AT4G16745

Exostosin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0006790
Physical Location & Seq
Forward (+)
9411823 .. 9414897
3075 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G16745.1

Sequence Viewer

Length: 1629 bp
ATGGTGAATATTAAAAGCCCTTTACGGCTATTCATAGAGGAGTCGATTAAGGAATTAATTAGGGGTTTCAGGAGACAAAGGATCAAATGGAGAAATGCGTTTCTTCTTGGTTCTATAATGACTACCATTGTTGTTCTGCTTCATACACCAACGTTTTCAGTCTTCTCTGATGAAGAAGAAACCGAGTCTTCTTCTTCTTCGCCTATTTACTTGAATGGTTCTCTGCATTTGAATATCCATATTGTTAGTAGTGAAGCAAAAGTTGAAAATTTTCATACTCTTAGAACAAGAACTCCTATTGTGCAATTGAATGCTTCTGAAGCAAGTGAAGCTGTTCTTTCGAGAAAAAGGCGAAAAAGGAAGAAAAGAAAGAAGACAAAAGATGATCTGATTCTCACTGATCCTCCACCAGCACCACGACATGTTCTATCTTCCTCAGAGAGACGTGCTCTTTCCTTGCCACCGAAGAAAGCTCTTACTTATGCAAAACTGGAGATTCAGCGTGCCCCGGAGGTCATAAATGATACAGATCTGTTTGCCCCATTGTTTCGAAATCTCTCTGTTTTCAAAAGGAGCTATGAGCTTATGGAACTAATACTAAAGGTCTACATATATCCTGACGGAGACAAACCCATCTTCCACGAACCGCATTTAAATGGTATATATGCTTCAGAAGGTTGGTTTATGAAGCTAATGGAGTCAAACAAACAGTTTGTCACAAAGAACCCTGAGAGGGCTCACTTGTTCTACATGCCATATAGTGTGAAACAGCTTCAGAAAAGTATCTTTGTTCCTGGATCACATAACATCAAACCTTTATCGATCTTTCTTAGAGACTACGTCAACATGCTCTCCATCAAATACCCCTTCTGGAACCGCACTCATGGGTCAGATCATTTCCTTGTCGCTTGCCACGATTGGGGTCCTTACACAGTGAACGAGCACCCAGAGCTAAAACGAAACGCTATTAAAGCTCTCTGCAATGCAGACTTATCAGATGGAATCTTCGTCCCGGGGAAAGACGTTTCTCTCCCTGAAACATCCATAAGAAACGCAGGTAGACCACTACGCAACATAGGAAACGGAAACAGAGTTTCTCAACGTCCCATCCTCGCTTTCTTCGCTGGAAACCTCCACGGTCGTGTCCGTCCAAAGCTTCTAAAACACTGGAGAAACAAAGACGAGGACATGAAAATCTACGGTCCGCTTCCACACAACGTAGCTAGGAAAATGACTTACGTACAACACATGAAATCAAGCAAGTACTGTCTTTGTCCAATGGGTTACGAAGTGAACAGTCCACGTATCGTTGAAGCTATATACTATGAATGCGTCCCTGTAGTGATCGCTGATAACTTCATGTTACCGTTCAGCGATGTGCTAGATTGGTCAGCGTTCTCAGTGGTTGTACCGGAGAAGGAGATTCCACGGCTGAAGGAGATACTATTGGAGATTCCTATGAGGAGATATTTGAAGATGCAGAGTAACGTGAAGATGGTTCAGAGACATTTCTTGTGGAGCCCTAAACCTAGAAAGTACGATGTGTTTCATATGATACTTCACTCCATTTGGTTTAACCTTCTCAATCAAAACCAAACTTCTTTTGATGATCATATTCCCGATTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

542

Amino Acids

62.99

Weight (kDa)

9.67

Isoelectric Point (pI)

54.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 200 - 482 4.4e-67 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1046
