmsI	GCATC	2 cut(s)	106, 146
BoxI	GACNNNNGTC	1 cut(s)	375
Bpu10I	CCTNAGC	1 cut(s)	591
BsaI	GGTCTC	1 cut(s)	779
BsaJI	CCNNGG	6 cut(s)	55, 67, 207, 285, 513, 544
BsaXI	ACNNNNNCTCC	4 cut(s)	207, 237, 863, 893
Bsc4I	CCNNNNNNNGG	2 cut(s)	212, 424
Bse1I	ACTGG	3 cut(s)	506, 647, 737
Bse21I	CCTNAGG	1 cut(s)	623
BseBI	CCWGG	2 cut(s)	545, 859
BseDI	CCNNGG	6 cut(s)	55, 67, 207, 285, 513, 544
BseLI	CCNNNNNNNGG	2 cut(s)	212, 424
BseMII	CTCAG	1 cut(s)	582
BseNI	ACTGG	3 cut(s)	506, 647, 737
BseRI	GAGGAG	1 cut(s)	608
BseXI	GCAGC	3 cut(s)	26, 350, 585
BseYI	CCCAGC	3 cut(s)	366, 602, 785
BsgI	GTGCAG	1 cut(s)	33
BshFI	GGCC	6 cut(s)	26, 409, 449, 505, 621, 819
BsiHKCI	CYCGRG	1 cut(s)	206
BslFI	GGGAC	2 cut(s)	383, 816
BslI	CCNNNNNNNGG	2 cut(s)	212, 424
BsmAI	GTCTC	2 cut(s)	440, 779
BsmBI	CGTCTC	1 cut(s)	440
BsmFI	GGGAC	2 cut(s)	383, 816
BsnI	GGCC	6 cut(s)	26, 409, 449, 505, 621, 819
Bso31I	GGTCTC	1 cut(s)	779
BsoBI	CYCGRG	1 cut(s)	206
Bsp1286I	GDGCHC	1 cut(s)	170
Bsp143I	GATC	3 cut(s)	150, 645, 735
Bsp19I	CCATGG	1 cut(s)	285
BspACI	CCGC	3 cut(s)	267, 319, 415
BspANI	GGCC	6 cut(s)	26, 409, 449, 505, 621, 819
BspCNI	CTCAG	1 cut(s)	583
BspMI	ACCTGC	2 cut(s)	150, 183
BspPI	GGATC	3 cut(s)	145, 653, 743
BspTNI	GGTCTC	1 cut(s)	779
BsrI	ACTGG	3 cut(s)	506, 647, 737
BssECI	CCNNGG	6 cut(s)	55, 67, 207, 285, 513, 544
BssMI	GATC	3 cut(s)	150, 645, 735
BssT1I	CCWWGG	3 cut(s)	67, 285, 513
Bst2UI	CCWGG	2 cut(s)	545, 859
Bst4CI	ACNGT	5 cut(s)	59, 377, 473, 706, 896
Bst6I	CTCTTC	1 cut(s)	857
BstC8I	GCNNGC	3 cut(s)	141, 430, 600
BstDEI	CTNAG	2 cut(s)	591, 623
BstDSI	CCRYGG	2 cut(s)	55, 285
BstHHI	GCGC	1 cut(s)	266
BstKTI	GATC	3 cut(s)	153, 648, 738
BstMAI	GTCTC	2 cut(s)	440, 779
BstMBI	GATC	3 cut(s)	150, 645, 735
BstMWI	GCNNNNNNNGC	6 cut(s)	23, 165, 325, 438, 604, 763
BstNI	CCWGG	2 cut(s)	545, 859
BstNSI	RCATGY	2 cut(s)	180, 255
BstPAI	GACNNNNGTC	1 cut(s)	375
BstSCI	CCNGG	2 cut(s)	543, 857
BstV1I	GCAGC	3 cut(s)	26, 350, 585
BstX2I	RGATCY	1 cut(s)	150
BstYI	RGATCY	1 cut(s)	150
Bsu36I	CCTNAGG	1 cut(s)	623
