Rroxscaffold_3G00253480

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0006790
Physical Location & Seq
Reverse (-)
47519491 .. 47525112
5622 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00253480.1

Sequence Viewer

Length: 1416 bp
ATGAGAGAGTTATTGCAGAGCTTTGCTGTGATCATAATGAAAGAGTTTTTCCGGCTCTGTGCTGGGTTAAAAATTGACTGGAAAAAGTTGATCTTTGCTGGTGCCTTTATGACAACAGCCGGTGTGATTCTGCAAATGTTTCTACTTAATGATCCGCTTGACATGTGGTCCCTCTCTCTACCCATTGCAAATGTGTCAGACGAATCGTTGAACAGTATCAGGAGCTTTAATCAAACCTTTAGTGAGGGAAGGGTCAAAAGATTGCAACTCATTTCTGCTGATGTTCCCATTGTTCCACCAAACTCTTCTCTTAAGTTGAATCTCTCAGTTCCAGTTATGCCATATATTGGCACAGTTCCTAAAGGGAGATCAAGAAGGAGAAAGAAAGGTGGAAATGTAGATAACATGTCAAAGGTCATACCTCCTCCTGACCCTCCACGTATACATGTGCCTTATCGTTTGCAGAAATTCATTAGGTCCTTGACACCCAATGAGGCACTTGTGTATGCGAAGAAAGAGATTGATCATGCCCCTGAAGTTATTGATGATCCTGTTCTATATGCACCTTTATTTCGAAATATGTCTGTTTTCAAAAGGGTCCAACAGAGATCAGAAGGAAGGAGCTATGAGTTGATGGAATTGATACTTAAAGTTTACATTTACAGTGATGGGTCAAGGCCCATATTTCATGTACCTCATCTCAACGGAATTTATGCTTCTGAAGGATGGTTCATGAGGTTGATGGAGGGAAACAGGCAATTTGTCACAAGAGACCCAGAAAAGGCTCACTTATTTTATCTTCCTTACAGCATGCGCCAATTGGAGTTGAAGCTTTATGTACCTGGTTCACATCAAATTAAACCACTGGCAATATTCCTCAGAGACTATGTGAACATGATTGCTGGGAAGTATCCTTTCTGGAATCGCACGCATGGGACAGATCATTTTCTTGTTGCTTGCCATGACTGGGGGCCTTACACGCTTACTCAGCACGAGGAACTGGCCAACAATACAATAAAAGCTCTATGCAACGCTGACACCTCAGAAGGAGTTTTTGTTGCTGGGAAGGATGTTTCACTGCCAGAAACTAATATTAGGAACCCCAGGGTTCCCCTTAGAAATATTGGTGGATTAAGAGTGTCACAGCGCCCACTCCTTGCCTTCTTTGCAGGACGCATGCATGGCAGAGTCCGCCCGATACTTCTCAAGTACTGGCGGGACAAACATGAGGACATGAAAATCTATGGGCCTCTGCCATCTAGAATCTCCCGAAAGATGTCATATATCCAGCATATGAAGTCAAGTAAATTTTGTATTTGCCCAATGGGGTATGAAGTGAACAGCCCTAGGATCATTGAAGCCATATATTATGAGTGTGTCCCAGTGATAATTGCAGATAATTTCCCCCTCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

471

Amino Acids

54.18

Weight (kDa)

9.63

Isoelectric Point (pI)