AccI GTMKAC 2 cut(s) 606, 1060
AciI CCGC 3 cut(s) 647, 877, 1205
AclI AACGTT 1 cut(s) 152
AclWI GGATC 3 cut(s) 89, 395, 805
AcsI RAATTY 1 cut(s) 268
AcuI CTGAAG 4 cut(s) 339, 654, 758, 1454
AfaI GTAC 4 cut(s) 1242, 1265, 1410, 1538
AfiI CCNNNNNNNGG 2 cut(s) 733, 919
AflIII ACRYGT 1 cut(s) 421
AgsI TTSAA 7 cut(s) 214, 232, 266, 310, 568, 1313, 1474
AjiI CACGTC 1 cut(s) 446
AjnI CCWGG 1 cut(s) 793
AleI CACNNNNGTG 1 cut(s) 1140
AloI GAACNNNNNNTCC 2 cut(s) 277, 309
Alw21I GWGCWC 2 cut(s) 451, 945
Alw26I GTCTC 5 cut(s) 67, 436, 618, 828, 1498
AlwI GGATC 3 cut(s) 89, 395, 805
Ama87I CYCGRG 1 cut(s) 1012
ApoI RAATTY 1 cut(s) 268
ArsI GACNNNNNNTTYG 2 cut(s) 699, 731
AseI ATTAAT 1 cut(s) 56
Asp700I GAANNNNTTC 2 cut(s) 270, 333
AspS9I GGNCC 2 cut(s) 923, 1202
AsuC2I CCSGG 3 cut(s) 509, 1013, 1014
AsuHPI GGTGA 1 cut(s) 16
AsuII TTCGAA 1 cut(s) 550
AvaI CYCGRG 1 cut(s) 1012
AvaII GGWCC 2 cut(s) 923, 1202
BaeGI GKGCMC 1 cut(s) 508
BanII GRGCYC 2 cut(s) 739, 1523
BarI GAAGNNNNNNTAC 2 cut(s) 652, 684
BbsI GAAGAC 3 cut(s) 154, 180, 380
Bbv12I GWGCWC 2 cut(s) 451, 945
BccI CCATC 5 cut(s) 641, 863, 992, 1115, 1489
BceAI ACGGC 2 cut(s) 41, 1445
BciT130I CCWGG 1 cut(s) 795
BclI TGATCA 1 cut(s) 1609
BcnI CCSGG 3 cut(s) 509, 1013, 1014
BcoDI GTCTC 5 cut(s) 67, 436, 618, 828, 1498
BfaI CTAG 3 cut(s) 1224, 1382, 1530
BfmI CTRYAG 1 cut(s) 1338
BfuAI ACCTGC 1 cut(s) 1046
BglII AGATCT 1 cut(s) 529
BmcAI AGTACT 1 cut(s) 1265
Bme1390I CCNGG 4 cut(s) 509, 795, 1013, 1014
Bme18I GGWCC 2 cut(s) 923, 1202
BmeT110I CYCGRG 1 cut(s) 1012
BmgBI CACGTC 1 cut(s) 446
BmgT120I GGNCC 2 cut(s) 923, 1202
BmiI GGNNCC 3 cut(s) 875, 924, 1520
BmrFI CCNGG 4 cut(s) 509, 795, 1013, 1014
BmsI GCATC 1 cut(s) 1467
BpiI GAAGAC 3 cut(s) 154, 180, 380
BplI GAGNNNNNCTC 2 cut(s) 433, 465
BpmI CTGGAG 2 cut(s) 512, 1189
Bpu14I TTCGAA 1 cut(s) 550
BpuMI CCSGG 3 cut(s) 509, 1013, 1014
Bsa29I ATCGAT 1 cut(s) 821
BsaAI YACGTR 2 cut(s) 1240, 1304
BsaBI GATNNNNATC 1 cut(s) 528
BsaJI CCNNGG 5 cut(s) 507, 1012, 1013, 1135, 1427
BsaWI WCCGGW 1 cut(s) 1411
BsaXI ACNNNNNCTCC 6 cut(s) 277, 307, 388, 418, 836, 866
Bsc4I CCNNNNNNNGG 2 cut(s) 733, 919
Bse1I ACTGG 2 cut(s) 495, 1172
