RchiOBHm_Chr7g0203891

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0006790
Physical Location & Seq
Forward (+)
21481052 .. 21483932
2881 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18247

Sequence Viewer

Length: 960 bp
ATGAGAGAGTTATTGCAGAGTTTTGCTGTGATCATAATGAAAGAGTTTTTCCGGCTCTGTGCTGGGTTAAAAATTGACTGGAAAAGGTTGATCTTTGCTGGGGCCTTTATGACAACAGCCGGTGTGATTCTGCAAATGTTTCTACTTAATGATCCACTTGACATGTGGCCCCTCTCTCTACCCATTGCAAATGTGTCAGACGAATCGTTGAACAGTATCAGGAGCTTTAATCAGACCTTTAGTGAGGGAAGGGTCAAAAGATTGGAACTCATTTCTGCTGATGTTCCCATTGTTCCACCAGACTCTTCTCTTAAGTTGAATCTCTCTATTCCAGTTATGCCATATATTGGCACAGTTCCTACAGGGAGATCAAGAAGGAGAAAGAAAGAGGGAAATGTAGATAACATGTCAAAGGTCATACCTCCTCCTAACCCTCCACGTATACATGTGCCTTATCGTTTGCAGAAATTCATTTGGTCCTTGACACCCAATGAGGCACTTGTGTATGCGAAGAAAGAGATTGATCATGCCCCTGAAGTTATTGACGATCCTGATCTATATGCCCCTTTATTTCGAAATATGTCTGTTTTCAAAAGGAGCTATGAGTTGATGGAATTGATACTTAAAGTTTACATTTACAGTGATGGGTCAAGGCCCATATTTCATGTACCTCATCTCAATGGAATTTATGCTTCTGAAGGATGGTTCATGAGGTTGATGGAGGGAAACAGGCAATTTGTCACAAGAGACCCAGAAAAGGCTCACTTATTTTATCTTCCTTACAGCATGCGCCAATTGGAGTTGAAGCTTTATGTACCTGGTTCACATCAAATTAAACCACTGGCAATATTCCTCAGAGACTATGTGAACATGATTGCTGGGAAGTATCCTTTCTGGAATCGCACACATGGGACAGATCATTTTCTTGTTGCTTGCCATGACTGGGTTGGTAATCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

319

Amino Acids

36.91

Weight (kDa)

9.27

Isoelectric Point (pI)