BsuRI	GGCC	6 cut(s)	26, 409, 449, 505, 621, 819
BtgI	CCRYGG	2 cut(s)	55, 285
BtsI	GCAGTG	1 cut(s)	50
BtsIMutI	CAGTG	1 cut(s)	50
BveI	ACCTGC	2 cut(s)	150, 183
Cac8I	GCNNGC	3 cut(s)	141, 430, 600
CfoI	GCGC	1 cut(s)	266
Cfr13I	GGNCC	2 cut(s)	408, 817
Csp6I	GTAC	2 cut(s)	174, 670
CviAII	CATG	3 cut(s)	177, 252, 286
CviQI	GTAC	2 cut(s)	174, 670
DdeI	CTNAG	2 cut(s)	591, 623
DpnI	GATC	3 cut(s)	152, 647, 737
DpnII	GATC	3 cut(s)	150, 645, 735
EaeI	YGGCCR	1 cut(s)	24
Eam1104I	CTCTTC	1 cut(s)	857
EarI	CTCTTC	1 cut(s)	857
EciI	GGCGGA	1 cut(s)	334
Eco130I	CCWWGG	3 cut(s)	67, 285, 513
Eco24I	GRGCYC	1 cut(s)	170
Eco31I	GGTCTC	1 cut(s)	779
Eco81I	CCTNAGG	1 cut(s)	623
Eco88I	CYCGRG	1 cut(s)	206
EcoRII	CCWGG	2 cut(s)	543, 857
EcoT14I	CCWWGG	3 cut(s)	67, 285, 513
EcoT38I	GRGCYC	1 cut(s)	170
ErhI	CCWWGG	3 cut(s)	67, 285, 513
Esp3I	CGTCTC	1 cut(s)	440
FaeI	CATG	3 cut(s)	180, 255, 289
FaqI	GGGAC	2 cut(s)	383, 816
FatI	CATG	3 cut(s)	176, 251, 285
FauI	CCCGC	1 cut(s)	422
Fnu4HI	GCNGC	4 cut(s)	15, 267, 364, 574
FriOI	GRGCYC	1 cut(s)	170
Fsp4HI	GCNGC	4 cut(s)	15, 267, 364, 574
GlaI	GCGC	1 cut(s)	265
GluI	GCNGC	4 cut(s)	15, 267, 364, 574
GsaI	CCCAGC	3 cut(s)	370, 606, 789
HaeIII	GGCC	6 cut(s)	26, 409, 449, 505, 621, 819
HhaI	GCGC	1 cut(s)	266
Hin1II	CATG	3 cut(s)	180, 255, 289
Hin6I	GCGC	1 cut(s)	264
HinP1I	GCGC	1 cut(s)	264
HinfI	GANTC	4 cut(s)	399, 656, 726, 835
Hpy166II	GTNNAC	1 cut(s)	751
Hpy188I	TCNGA	4 cut(s)	155, 310, 334, 398
Hpy188III	TCNNGA	2 cut(s)	352, 712
Hpy8I	GTNNAC	1 cut(s)	751
Hpy99I	CGWCG	1 cut(s)	891
HpyAV	CCTTC	3 cut(s)	396, 852, 893
HpyCH4III	ACNGT	5 cut(s)	59, 377, 473, 706, 896
HpyCH4V	TGCA	5 cut(s)	14, 119, 159, 192, 251
HpyF10VI	GCNNNNNNNGC	6 cut(s)	23, 165, 325, 438, 604, 763
HpyF3I	CTNAG	2 cut(s)	591, 623
Hsp92II	CATG	3 cut(s)	180, 255, 289
HspAI	GCGC	1 cut(s)	264
Kzo9I	GATC	3 cut(s)	150, 645, 735
LmnI	GCTCC	3 cut(s)	290, 310, 595
Lsp1109I	GCAGC	3 cut(s)	26, 350, 585
LweI	GCATC	2 cut(s)	106, 146
MaeIII	GTNAC	3 cut(s)	50, 400, 550
MalI	GATC	3 cut(s)	152, 647, 737
MboI	GATC	3 cut(s)	150, 645, 735