Bse3DI GCAATG 1 cut(s) 988
Bse8I GATNNNNATC 1 cut(s) 528
BseBI CCWGG 1 cut(s) 795
BseCI ATCGAT 1 cut(s) 821
BseDI CCNNGG 5 cut(s) 507, 1012, 1013, 1135, 1427
BseGI GGATG 2 cut(s) 1040, 1107
BseJI GATNNNNATC 1 cut(s) 528
BseLI CCNNNNNNNGG 2 cut(s) 733, 919
BseMI GCAATG 1 cut(s) 988
BseMII CTCAG 3 cut(s) 450, 720, 1413
BseNI ACTGG 2 cut(s) 495, 1172
BseRI GAGGAG 2 cut(s) 53, 1477
BseSI GKGCMC 1 cut(s) 508
Bsh1285I CGRYCG 1 cut(s) 1141
BshVI ATCGAT 1 cut(s) 821
BsiEI CGRYCG 1 cut(s) 1141
BsiHKAI GWGCWC 2 cut(s) 451, 945
BsiHKCI CYCGRG 1 cut(s) 1012
BsiSI CCGG 3 cut(s) 509, 1013, 1412
BslFI GGGAC 3 cut(s) 995, 1089, 1319
BslI CCNNNNNNNGG 2 cut(s) 733, 919
BsmAI GTCTC 5 cut(s) 67, 436, 618, 828, 1498
BsmBI CGTCTC 1 cut(s) 436
BsmFI GGGAC 3 cut(s) 995, 1089, 1319
BsmI GAATGC 2 cut(s) 316, 1334
BsoBI CYCGRG 1 cut(s) 1012
Bsp119I TTCGAA 1 cut(s) 550
Bsp1286I GDGCHC 5 cut(s) 451, 508, 739, 945, 1523
Bsp143I GATC 9 cut(s) 81, 385, 400, 529, 797, 822, 892, 1344, 1609
BspACI CCGC 3 cut(s) 647, 877, 1205
BspCNI CTCAG 3 cut(s) 449, 721, 1412
BspDI ATCGAT 1 cut(s) 821
BspLI GGNNCC 3 cut(s) 875, 924, 1520
BspMI ACCTGC 1 cut(s) 1046
BspPI GGATC 3 cut(s) 89, 395, 805
BspT104I TTCGAA 1 cut(s) 550
BsrDI GCAATG 1 cut(s) 988
BsrI ACTGG 2 cut(s) 495, 1172
BssECI CCNNGG 5 cut(s) 507, 1012, 1013, 1135, 1427
BssMI GATC 9 cut(s) 81, 385, 400, 529, 797, 822, 892, 1344, 1609
Bst2UI CCWGG 1 cut(s) 795
Bst4CI ACNGT 7 cut(s) 711, 934, 1139, 1202, 1268, 1298, 1368
BstBAI YACGTR 2 cut(s) 1240, 1304
BstBI TTCGAA 1 cut(s) 550
BstC8I GCNNGC 2 cut(s) 504, 910
BstDEI CTNAG 5 cut(s) 281, 436, 729, 830, 1399
BstDSI CCRYGG 2 cut(s) 1135, 1427
BstF5I GGATG 2 cut(s) 1040, 1107
BstKTI GATC 9 cut(s) 84, 388, 403, 532, 800, 825, 895, 1347, 1612
BstMAI GTCTC 5 cut(s) 67, 436, 618, 828, 1498
BstMBI GATC 9 cut(s) 81, 385, 400, 529, 797, 822, 892, 1344, 1609
BstMCI CGRYCG 1 cut(s) 1141
BstMWI GCNNNNNNNGC 5 cut(s) 320, 329, 949, 971, 1121
BstNI CCWGG 1 cut(s) 795
BstNSI RCATGY 3 cut(s) 425, 754, 850
BstSCI CCNGG 4 cut(s) 507, 793, 1011, 1012
BstSFI CTRYAG 1 cut(s) 1338
BstSLI GKGCMC 1 cut(s) 508
BstSNI TACGTA 1 cut(s) 1240