43.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 208 - 315 6.7e-20 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 347
AccI GTMKAC 1 cut(s) 442
AclWI GGATC 2 cut(s) 146, 542
AcsI RAATTY 2 cut(s) 467, 684
AcuI CTGAAG 2 cut(s) 555, 717
AfaI GTAC 2 cut(s) 669, 816
AfiI CCNNNNNNNGG 3 cut(s) 347, 757, 943
AflII CTTAAG 1 cut(s) 311
AflIII ACRYGT 3 cut(s) 162, 405, 445
AgsI TTSAA 4 cut(s) 211, 319, 592, 805
AjnI CCWGG 1 cut(s) 817
AluBI AGCT 3 cut(s) 225, 600, 808
AluI AGCT 3 cut(s) 225, 600, 808
Alw26I GTCTC 2 cut(s) 741, 852
AlwI GGATC 2 cut(s) 146, 542
AoxI GGCC 3 cut(s) 102, 167, 653
ApoI RAATTY 2 cut(s) 467, 684
AspLEI GCGC 1 cut(s) 792
AspS9I GGNCC 4 cut(s) 102, 168, 477, 654
AsuII TTCGAA 1 cut(s) 574
AvaII GGWCC 1 cut(s) 477
BccI CCATC 4 cut(s) 604, 638, 696, 712
BciT130I CCWGG 1 cut(s) 819
BciVI GTATCC 1 cut(s) 897
BclI TGATCA 2 cut(s) 30, 523
BcoDI GTCTC 2 cut(s) 741, 852
BfmI CTRYAG 1 cut(s) 360
BfrI CTTAAG 1 cut(s) 311
BfuI GTATCC 1 cut(s) 897
Bme1390I CCNGG 1 cut(s) 819
Bme18I GGWCC 1 cut(s) 477
BmgT120I GGNCC 4 cut(s) 102, 168, 477, 654
BmiI GGNNCC 2 cut(s) 103, 170
BmrFI CCNGG 1 cut(s) 819
BmrI ACTGGG 1 cut(s) 952
BmuI ACTGGG 1 cut(s) 952
Bpu14I TTCGAA 1 cut(s) 574
BsaAI YACGTR 1 cut(s) 440
BsaBI GATNNNNATC 1 cut(s) 552
BsaI GGTCTC 1 cut(s) 741
Bsc4I CCNNNNNNNGG 3 cut(s) 347, 757, 943
Bse118I RCCGGY 1 cut(s) 119
Bse1I ACTGG 4 cut(s) 83, 332, 846, 947
Bse3DI GCAATG 1 cut(s) 183
Bse8I GATNNNNATC 1 cut(s) 552
BseBI CCWGG 1 cut(s) 819
BseGI GGATG 1 cut(s) 707
BseJI GATNNNNATC 1 cut(s) 552
BseLI CCNNNNNNNGG 3 cut(s) 347, 757, 943
BseMI GCAATG 1 cut(s) 183
BseMII CTCAG 1 cut(s) 868
BseNI ACTGG 4 cut(s) 83, 332, 846, 947
BseRI GAGGAG 1 cut(s) 414
BseYI CCCAGC 3 cut(s) 62, 98, 878
BshFI GGCC 3 cut(s) 104, 169, 655
BsiSI CCGG 2 cut(s) 52, 120
BslFI GGGAC 1 cut(s) 925
BslI CCNNNNNNNGG 3 cut(s) 347, 757, 943
BsmAI GTCTC 2 cut(s) 741, 852
BsmFI GGGAC 1 cut(s) 925
BsnI GGCC 3 cut(s) 104, 169, 655
Bso31I GGTCTC 1 cut(s) 741
Bsp119I TTCGAA 1 cut(s) 574
Bsp143I GATC 8 cut(s) 30, 90, 151, 368, 523, 547, 553, 916
BspANI GGCC 3 cut(s) 104, 169, 655
BspCNI CTCAG 1 cut(s) 867
BspHI TCATGA 1 cut(s) 708
BspLI GGNNCC 2 cut(s) 103, 170
BspPI GGATC 2 cut(s) 146, 542
BspT104I TTCGAA 1 cut(s) 574
BspTI CTTAAG 1 cut(s) 311
BspTNI GGTCTC 1 cut(s) 741
BsrDI GCAATG 1 cut(s) 183
BsrFI RCCGGY 1 cut(s) 119
BsrI ACTGG 4 cut(s) 83, 332, 846, 947
BssAI RCCGGY 1 cut(s) 119