49.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 216 - 470 2.9e-52 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 101
AccB7I CCANNNNNTGG 1 cut(s) 347
AccI GTMKAC 1 cut(s) 442
AciI CCGC 3 cut(s) 155, 1192, 1216
AclWI GGATC 3 cut(s) 146, 542, 1358
AcoI YGGCCR 1 cut(s) 1002
AcsI RAATTY 3 cut(s) 467, 708, 1307
AcuI CTGAAG 2 cut(s) 555, 741
AfaI GTAC 3 cut(s) 693, 840, 1211
AfiI CCNNNNNNNGG 3 cut(s) 347, 781, 967
AflII CTTAAG 1 cut(s) 311
AflIII ACRYGT 3 cut(s) 162, 405, 445
AgsI TTSAA 5 cut(s) 211, 319, 592, 829, 1358
AhdI GACNNNNNGTC 1 cut(s) 166
AjnI CCWGG 2 cut(s) 841, 1103
AluBI AGCT 5 cut(s) 21, 225, 624, 832, 1022
AluI AGCT 5 cut(s) 21, 225, 624, 832, 1022
Alw26I GTCTC 2 cut(s) 765, 876
AlwI GGATC 3 cut(s) 146, 542, 1358
AoxI GGCC 4 cut(s) 677, 971, 1002, 1247
ApoI RAATTY 3 cut(s) 467, 708, 1307
AspA2I CCTAGG 1 cut(s) 1346
AspLEI GCGC 2 cut(s) 816, 1149
AspS9I GGNCC 6 cut(s) 168, 477, 598, 678, 971, 1247
AsuII TTCGAA 1 cut(s) 574
AvaII GGWCC 3 cut(s) 168, 477, 598
AvrII CCTAGG 1 cut(s) 1346
BalI TGGCCA 1 cut(s) 1004
BanI GGYRCC 1 cut(s) 101
BauI CACGAG 1 cut(s) 992
BccI CCATC 5 cut(s) 628, 662, 720, 736, 1264
BciT130I CCWGG 2 cut(s) 843, 1105
BciVI GTATCC 1 cut(s) 921
BclI TGATCA 2 cut(s) 30, 523
BcoDI GTCTC 2 cut(s) 765, 876
BfaI CTAG 2 cut(s) 1260, 1347
BfoI RGCGCY 1 cut(s) 1150
BfrI CTTAAG 1 cut(s) 311
BfuI GTATCC 1 cut(s) 921
BlnI CCTAGG 1 cut(s) 1346
BmcAI AGTACT 1 cut(s) 1211
Bme1390I CCNGG 2 cut(s) 843, 1105
Bme18I GGWCC 3 cut(s) 168, 477, 598
BmeRI GACNNNNNGTC 1 cut(s) 166
BmgT120I GGNCC 6 cut(s) 168, 477, 598, 678, 971, 1247
BmiI GGNNCC 6 cut(s) 103, 170, 599, 972, 1100, 1110
BmrFI CCNGG 2 cut(s) 843, 1105
BmrI ACTGGG 2 cut(s) 976, 1376
BmuI ACTGGG 2 cut(s) 976, 1376
Bpu14I TTCGAA 1 cut(s) 574
BpuEI CTTGAG 1 cut(s) 1190
BsaAI YACGTR 1 cut(s) 440
BsaI GGTCTC 1 cut(s) 765
BsaJI CCNNGG 3 cut(s) 1103, 1104, 1346
BsaXI ACNNNNNCTCC 2 cut(s) 1041, 1071
Bsc4I CCNNNNNNNGG 3 cut(s) 347, 781, 967
Bse118I RCCGGY 1 cut(s) 119
Bse1I ACTGG 7 cut(s) 83, 332, 870, 971, 1005, 1217, 1382
Bse3DI GCAATG 1 cut(s) 183
BseBI CCWGG 2 cut(s) 843, 1105
BseDI CCNNGG 3 cut(s) 1103, 1104, 1346
BseGI GGATG 2 cut(s) 731, 1075
BseLI CCNNNNNNNGG 3 cut(s) 347, 781, 967
BseMI GCAATG 1 cut(s) 183
BseMII CTCAG 4 cut(s) 339, 892, 1001, 1056
BseNI ACTGG 7 cut(s) 83, 332, 870, 971, 1005, 1217, 1382
BseRI GAGGAG 1 cut(s) 414
BseYI CCCAGC 3 cut(s) 62, 902, 1061
BshFI GGCC 4 cut(s) 679, 973, 1004, 1249
