RLG00000003501

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0006790
Physical Location & Seq
Reverse (-)
49301481 .. 49304282
2802 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003501

Sequence Viewer

Length: 1596 bp
ATGAAAGAGTTTTTCCGGCTCTGTGCTGGGTTAAAAATTCACTGGAAAAGGTTGATCTTTGCTGGTGCCTTTATGACAACAGCCGGTGTGATTCTGCAAATGTTTCTACTTAATGATCCGCTTGACATGTGGTCCCTCTCTCTACCCATTGCAAATGTGTCAGACGAATCGTTGAACAGTATCAGGAGCTTTAATCAGACCTTTAGTGAGGGAAGGGTCAAAAGATTGCAACTCATTTCTGCTGATGTTCCCATTGTTCCACCAAACTCTTCTCTTAAGTTGAATCTCTCAGTTCCAGTTATGCCATATATTGGCACAGTTCCTACAGGGAGATCAAGAAGGAGAAAGAAAGGTGGAAATGTAGATAACATGTCAAAGGTCATACCTCCTCCTGACCCTCCACGTATACATGTGCCTTATCGTTTGCAGAAATTGATTTGGTCCTTGACACCCAATGAGGCACTTGTGTATGCGAAGAAAGAGATTGATCATGCCCCTGAAGTTATTGATGATCCTGATCTATATGCCCCTTTATTTCGAAATATGTCTGTTTTCAAAAGGAGCTATGAGTTGATGGAATTGATACTTAAAGTTTACATTTACAGTGATGGGTCAAGGCCCATATTTCATGTACCTCATCTCAACGGAATTTATGCTTCTGAAGGATGGTTCATGAGGTTGATGGAGGGAAACAGGCAATTTGTCACAAGAGACCCAGAAAAGGCTCACTTATTTTATCTTCCTTACAGCATGCGCCAATTGGAGTTGAAGCTTTATGTACCTGGTTCACATCAAATTAAACCACTGGCAATATTCCTCAGAGACTATGTGAACATGATTGCTGGGAAGTATCCTTTCTGGAATCGCACACGTGGGATAGATCATTTTCTTGTTGCTTGCCATGACTGGGGGCCTTACACGCTTACTCAGCACGAGGAACTGGCCAACAATACAATAAAAGCTCTATGCAACGCTGACACCTCAGAAGGAGTTTTTGTTGCTGGGAAGGATGTTTCACTGCCAGAAACTAATATTAGGAACCCCAGGGTTCCCCTTAGAAATATTGGTGGATTAAGAGTGTCACAGCGCCCACTCCTTGCCTTCTTTGCAGGACGCATGCATGGCAGAGTCCGCCCGATACTTCTCAAGTACTGGCGGGACAAACATGAGGACATGAAAATCTATGGGCCTCTGCCCTCTAGAATCTCCCGAAAGATGTCATATATCCAGCATATGAAGTCAAGTAAATTTTGTATTTGCCCAATGGGGTATGAGGTGAACAGCCCTAGGATCATTGAAGCCATATATTATGAGTGTGTCCCAGTGATAATTGCAGATAATTTCCCCCCTCCTTTGAGCGACGTGCTAGACTGGAGCAAATTTTCTGTTATTGTGGCTGAGAAGGATATCCCCAAGTTACGAGAGATTTTATTGGCTATTCCTATGAGAAGATACATGGCTATGCAAACAAATGTGAAAATGGTGAAAAGGCATTTTCTTTGGAATCGAAGGCCAATCAGATATGATTTATTCCATATGATTCTGCATTCCATCTGGTTAAGCAGATTGAGCCAGATTCAAATCCCAGAATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

532

Amino Acids

61.58

Weight (kDa)

9.72

Isoelectric Point (pI)