BssMI GATC 8 cut(s) 30, 90, 151, 368, 523, 547, 553, 916
BssNAI GTATAC 1 cut(s) 443
Bst1107I GTATAC 1 cut(s) 443
Bst2UI CCWGG 1 cut(s) 819
Bst4CI ACNGT 3 cut(s) 215, 355, 641
Bst6I CTCTTC 1 cut(s) 310
BstAFI CTTAAG 1 cut(s) 311
BstBAI YACGTR 1 cut(s) 440
BstBI TTCGAA 1 cut(s) 574
BstC8I GCNNGC 2 cut(s) 788, 934
BstDEI CTNAG 1 cut(s) 854
BstF5I GGATG 1 cut(s) 707
BstHHI GCGC 1 cut(s) 792
BstKTI GATC 8 cut(s) 33, 93, 154, 371, 526, 550, 556, 919
BstMAI GTCTC 2 cut(s) 741, 852
BstMBI GATC 8 cut(s) 30, 90, 151, 368, 523, 547, 553, 916
BstNI CCWGG 1 cut(s) 819
BstNSI RCATGY 4 cut(s) 166, 409, 449, 790
BstSCI CCNGG 1 cut(s) 817
BstSFI CTRYAG 1 cut(s) 360
BstZ17I GTATAC 1 cut(s) 443
BsuI GTATCC 1 cut(s) 897
BsuRI GGCC 3 cut(s) 104, 169, 655
BtsCI GGATG 1 cut(s) 707
BtsIMutI CAGTG 2 cut(s) 646, 839
Cac8I GCNNGC 2 cut(s) 788, 934
CciI TCATGA 1 cut(s) 708
CfoI GCGC 1 cut(s) 792
Cfr10I RCCGGY 1 cut(s) 119
Cfr13I GGNCC 4 cut(s) 102, 168, 477, 654
CsiI ACCWGGT 1 cut(s) 817
Csp6I GTAC 2 cut(s) 668, 815
CviJI RGCY 9 cut(s) 55, 104, 119, 169, 225, 600, 655, 761, 808
CviKI_1 RGCY 9 cut(s) 55, 104, 119, 169, 225, 600, 655, 761, 808
CviQI GTAC 2 cut(s) 668, 815
DdeI CTNAG 1 cut(s) 854
DpnI GATC 8 cut(s) 32, 92, 153, 370, 525, 549, 555, 918
DpnII GATC 8 cut(s) 30, 90, 151, 368, 523, 547, 553, 916
Eam1104I CTCTTC 1 cut(s) 310
EarI CTCTTC 1 cut(s) 310
Eco31I GGTCTC 1 cut(s) 741
Eco47I GGWCC 1 cut(s) 477
Eco57I CTGAAG 2 cut(s) 555, 717
EcoO109I RGGNCCY 1 cut(s) 102
EcoRII CCWGG 1 cut(s) 817
FalI AAGNNNNNCTT 2 cut(s) 749, 781
FaqI GGGAC 1 cut(s) 925
FbaI TGATCA 2 cut(s) 30, 523
FblI GTMKAC 1 cut(s) 442
FokI GGATG 1 cut(s) 714
GlaI GCGC 1 cut(s) 791
GsaI CCCAGC 3 cut(s) 66, 102, 882
HaeIII GGCC 3 cut(s) 104, 169, 655
HapII CCGG 2 cut(s) 52, 120
HhaI GCGC 1 cut(s) 792
Hin6I GCGC 1 cut(s) 790
HinP1I GCGC 1 cut(s) 790
HindIII AAGCTT 1 cut(s) 806
HinfI GANTC 5 cut(s) 127, 203, 302, 319, 898
HpaII CCGG 2 cut(s) 52, 120
Hpy166II GTNNAC 4 cut(s) 443, 631, 824, 868
Hpy188I TCNGA 4 cut(s) 199, 234, 697, 857
Hpy188III TCNNGA 5 cut(s) 220, 372, 551, 709, 895
Hpy8I GTNNAC 4 cut(s) 443, 631, 824, 868
HpyAV CCTTC 3 cut(s) 243, 369, 692
HpyCH4III ACNGT 3 cut(s) 215, 355, 641
HpyCH4IV ACGT 1 cut(s) 439
HpyCH4V TGCA 4 cut(s) 16, 133, 188, 463
HpyF3I CTNAG 1 cut(s) 854
HpySE526I ACGT 1 cut(s) 439
HspAI GCGC 1 cut(s) 790
Ksp22I TGATCA 2 cut(s) 30, 523
Kzo9I GATC 8 cut(s) 30, 90, 151, 368, 523, 547, 553, 916
LmnI GCTCC 2 cut(s) 222, 597