BshNI GGYRCC 1 cut(s) 101
BsiSI CCGG 2 cut(s) 52, 120
BslFI GGGAC 4 cut(s) 154, 949, 1232, 1364
BslI CCNNNNNNNGG 3 cut(s) 347, 781, 967
BsmAI GTCTC 2 cut(s) 765, 876
BsmFI GGGAC 4 cut(s) 154, 949, 1232, 1364
BsnI GGCC 4 cut(s) 679, 973, 1004, 1249
Bso31I GGTCTC 1 cut(s) 765
Bsp119I TTCGAA 1 cut(s) 574
Bsp143I GATC 9 cut(s) 30, 90, 151, 368, 523, 547, 608, 940, 1350
BspACI CCGC 3 cut(s) 155, 1192, 1216
BspANI GGCC 4 cut(s) 679, 973, 1004, 1249
BspCNI CTCAG 4 cut(s) 338, 891, 1000, 1055
BspHI TCATGA 1 cut(s) 732
BspLI GGNNCC 6 cut(s) 103, 170, 599, 972, 1100, 1110
BspPI GGATC 3 cut(s) 146, 542, 1358
BspT104I TTCGAA 1 cut(s) 574
BspT107I GGYRCC 1 cut(s) 101
BspTI CTTAAG 1 cut(s) 311
BspTNI GGTCTC 1 cut(s) 765
BsrDI GCAATG 1 cut(s) 183
BsrFI RCCGGY 1 cut(s) 119
BsrI ACTGG 7 cut(s) 83, 332, 870, 971, 1005, 1217, 1382
BssAI RCCGGY 1 cut(s) 119
BssECI CCNNGG 3 cut(s) 1103, 1104, 1346
BssMI GATC 9 cut(s) 30, 90, 151, 368, 523, 547, 608, 940, 1350
BssNAI GTATAC 1 cut(s) 443
BssSI CACGAG 1 cut(s) 992
BssT1I CCWWGG 1 cut(s) 1346
Bst1107I GTATAC 1 cut(s) 443
Bst2BI CACGAG 1 cut(s) 992
Bst2UI CCWGG 2 cut(s) 843, 1105
Bst4CI ACNGT 3 cut(s) 215, 355, 665
Bst6I CTCTTC 1 cut(s) 310
BstAFI CTTAAG 1 cut(s) 311
BstBAI YACGTR 1 cut(s) 440
BstBI TTCGAA 1 cut(s) 574
BstC8I GCNNGC 4 cut(s) 812, 929, 958, 1178
BstDEI CTNAG 5 cut(s) 325, 878, 987, 1042, 1115
BstF5I GGATG 2 cut(s) 731, 1075
BstH2I RGCGCY 1 cut(s) 1150
BstHHI GCGC 2 cut(s) 816, 1149
BstKTI GATC 9 cut(s) 33, 93, 154, 371, 526, 550, 611, 943, 1353
BstMAI GTCTC 2 cut(s) 765, 876
BstMBI GATC 9 cut(s) 30, 90, 151, 368, 523, 547, 608, 940, 1350
BstMWI GCNNNNNNNGC 5 cut(s) 979, 988, 1166, 1182, 1191
BstNI CCWGG 2 cut(s) 843, 1105
BstNSI RCATGY 5 cut(s) 166, 409, 449, 814, 1180
BstSCI CCNGG 2 cut(s) 841, 1103
BstZ17I GTATAC 1 cut(s) 443
BsuI GTATCC 1 cut(s) 921
BsuRI GGCC 4 cut(s) 679, 973, 1004, 1249
BtsCI GGATG 2 cut(s) 731, 1075
BtsI GCAGTG 1 cut(s) 1076
BtsIMutI CAGTG 4 cut(s) 670, 863, 1076, 1389
Cac8I GCNNGC 4 cut(s) 812, 929, 958, 1178
CciI TCATGA 1 cut(s) 732
CfoI GCGC 2 cut(s) 816, 1149
Cfr10I RCCGGY 1 cut(s) 119
Cfr13I GGNCC 6 cut(s) 168, 477, 598, 678, 971, 1247
CseI GACGC 1 cut(s) 1182
CsiI ACCWGGT 1 cut(s) 841
Csp6I GTAC 3 cut(s) 692, 839, 1210
CviQI GTAC 3 cut(s) 692, 839, 1210
DdeI CTNAG 5 cut(s) 325, 878, 987, 1042, 1115
DpnI GATC 9 cut(s) 32, 92, 153, 370, 525, 549, 610, 942, 1352
DpnII GATC 9 cut(s) 30, 90, 151, 368, 523, 547, 608, 940, 1350
