RLG00000003508

Belongs to the eukaryotic ribosomal protein eL15 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0005376
Physical Location & Seq
Forward (+)
49421138 .. 49423104
1967 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003508

Sequence Viewer

Length: 615 bp
ATGGGAGCTTACAAGTATGTGTCGGAGCTATGGCGGAAGAAGCAATCTGATGTGATGGGGTTCGTCCAGAGGGTTCGCTGCTGGGACTACCGTCAGCATCCTTCCATTGTCCGAGTCACAAGGCCCACCCGCCCTGACAAGGCTCGCCGTCTCGGCTACAAGGCCAAGCAGGGGTATGTTATCTACCGTGTCCGCGTGAGGCGTGGTGGTCGCAAGAGGCCTGTTGCCAAGGGTATCGTGTATGGTAAGCCCACCAACCAGGGAGTTACCCAACTAAAGTTCCAACGCAGCAAGAGGTCTGTTGCTGAGGAGCGTGCTGGGCGTAAGTTGGGTGGCCTTAGGGTTCTCAATTCCTACTGGATTAATGAGGATTCTACCTACAAGTACTTTGAGGTTATTCTCGTTGATGTTGCTCACACAGTTATCAAGAAAGACCCAAGAATCAACTGGATCGTCAATCCTGTTCACAAGCACAGAGAGCTTCGTGGTCTCACATCTGCTGGGAAGAAATACAGGGGACTGCGTGGAAAGGGCCACAATTACCACAAGAATCGTCCTTCTCGCAGGGCAACCTGGAAGAGAAACAACACCCTCTCCCTTCGTCGCTACCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L15e

Protein Analysis

205

Amino Acids

24.19

Weight (kDa)

11.39

Isoelectric Point (pI)