MabI ACCWGGT 1 cut(s) 817
MaeII ACGT 1 cut(s) 439
MaeIII GTNAC 1 cut(s) 739
MalI GATC 8 cut(s) 32, 92, 153, 370, 525, 549, 555, 918
MboI GATC 8 cut(s) 30, 90, 151, 368, 523, 547, 553, 916
MboII GAAGA 3 cut(s) 297, 523, 767
MfeI CAATTG 1 cut(s) 794
MluCI AATT 7 cut(s) 72, 467, 614, 684, 734, 794, 831
MlyI GAGTC 1 cut(s) 296
MseI TTAA 6 cut(s) 68, 147, 228, 312, 624, 834
MslI CAYNNNNRTG 1 cut(s) 678
MspCI CTTAAG 1 cut(s) 311
MspI CCGG 2 cut(s) 52, 120
MspR9I CCNGG 1 cut(s) 819
MunI CAATTG 1 cut(s) 794
MvaI CCWGG 1 cut(s) 819
NdeII GATC 8 cut(s) 30, 90, 151, 368, 523, 547, 553, 916
NlaIV GGNNCC 2 cut(s) 103, 170
NmuCI GTSAC 1 cut(s) 739
NspI RCATGY 4 cut(s) 166, 409, 449, 790
NspV TTCGAA 1 cut(s) 574
PaeI GCATGC 1 cut(s) 790
PagI TCATGA 1 cut(s) 708
PciI ACATGT 3 cut(s) 162, 405, 445
PfeI GAWTC 4 cut(s) 127, 203, 319, 898
PflMI CCANNNNNTGG 1 cut(s) 347
PleI GAGTC 1 cut(s) 296
PpsI GAGTC 1 cut(s) 296
Ppu21I YACGTR 1 cut(s) 440
PscI ACATGT 3 cut(s) 162, 405, 445
Psp6I CCWGG 1 cut(s) 817
PspFI CCCAGC 3 cut(s) 62, 98, 878
PspGI CCWGG 1 cut(s) 817
PspN4I GGNNCC 2 cut(s) 103, 170
PspPI GGNCC 4 cut(s) 102, 168, 477, 654
RsaI GTAC 2 cut(s) 669, 816
RsaNI GTAC 2 cut(s) 668, 815
RseI CAYNNNNRTG 1 cut(s) 678
SaqAI TTAA 6 cut(s) 68, 147, 228, 312, 624, 834
Sau3AI GATC 8 cut(s) 30, 90, 151, 368, 523, 547, 553, 916
Sau96I GGNCC 4 cut(s) 102, 168, 477, 654
SchI GAGTC 1 cut(s) 296
ScrFI CCNGG 1 cut(s) 819
SexAI ACCWGGT 1 cut(s) 817
SfcI CTRYAG 1 cut(s) 360
SfuI TTCGAA 1 cut(s) 574
SinI GGWCC 1 cut(s) 477
SmiMI CAYNNNNRTG 1 cut(s) 678
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
SphI GCATGC 1 cut(s) 790
Sse9I AATT 7 cut(s) 72, 467, 614, 684, 734, 794, 831
SspI AATATT 1 cut(s) 849
StyD4I CCNGG 1 cut(s) 817
TaaI ACNGT 3 cut(s) 215, 355, 641
TaiI ACGT 1 cut(s) 442
TaqI TCGA 1 cut(s) 574
TasI AATT 7 cut(s) 72, 467, 614, 684, 734, 794, 831
TfiI GAWTC 4 cut(s) 127, 203, 319, 898
Tru1I TTAA 6 cut(s) 68, 147, 228, 312, 624, 834
Tru9I TTAA 6 cut(s) 68, 147, 228, 312, 624, 834
TscAI CASTG 2 cut(s) 646, 846
TseFI GTSAC 1 cut(s) 739
Tsp45I GTSAC 1 cut(s) 739
TspDTI ATGAA 4 cut(s) 53, 460, 653, 697
TspRI CASTG 2 cut(s) 646, 846
Van91I CCANNNNNTGG 1 cut(s) 347
Vha464I CTTAAG 1 cut(s) 311
VpaK11BI GGWCC 1 cut(s) 477
XapI RAATTY 2 cut(s) 467, 684
XceI RCATGY 4 cut(s) 166, 409, 449, 790
XcmI CCANNNNNNNNNTGG 2 cut(s) 162, 944
XmiI GTMKAC 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.