MboII	GAAGA	4 cut(s)	160, 334, 802, 874
MfeI	CAATTG	1 cut(s)	120
MflI	RGATCY	1 cut(s)	150
MhlI	GDGCHC	1 cut(s)	170
MlsI	TGGCCA	1 cut(s)	26
MluCI	AATT	4 cut(s)	120, 227, 634, 823
MluNI	TGGCCA	1 cut(s)	26
MlyI	GAGTC	2 cut(s)	408, 650
MmeI	TCCRAC	2 cut(s)	288, 592
Mox20I	TGGCCA	1 cut(s)	26
MscI	TGGCCA	1 cut(s)	26
Msp20I	TGGCCA	1 cut(s)	26
MspR9I	CCNGG	2 cut(s)	545, 859
MunI	CAATTG	1 cut(s)	120
MvaI	CCWGG	2 cut(s)	545, 859
MwoI	GCNNNNNNNGC	6 cut(s)	23, 165, 325, 438, 604, 763
NcoI	CCATGG	1 cut(s)	285
NdeII	GATC	3 cut(s)	150, 645, 735
NlaIII	CATG	3 cut(s)	180, 255, 289
NmeAIII	GCCGAG	1 cut(s)	417
NmuCI	GTSAC	2 cut(s)	50, 400
NspI	RCATGY	2 cut(s)	180, 255
PaqCI	CACCTGC	2 cut(s)	150, 183
PciI	ACATGT	1 cut(s)	176
PcsI	WCGNNNNNNNCGW	1 cut(s)	892
PfeI	GAWTC	2 cut(s)	726, 835
PkrI	GCNGC	4 cut(s)	16, 268, 365, 575
PleI	GAGTC	2 cut(s)	407, 650
PpsI	GAGTC	2 cut(s)	407, 650
PscI	ACATGT	1 cut(s)	176
PshAI	GACNNNNGTC	1 cut(s)	375
Psp6I	CCWGG	2 cut(s)	543, 857
PspFI	CCCAGC	3 cut(s)	366, 602, 785
PspGI	CCWGG	2 cut(s)	543, 857
PspPI	GGNCC	2 cut(s)	408, 817
PsuI	RGATCY	1 cut(s)	150
RsaI	GTAC	2 cut(s)	175, 671
RsaNI	GTAC	2 cut(s)	174, 670
SatI	GCNGC	4 cut(s)	15, 267, 364, 574
Sau3AI	GATC	3 cut(s)	150, 645, 735
Sau96I	GGNCC	2 cut(s)	408, 817
ScaI	AGTACT	1 cut(s)	671
SchI	GAGTC	2 cut(s)	408, 650
ScrFI	CCNGG	2 cut(s)	545, 859
SduI	GDGCHC	1 cut(s)	170
SfaNI	GCATC	2 cut(s)	106, 146
Sse9I	AATT	4 cut(s)	120, 227, 634, 823
SsiI	CCGC	3 cut(s)	267, 319, 415
StyD4I	CCNGG	2 cut(s)	543, 857
StyI	CCWWGG	3 cut(s)	67, 285, 513
TaaI	ACNGT	5 cut(s)	59, 377, 473, 706, 896
TaqI	TCGA	2 cut(s)	389, 675
TasI	AATT	4 cut(s)	120, 227, 634, 823
TatI	WGTACW	1 cut(s)	669
TauI	GCSGC	1 cut(s)	269
TfiI	GAWTC	2 cut(s)	726, 835
TscAI	CASTG	1 cut(s)	50
TseFI	GTSAC	2 cut(s)	50, 400
TseI	GCWGC	3 cut(s)	14, 363, 573
Tsp45I	GTSAC	2 cut(s)	50, 400
TspGWI	ACGGA	1 cut(s)	467
TspRI	CASTG	1 cut(s)	50
XceI	RCATGY	2 cut(s)	180, 255
XcmI	CCANNNNNNNNNTGG	1 cut(s)	729
ZrmI	AGTACT	1 cut(s)	671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.