41.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L15e PF00827 2 - 190 2.6e-89 Ribosomal L15
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 195
AciI CCGC 3 cut(s) 34, 130, 193
AclWI GGATC 1 cut(s) 458
AfaI GTAC 1 cut(s) 386
AfiI CCNNNNNNNGG 2 cut(s) 139, 171
AjnI CCWGG 2 cut(s) 258, 572
AluBI AGCT 3 cut(s) 8, 28, 481
AluI AGCT 3 cut(s) 8, 28, 481
Alw26I GTCTC 2 cut(s) 155, 494
AlwI GGATC 1 cut(s) 458
AoxI GGCC 5 cut(s) 122, 162, 218, 334, 532
ApeKI GCWGC 2 cut(s) 78, 288
AseI ATTAAT 1 cut(s) 363
AspS9I GGNCC 2 cut(s) 123, 532
AxyI CCTNAGG 1 cut(s) 338
BbvCI CCTCAGC 1 cut(s) 306
BbvI GCAGC 2 cut(s) 65, 300
BccI CCATC 1 cut(s) 49
BceAI ACGGC 1 cut(s) 132
BciT130I CCWGG 2 cut(s) 260, 574
BcoDI GTCTC 2 cut(s) 155, 494
BglI GCCNNNNNGGC 1 cut(s) 153
BisI GCNGC 2 cut(s) 79, 289
BlsI GCNGC 2 cut(s) 80, 290
BmcAI AGTACT 1 cut(s) 386
Bme1390I CCNGG 2 cut(s) 260, 574
BmgT120I GGNCC 2 cut(s) 123, 532
BmrFI CCNGG 2 cut(s) 260, 574
BmsI GCATC 1 cut(s) 106
BoxI GACNNNNGTC 1 cut(s) 90
Bpu10I CCTNAGC 1 cut(s) 306
BsaI GGTCTC 1 cut(s) 494
BsaJI CCNNGG 2 cut(s) 228, 259
BsaXI ACNNNNNCTCC 2 cut(s) 578, 608
Bsc4I CCNNNNNNNGG 2 cut(s) 139, 171
Bse1I ACTGG 2 cut(s) 362, 452
Bse21I CCTNAGG 1 cut(s) 338
BseBI CCWGG 2 cut(s) 260, 574
BseDI CCNNGG 2 cut(s) 228, 259
BseGI GGATG 1 cut(s) 97
BseLI CCNNNNNNNGG 2 cut(s) 139, 171
BseMII CTCAG 1 cut(s) 297
BseNI ACTGG 2 cut(s) 362, 452
BseRI GAGGAG 1 cut(s) 323
BseXI GCAGC 2 cut(s) 65, 300
BseYI CCCAGC 3 cut(s) 81, 317, 500
Bsh1236I CGCG 1 cut(s) 195
BshFI GGCC 5 cut(s) 124, 164, 220, 336, 534
BslFI GGGAC 2 cut(s) 98, 531
BslI CCNNNNNNNGG 2 cut(s) 139, 171
BsmAI GTCTC 2 cut(s) 155, 494
BsmBI CGTCTC 1 cut(s) 155
BsmFI GGGAC 2 cut(s) 98, 531
BsnI GGCC 5 cut(s) 124, 164, 220, 336, 534
Bso31I GGTCTC 1 cut(s) 494
Bsp143I GATC 1 cut(s) 450
BspACI CCGC 3 cut(s) 34, 130, 193
BspANI GGCC 5 cut(s) 124, 164, 220, 336, 534
BspCNI CTCAG 1 cut(s) 298
BspFNI CGCG 1 cut(s) 195
BspPI GGATC 1 cut(s) 458
BspTNI GGTCTC 1 cut(s) 494
BsrI ACTGG 2 cut(s) 362, 452
BssECI CCNNGG 2 cut(s) 228, 259
BssMI GATC 1 cut(s) 450
BssT1I CCWWGG 1 cut(s) 228
Bst2UI CCWGG 2 cut(s) 260, 574
Bst4CI ACNGT 4 cut(s) 92, 188, 421, 611
Bst6I CTCTTC 1 cut(s) 572
BstC8I GCNNGC 2 cut(s) 145, 315
BstDEI CTNAG 2 cut(s) 306, 338
BstF5I GGATG 1 cut(s) 97
BstFNI CGCG 1 cut(s) 195
BstKTI GATC 1 cut(s) 453
BstMAI GTCTC 2 cut(s) 155, 494
BstMBI GATC 1 cut(s) 450
BstMWI GCNNNNNNNGC 4 cut(s) 40, 153, 319, 478
BstNI CCWGG 2 cut(s) 260, 574
BstPAI GACNNNNGTC 1 cut(s) 90
BstSCI CCNGG 2 cut(s) 258, 572
BstUI CGCG 1 cut(s) 195
BstV1I GCAGC 2 cut(s) 65, 300
Bsu36I CCTNAGG 1 cut(s) 338
BsuRI GGCC 5 cut(s) 124, 164, 220, 336, 534
BtsCI GGATG 1 cut(s) 97
Cac8I GCNNGC 2 cut(s) 145, 315
Cfr13I GGNCC 2 cut(s) 123, 532
Csp6I GTAC 1 cut(s) 385
CviQI GTAC 1 cut(s) 385