BstV2I GAAGAC 3 cut(s) 154, 180, 380
BstX2I RGATCY 1 cut(s) 529
BstYI RGATCY 1 cut(s) 529
Bsu15I ATCGAT 1 cut(s) 821
BsuTUI ATCGAT 1 cut(s) 821
BtgI CCRYGG 2 cut(s) 1135, 1427
BtgZI GCGATG 1 cut(s) 1389
BtrI CACGTC 1 cut(s) 446
BtsCI GGATG 2 cut(s) 1040, 1107
BtsIMutI CAGTG 4 cut(s) 396, 939, 1165, 1407
BveI ACCTGC 1 cut(s) 1046
Cac8I GCNNGC 2 cut(s) 504, 910
Cfr13I GGNCC 2 cut(s) 923, 1202
Cfr9I CCCGGG 1 cut(s) 1012
ClaI ATCGAT 1 cut(s) 821
CpoI CGGWCCG 1 cut(s) 1202
CseI GACGC 1 cut(s) 1321
Csp6I GTAC 4 cut(s) 1241, 1264, 1409, 1537
CspI CGGWCCG 1 cut(s) 1202
CviAII CATG 7 cut(s) 422, 751, 847, 884, 1189, 1249, 1360
CviQI GTAC 4 cut(s) 1241, 1264, 1409, 1537
DdeI CTNAG 5 cut(s) 281, 436, 729, 830, 1399
DpnI GATC 9 cut(s) 83, 387, 402, 531, 799, 824, 894, 1346, 1611
DpnII GATC 9 cut(s) 81, 385, 400, 529, 797, 822, 892, 1344, 1609
DraI TTTAAA 1 cut(s) 654
Eco105I TACGTA 1 cut(s) 1240
Eco24I GRGCYC 2 cut(s) 739, 1523
Eco47I GGWCC 2 cut(s) 923, 1202
Eco57I CTGAAG 4 cut(s) 339, 654, 758, 1454
Eco88I CYCGRG 1 cut(s) 1012
EcoO109I RGGNCCY 1 cut(s) 923
EcoRII CCWGG 1 cut(s) 793
EcoT38I GRGCYC 2 cut(s) 739, 1523
Esp3I CGTCTC 1 cut(s) 436
FaeI CATG 7 cut(s) 425, 754, 850, 887, 1192, 1252, 1363
FalI AAGNNNNNCTT 2 cut(s) 321, 353
FaqI GGGAC 3 cut(s) 995, 1089, 1319
FatI CATG 7 cut(s) 421, 750, 846, 883, 1188, 1248, 1359
FauNDI CATATG 1 cut(s) 1551
FbaI TGATCA 1 cut(s) 1609
FblI GTMKAC 2 cut(s) 606, 1060
FokI GGATG 2 cut(s) 1027, 1094
FriOI GRGCYC 2 cut(s) 739, 1523
FspBI CTAG 3 cut(s) 1224, 1382, 1530
GsuI CTGGAG 2 cut(s) 512, 1189
HapII CCGG 3 cut(s) 509, 1013, 1412
HgaI GACGC 1 cut(s) 1321
Hin1II CATG 7 cut(s) 425, 754, 850, 887, 1192, 1252, 1363
HincII GTYRAC 1 cut(s) 844
HindII GTYRAC 1 cut(s) 844
HindIII AAGCTT 1 cut(s) 1154
HinfI GANTC 9 cut(s) 41, 185, 391, 496, 698, 1002, 1423, 1453, 1622
HpaII CCGG 3 cut(s) 509, 1013, 1412
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 6 cut(s) 607, 844, 937, 1061, 1294, 1301
Hpy188I TCNGA 9 cut(s) 169, 319, 390, 439, 673, 777, 892, 997, 1503
Hpy188III TCNNGA 6 cut(s) 70, 342, 617, 871, 1619, 1626
Hpy8I GTNNAC 6 cut(s) 607, 844, 937, 1061, 1294, 1301