DriI GACNNNNNGTC 1 cut(s) 166
EaeI YGGCCR 1 cut(s) 1002
Eam1104I CTCTTC 1 cut(s) 310
Eam1105I GACNNNNNGTC 1 cut(s) 166
EarI CTCTTC 1 cut(s) 310
EciI GGCGGA 1 cut(s) 1181
Eco130I CCWWGG 1 cut(s) 1346
Eco31I GGTCTC 1 cut(s) 765
Eco47I GGWCC 3 cut(s) 168, 477, 598
Eco57I CTGAAG 2 cut(s) 555, 741
EcoO109I RGGNCCY 2 cut(s) 477, 971
EcoRII CCWGG 2 cut(s) 841, 1103
EcoT14I CCWWGG 1 cut(s) 1346
EcoT22I ATGCAT 1 cut(s) 1182
ErhI CCWWGG 1 cut(s) 1346
FalI AAGNNNNNCTT 4 cut(s) 77, 109, 773, 805
FaqI GGGAC 4 cut(s) 154, 949, 1232, 1364
FauI CCCGC 1 cut(s) 1209
FauNDI CATATG 1 cut(s) 1293
FbaI TGATCA 2 cut(s) 30, 523
FblI GTMKAC 1 cut(s) 442
FokI GGATG 2 cut(s) 738, 1082
FspBI CTAG 2 cut(s) 1260, 1347
GlaI GCGC 2 cut(s) 815, 1148
GsaI CCCAGC 3 cut(s) 66, 906, 1065
HaeII RGCGCY 1 cut(s) 1150
HaeIII GGCC 4 cut(s) 679, 973, 1004, 1249
HapII CCGG 2 cut(s) 52, 120
HgaI GACGC 1 cut(s) 1182
HhaI GCGC 2 cut(s) 816, 1149
Hin6I GCGC 2 cut(s) 814, 1147
HinP1I GCGC 2 cut(s) 814, 1147
HindIII AAGCTT 1 cut(s) 830
HinfI GANTC 6 cut(s) 127, 203, 319, 922, 1188, 1263
HpaII CCGG 2 cut(s) 52, 120
Hpy166II GTNNAC 5 cut(s) 443, 655, 848, 892, 1339
Hpy188I TCNGA 5 cut(s) 199, 613, 721, 881, 1045
Hpy188III TCNNGA 7 cut(s) 220, 372, 428, 733, 919, 1260, 1269
Hpy8I GTNNAC 5 cut(s) 443, 655, 848, 892, 1339
HpyAV CCTTC 8 cut(s) 243, 369, 608, 612, 716, 1040, 1060, 1171
HpyCH4III ACNGT 3 cut(s) 215, 355, 665
HpyCH4IV ACGT 1 cut(s) 439
HpyF10VI GCNNNNNNNGC 5 cut(s) 979, 988, 1166, 1182, 1191
HpyF3I CTNAG 5 cut(s) 325, 878, 987, 1042, 1115
HpySE526I ACGT 1 cut(s) 439
HspAI GCGC 2 cut(s) 814, 1147
Ksp22I TGATCA 2 cut(s) 30, 523
Kzo9I GATC 9 cut(s) 30, 90, 151, 368, 523, 547, 608, 940, 1350
LmnI GCTCC 2 cut(s) 222, 621
MabI ACCWGGT 1 cut(s) 841
MaeI CTAG 2 cut(s) 1260, 1347
MaeII ACGT 1 cut(s) 439
MaeIII GTNAC 2 cut(s) 763, 1140
MalI GATC 9 cut(s) 32, 92, 153, 370, 525, 549, 610, 942, 1352
MboI GATC 9 cut(s) 30, 90, 151, 368, 523, 547, 608, 940, 1350
MboII GAAGA 3 cut(s) 297, 523, 791
MfeI CAATTG 1 cut(s) 818
MlsI TGGCCA 1 cut(s) 1004
MluNI TGGCCA 1 cut(s) 1004
MlyI GAGTC 1 cut(s) 1197
MmeI TCCRAC 1 cut(s) 625
Mox20I TGGCCA 1 cut(s) 1004
Mph1103I ATGCAT 1 cut(s) 1182
MscI TGGCCA 1 cut(s) 1004
MseI TTAA 7 cut(s) 68, 147, 228, 312, 648, 858, 1133
Msp20I TGGCCA 1 cut(s) 1004
MspCI CTTAAG 1 cut(s) 311
MspI CCGG 2 cut(s) 52, 120
MspR9I CCNGG 2 cut(s) 843, 1105
MunI CAATTG 1 cut(s) 818
MvaI CCWGG 2 cut(s) 843, 1105
MwoI GCNNNNNNNGC 5 cut(s) 979, 988, 1166, 1182, 1191