DdeI CTNAG 2 cut(s) 306, 338
DpnI GATC 1 cut(s) 452
DpnII GATC 1 cut(s) 450
Eam1104I CTCTTC 1 cut(s) 572
EarI CTCTTC 1 cut(s) 572
EciI GGCGGA 1 cut(s) 49
Eco130I CCWWGG 1 cut(s) 228
Eco147I AGGCCT 1 cut(s) 220
Eco31I GGTCTC 1 cut(s) 494
Eco81I CCTNAGG 1 cut(s) 338
EcoRII CCWGG 2 cut(s) 258, 572
EcoT14I CCWWGG 1 cut(s) 228
ErhI CCWWGG 1 cut(s) 228
Esp3I CGTCTC 1 cut(s) 155
FaiI YATR 4 cut(s) 18, 31, 177, 243
FaqI GGGAC 2 cut(s) 98, 531
FauI CCCGC 1 cut(s) 137
Fnu4HI GCNGC 2 cut(s) 79, 289
FokI GGATG 1 cut(s) 84
Fsp4HI GCNGC 2 cut(s) 79, 289
GluI GCNGC 2 cut(s) 79, 289
GsaI CCCAGC 3 cut(s) 85, 321, 504
HaeIII GGCC 5 cut(s) 124, 164, 220, 336, 534
HinfI GANTC 4 cut(s) 114, 371, 441, 550
Hpy166II GTNNAC 1 cut(s) 466
Hpy188I TCNGA 3 cut(s) 25, 49, 113
Hpy188III TCNNGA 2 cut(s) 67, 427
Hpy8I GTNNAC 1 cut(s) 466
Hpy99I CGWCG 1 cut(s) 606
HpyAV CCTTC 3 cut(s) 111, 567, 608
HpyCH4III ACNGT 4 cut(s) 92, 188, 421, 611
HpyF10VI GCNNNNNNNGC 4 cut(s) 40, 153, 319, 478
HpyF3I CTNAG 2 cut(s) 306, 338
Kzo9I GATC 1 cut(s) 450
LmnI GCTCC 3 cut(s) 5, 25, 310
Lsp1109I GCAGC 2 cut(s) 65, 300
LweI GCATC 1 cut(s) 106
MaeIII GTNAC 2 cut(s) 115, 265
MalI GATC 1 cut(s) 452
MboI GATC 1 cut(s) 450
MboII GAAGA 3 cut(s) 49, 517, 589
MluCI AATT 2 cut(s) 349, 538
MlyI GAGTC 1 cut(s) 123
MmeI TCCRAC 1 cut(s) 307
MnlI CCTC 8 cut(s) 63, 192, 210, 288, 301, 361, 385, 602
MseI TTAA 1 cut(s) 363
MspR9I CCNGG 2 cut(s) 260, 574
MvaI CCWGG 2 cut(s) 260, 574
MvnI CGCG 1 cut(s) 195
MwoI GCNNNNNNNGC 4 cut(s) 40, 153, 319, 478
NdeII GATC 1 cut(s) 450
NmeAIII GCCGAG 1 cut(s) 132
NmuCI GTSAC 1 cut(s) 115
PceI AGGCCT 1 cut(s) 220
PcsI WCGNNNNNNNCGW 1 cut(s) 607
PfeI GAWTC 3 cut(s) 371, 441, 550
PkrI GCNGC 2 cut(s) 80, 290
PleI GAGTC 1 cut(s) 122
PpsI GAGTC 1 cut(s) 122
PshAI GACNNNNGTC 1 cut(s) 90
PshBI ATTAAT 1 cut(s) 363
Psp6I CCWGG 2 cut(s) 258, 572
PspFI CCCAGC 3 cut(s) 81, 317, 500
PspGI CCWGG 2 cut(s) 258, 572
PspPI GGNCC 2 cut(s) 123, 532
RsaI GTAC 1 cut(s) 386
RsaNI GTAC 1 cut(s) 385
SaqAI TTAA 1 cut(s) 363
SatI GCNGC 2 cut(s) 79, 289
Sau3AI GATC 1 cut(s) 450
Sau96I GGNCC 2 cut(s) 123, 532
ScaI AGTACT 1 cut(s) 386
SchI GAGTC 1 cut(s) 123
ScrFI CCNGG 2 cut(s) 260, 574
SetI ASST 7 cut(s) 10, 30, 299, 380, 396, 483, 575
SfaNI GCATC 1 cut(s) 106
Sse9I AATT 2 cut(s) 349, 538
SseBI AGGCCT 1 cut(s) 220
SsiI CCGC 3 cut(s) 34, 130, 193
StuI AGGCCT 1 cut(s) 220
StyD4I CCNGG 2 cut(s) 258, 572
StyI CCWWGG 1 cut(s) 228
TaaI ACNGT 4 cut(s) 92, 188, 421, 611
TasI AATT 2 cut(s) 349, 538
TatI WGTACW 1 cut(s) 384
TfiI GAWTC 3 cut(s) 371, 441, 550
Tru1I TTAA 1 cut(s) 363
Tru9I TTAA 1 cut(s) 363
TseFI GTSAC 1 cut(s) 115
TseI GCWGC 2 cut(s) 78, 288
Tsp45I GTSAC 1 cut(s) 115
VspI ATTAAT 1 cut(s) 363
XcmI CCANNNNNNNNNTGG 1 cut(s) 444
ZrmI AGTACT 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.