HpyAV CCTTC 5 cut(s) 668, 877, 1411, 1429, 1589
HpyCH4III ACNGT 7 cut(s) 711, 934, 1139, 1202, 1268, 1298, 1368
HpyCH4IV ACGT 9 cut(s) 152, 445, 840, 1023, 1102, 1218, 1239, 1303, 1488
HpyCH4V TGCA 6 cut(s) 226, 304, 485, 981, 986, 1480
HpyF10VI GCNNNNNNNGC 5 cut(s) 320, 329, 949, 971, 1121
HpyF3I CTNAG 5 cut(s) 281, 436, 729, 830, 1399
HpySE526I ACGT 9 cut(s) 152, 445, 840, 1023, 1102, 1218, 1239, 1303, 1488
Hsp92II CATG 7 cut(s) 425, 754, 850, 887, 1192, 1252, 1363
Ksp22I TGATCA 1 cut(s) 1609
Kzo9I GATC 9 cut(s) 81, 385, 400, 529, 797, 822, 892, 1344, 1609
LmnI GCTCC 2 cut(s) 573, 1518
LweI GCATC 1 cut(s) 1467
MaeI CTAG 3 cut(s) 1224, 1382, 1530
MaeII ACGT 9 cut(s) 152, 445, 840, 1023, 1102, 1218, 1239, 1303, 1488
MaeIII GTNAC 4 cut(s) 715, 1283, 1362, 1484
MalI GATC 9 cut(s) 83, 387, 402, 531, 799, 824, 894, 1346, 1611
MboI GATC 9 cut(s) 81, 385, 400, 529, 797, 822, 892, 1344, 1609
MfeI CAATTG 1 cut(s) 305
MflI RGATCY 1 cut(s) 529
MhlI GDGCHC 5 cut(s) 451, 508, 739, 945, 1523
MluCI AATT 4 cut(s) 53, 57, 268, 305
MlyI GAGTC 3 cut(s) 50, 194, 707
MnlI CCTC 9 cut(s) 31, 414, 445, 505, 726, 1121, 1142, 1177, 1455
MroXI GAANNNNTTC 2 cut(s) 270, 333
MseI TTAA 6 cut(s) 12, 48, 56, 653, 969, 1575
MslI CAYNNNNRTG 2 cut(s) 654, 1140
MspI CCGG 3 cut(s) 509, 1013, 1412
MspR9I CCNGG 4 cut(s) 509, 795, 1013, 1014
MunI CAATTG 1 cut(s) 305
Mva1269I GAATGC 2 cut(s) 316, 1334
MvaI CCWGG 1 cut(s) 795
MwoI GCNNNNNNNGC 5 cut(s) 320, 329, 949, 971, 1121
NciI CCSGG 3 cut(s) 509, 1013, 1014
NdeI CATATG 1 cut(s) 1551
NdeII GATC 9 cut(s) 81, 385, 400, 529, 797, 822, 892, 1344, 1609
NlaIII CATG 7 cut(s) 425, 754, 850, 887, 1192, 1252, 1363
NlaIV GGNNCC 3 cut(s) 875, 924, 1520
NmuCI GTSAC 1 cut(s) 715
NspI RCATGY 3 cut(s) 425, 754, 850
NspV TTCGAA 1 cut(s) 550
OliI CACNNNNGTG 1 cut(s) 1140
PciI ACATGT 1 cut(s) 421
PcsI WCGNNNNNNNCGW 1 cut(s) 912
PctI GAATGC 2 cut(s) 316, 1334
PdmI GAANNNNTTC 2 cut(s) 270, 333
PfeI GAWTC 6 cut(s) 391, 496, 1002, 1423, 1453, 1622
PflFI GACNNNGTC 1 cut(s) 839
PfoI TCCNGGA 1 cut(s) 793
PleI GAGTC 3 cut(s) 49, 193, 706
PpsI GAGTC 3 cut(s) 49, 193, 706
Ppu21I YACGTR 2 cut(s) 1240, 1304
PpuMI RGGWCCY 1 cut(s) 923