NdeI CATATG 1 cut(s) 1293
NdeII GATC 9 cut(s) 30, 90, 151, 368, 523, 547, 608, 940, 1350
NlaIV GGNNCC 6 cut(s) 103, 170, 599, 972, 1100, 1110
NmuCI GTSAC 2 cut(s) 763, 1140
NsiI ATGCAT 1 cut(s) 1182
NspI RCATGY 5 cut(s) 166, 409, 449, 814, 1180
NspV TTCGAA 1 cut(s) 574
PaeI GCATGC 2 cut(s) 814, 1180
PagI TCATGA 1 cut(s) 732
PasI CCCWGGG 1 cut(s) 1104
PciI ACATGT 3 cut(s) 162, 405, 445
PfeI GAWTC 5 cut(s) 127, 203, 319, 922, 1263
PflMI CCANNNNNTGG 1 cut(s) 347
PleI GAGTC 1 cut(s) 1196
PpsI GAGTC 1 cut(s) 1196
Ppu21I YACGTR 1 cut(s) 440
PpuMI RGGWCCY 1 cut(s) 477
PscI ACATGT 3 cut(s) 162, 405, 445
Psp5II RGGWCCY 1 cut(s) 477
Psp6I CCWGG 2 cut(s) 841, 1103
PspFI CCCAGC 3 cut(s) 62, 902, 1061
PspGI CCWGG 2 cut(s) 841, 1103
PspN4I GGNNCC 6 cut(s) 103, 170, 599, 972, 1100, 1110
PspPI GGNCC 6 cut(s) 168, 477, 598, 678, 971, 1247
PspPPI RGGWCCY 1 cut(s) 477
RsaI GTAC 3 cut(s) 693, 840, 1211
RsaNI GTAC 3 cut(s) 692, 839, 1210
SaqAI TTAA 7 cut(s) 68, 147, 228, 312, 648, 858, 1133
Sau3AI GATC 9 cut(s) 30, 90, 151, 368, 523, 547, 608, 940, 1350
Sau96I GGNCC 6 cut(s) 168, 477, 598, 678, 971, 1247
ScaI AGTACT 1 cut(s) 1211
SchI GAGTC 1 cut(s) 1197
ScrFI CCNGG 2 cut(s) 843, 1105
SexAI ACCWGGT 1 cut(s) 841
SfuI TTCGAA 1 cut(s) 574
SinI GGWCC 3 cut(s) 168, 477, 598
SmlI CTYRAG 2 cut(s) 311, 1205
SmoI CTYRAG 2 cut(s) 311, 1205
SphI GCATGC 2 cut(s) 814, 1180
SsiI CCGC 3 cut(s) 155, 1192, 1216
SspI AATATT 3 cut(s) 873, 1093, 1123
SspMI CTAG 2 cut(s) 1260, 1347
StyD4I CCNGG 2 cut(s) 841, 1103
StyI CCWWGG 1 cut(s) 1346
TaaI ACNGT 3 cut(s) 215, 355, 665
TaiI ACGT 1 cut(s) 442
TaqI TCGA 1 cut(s) 574
TatI WGTACW 1 cut(s) 1209
TfiI GAWTC 5 cut(s) 127, 203, 319, 922, 1263
Tru1I TTAA 7 cut(s) 68, 147, 228, 312, 648, 858, 1133
Tru9I TTAA 7 cut(s) 68, 147, 228, 312, 648, 858, 1133
TscAI CASTG 4 cut(s) 670, 870, 1083, 1389
TseFI GTSAC 2 cut(s) 763, 1140
Tsp45I GTSAC 2 cut(s) 763, 1140
TspDTI ATGAA 7 cut(s) 53, 460, 677, 721, 1250, 1310, 1347
TspGWI ACGGA 1 cut(s) 720
TspRI CASTG 4 cut(s) 670, 870, 1083, 1389
Van91I CCANNNNNTGG 1 cut(s) 347
Vha464I CTTAAG 1 cut(s) 311
VpaK11BI GGWCC 3 cut(s) 168, 477, 598
XapI RAATTY 3 cut(s) 467, 708, 1307
XbaI TCTAGA 1 cut(s) 1259
XceI RCATGY 5 cut(s) 166, 409, 449, 814, 1180
XmaJI CCTAGG 1 cut(s) 1346
XmiI GTMKAC 1 cut(s) 442
XspI CTAG 2 cut(s) 1260, 1347
ZrmI AGTACT 1 cut(s) 1211
Zsp2I ATGCAT 1 cut(s) 1182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.