PscI ACATGT 1 cut(s) 421
PshBI ATTAAT 1 cut(s) 56
Psp1406I AACGTT 1 cut(s) 152
Psp5II RGGWCCY 1 cut(s) 923
Psp6I CCWGG 1 cut(s) 793
PspGI CCWGG 1 cut(s) 793
PspN4I GGNNCC 3 cut(s) 875, 924, 1520
PspPI GGNCC 2 cut(s) 923, 1202
PspPPI RGGWCCY 1 cut(s) 923
PsuI RGATCY 1 cut(s) 529
PsyI GACNNNGTC 1 cut(s) 839
RsaI GTAC 4 cut(s) 1242, 1265, 1410, 1538
RsaNI GTAC 4 cut(s) 1241, 1264, 1409, 1537
RseI CAYNNNNRTG 2 cut(s) 654, 1140
Rsr2I CGGWCCG 1 cut(s) 1202
RsrII CGGWCCG 1 cut(s) 1202
SaqAI TTAA 6 cut(s) 12, 48, 56, 653, 969, 1575
Sau3AI GATC 9 cut(s) 81, 385, 400, 529, 797, 822, 892, 1344, 1609
Sau96I GGNCC 2 cut(s) 923, 1202
ScaI AGTACT 1 cut(s) 1265
SchI GAGTC 3 cut(s) 50, 194, 707
ScrFI CCNGG 4 cut(s) 509, 795, 1013, 1014
SduI GDGCHC 5 cut(s) 451, 508, 739, 945, 1523
SfaNI GCATC 1 cut(s) 1467
SfcI CTRYAG 1 cut(s) 1338
SfuI TTCGAA 1 cut(s) 550
SinI GGWCC 2 cut(s) 923, 1202
SmaI CCCGGG 1 cut(s) 1014
SmiI ATTTAAAT 1 cut(s) 654
SmiMI CAYNNNNRTG 2 cut(s) 654, 1140
SnaBI TACGTA 1 cut(s) 1240
Sse9I AATT 4 cut(s) 53, 57, 268, 305
SsiI CCGC 3 cut(s) 647, 877, 1205
SspI AATATT 1 cut(s) 10
SspMI CTAG 3 cut(s) 1224, 1382, 1530
StyD4I CCNGG 4 cut(s) 507, 793, 1011, 1012
SwaI ATTTAAAT 1 cut(s) 654
TaaI ACNGT 7 cut(s) 711, 934, 1139, 1202, 1268, 1298, 1368
TaiI ACGT 9 cut(s) 155, 448, 843, 1026, 1105, 1221, 1242, 1306, 1491
TaqI TCGA 4 cut(s) 44, 341, 550, 821
TasI AATT 4 cut(s) 53, 57, 268, 305
TatI WGTACW 1 cut(s) 1263
TfiI GAWTC 6 cut(s) 391, 496, 1002, 1423, 1453, 1622
Tru1I TTAA 6 cut(s) 12, 48, 56, 653, 969, 1575
Tru9I TTAA 6 cut(s) 12, 48, 56, 653, 969, 1575
TscAI CASTG 4 cut(s) 403, 939, 1172, 1407
TseFI GTSAC 1 cut(s) 715
Tsp45I GTSAC 1 cut(s) 715
TspGWI ACGGA 3 cut(s) 636, 1098, 1136
TspMI CCCGGG 1 cut(s) 1012
TspRI CASTG 4 cut(s) 403, 939, 1172, 1407
Tth111I GACNNNGTC 1 cut(s) 839
VpaK11BI GGWCC 2 cut(s) 923, 1202
VspI ATTAAT 1 cut(s) 56
XapI RAATTY 1 cut(s) 268
XceI RCATGY 3 cut(s) 425, 754, 850
XmaI CCCGGG 1 cut(s) 1012
XmiI GTMKAC 2 cut(s) 606, 1060
XmnI GAANNNNTTC 2 cut(s) 270, 333
XspI CTAG 3 cut(s) 1224, 1382, 1530
ZrmI AGTACT 1 cut(s) 1265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.