49.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 196 - 477 2.2e-64 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 65
AccB7I CCANNNNNTGG 1 cut(s) 311
AccI GTMKAC 1 cut(s) 406
AciI CCGC 3 cut(s) 119, 1132, 1156
AclWI GGATC 3 cut(s) 110, 506, 1298
AcoI YGGCCR 1 cut(s) 942
AcsI RAATTY 4 cut(s) 36, 648, 1247, 1379
AcuI CTGAAG 2 cut(s) 519, 681
AcvI CACGTG 1 cut(s) 872
AfaI GTAC 3 cut(s) 633, 780, 1151
AfiI CCNNNNNNNGG 3 cut(s) 311, 721, 907
AflII CTTAAG 1 cut(s) 275
AflIII ACRYGT 4 cut(s) 126, 369, 409, 869
AgsI TTSAA 6 cut(s) 175, 283, 556, 769, 1298, 1580
AhdI GACNNNNNGTC 1 cut(s) 130
AjiI CACGTC 1 cut(s) 1363
AjnI CCWGG 2 cut(s) 781, 1043
AluBI AGCT 4 cut(s) 189, 564, 772, 962
AluI AGCT 4 cut(s) 189, 564, 772, 962
Alw26I GTCTC 2 cut(s) 705, 816
AlwI GGATC 3 cut(s) 110, 506, 1298
AoxI GGCC 5 cut(s) 617, 911, 942, 1187, 1511
ApoI RAATTY 4 cut(s) 36, 648, 1247, 1379
AspA2I CCTAGG 1 cut(s) 1286
AspLEI GCGC 2 cut(s) 756, 1089
AspS9I GGNCC 5 cut(s) 132, 441, 618, 911, 1187
AsuHPI GGTGA 2 cut(s) 1288, 1495
AsuII TTCGAA 1 cut(s) 538
AvaII GGWCC 2 cut(s) 132, 441
AvrII CCTAGG 1 cut(s) 1286
BalI TGGCCA 1 cut(s) 944
BanI GGYRCC 1 cut(s) 65
BauI CACGAG 1 cut(s) 932
BbrPI CACGTG 1 cut(s) 872
BccI CCATC 5 cut(s) 568, 602, 660, 676, 1559
BciT130I CCWGG 2 cut(s) 783, 1045
BciVI GTATCC 1 cut(s) 861
BclI TGATCA 1 cut(s) 487
BcoDI GTCTC 2 cut(s) 705, 816
BfaI CTAG 4 cut(s) 1200, 1287, 1367, 1594
BfmI CTRYAG 1 cut(s) 324
BfoI RGCGCY 1 cut(s) 1090
BfrI CTTAAG 1 cut(s) 275
BfuI GTATCC 1 cut(s) 861
BlnI CCTAGG 1 cut(s) 1286
BmcAI AGTACT 1 cut(s) 1151
Bme1390I CCNGG 2 cut(s) 783, 1045
Bme18I GGWCC 2 cut(s) 132, 441
BmeRI GACNNNNNGTC 1 cut(s) 130
BmgBI CACGTC 1 cut(s) 1363
BmgT120I GGNCC 5 cut(s) 132, 441, 618, 911, 1187
BmiI GGNNCC 5 cut(s) 67, 134, 912, 1040, 1050
BmrFI CCNGG 2 cut(s) 783, 1045
BmrI ACTGGG 2 cut(s) 916, 1316
BmuI ACTGGG 2 cut(s) 916, 1316
BpmI CTGGAG 1 cut(s) 1393
Bpu14I TTCGAA 1 cut(s) 538
BpuEI CTTGAG 1 cut(s) 1130
BsaAI YACGTR 2 cut(s) 404, 872
BsaBI GATNNNNATC 2 cut(s) 516, 1580
BsaI GGTCTC 1 cut(s) 705
BsaJI CCNNGG 3 cut(s) 1043, 1044, 1286
BsaXI ACNNNNNCTCC 2 cut(s) 981, 1011
Bsc4I CCNNNNNNNGG 3 cut(s) 311, 721, 907
Bse118I RCCGGY 1 cut(s) 83
Bse1I ACTGG 8 cut(s) 47, 296, 810, 911, 945, 1157, 1322, 1376
Bse3DI GCAATG 1 cut(s) 147
Bse8I GATNNNNATC 2 cut(s) 516, 1580
BseBI CCWGG 2 cut(s) 783, 1045
BseDI CCNNGG 3 cut(s) 1043, 1044, 1286
BseGI GGATG 2 cut(s) 671, 1015
BseJI GATNNNNATC 2 cut(s) 516, 1580
BseLI CCNNNNNNNGG 3 cut(s) 311, 721, 907
BseMI GCAATG 1 cut(s) 147
BseMII CTCAG 5 cut(s) 303, 832, 941, 996, 1389
BseNI ACTGG 8 cut(s) 47, 296, 810, 911, 945, 1157, 1322, 1376
BseRI GAGGAG 1 cut(s) 378
BseYI CCCAGC 3 cut(s) 26, 842, 1001
BshFI GGCC 5 cut(s) 619, 913, 944, 1189, 1513
BshNI GGYRCC 1 cut(s) 65
BsiSI CCGG 2 cut(s) 16, 84
BslFI GGGAC 3 cut(s) 118, 1172, 1304
BslI CCNNNNNNNGG 3 cut(s) 311, 721, 907
BsmAI GTCTC 2 cut(s) 705, 816
BsmFI GGGAC 3 cut(s) 118, 1172, 1304
BsmI GAATGC 1 cut(s) 1546
BsnI GGCC 5 cut(s) 619, 913, 944, 1189, 1513
Bso31I GGTCTC 1 cut(s) 705
Bsp119I TTCGAA 1 cut(s) 538
Bsp143I GATC 8 cut(s) 54, 115, 332, 487, 511, 517, 880, 1290
BspACI CCGC 3 cut(s) 119, 1132, 1156
BspANI GGCC 5 cut(s) 619, 913, 944, 1189, 1513
BspCNI CTCAG 5 cut(s) 302, 831, 940, 995, 1390
BspHI TCATGA 1 cut(s) 672
BspLI GGNNCC 5 cut(s) 67, 134, 912, 1040, 1050
BspPI GGATC 3 cut(s) 110, 506, 1298
BspT104I TTCGAA 1 cut(s) 538
BspT107I GGYRCC 1 cut(s) 65
BspTI CTTAAG 1 cut(s) 275
BspTNI GGTCTC 1 cut(s) 705
BsrDI GCAATG 1 cut(s) 147
BsrFI RCCGGY 1 cut(s) 83
BsrI ACTGG 8 cut(s) 47, 296, 810, 911, 945, 1157, 1322, 1376
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 3 cut(s) 1043, 1044, 1286
BssMI GATC 8 cut(s) 54, 115, 332, 487, 511, 517, 880, 1290
BssNAI GTATAC 1 cut(s) 407
BssSI CACGAG 1 cut(s) 932
BssT1I CCWWGG 1 cut(s) 1286
Bst1107I GTATAC 1 cut(s) 407
Bst2BI CACGAG 1 cut(s) 932
Bst2UI CCWGG 2 cut(s) 783, 1045
Bst4CI ACNGT 3 cut(s) 179, 319, 605
Bst6I CTCTTC 1 cut(s) 274
BstAFI CTTAAG 1 cut(s) 275
BstBAI YACGTR 2 cut(s) 404, 872
BstBI TTCGAA 1 cut(s) 538
BstC8I GCNNGC 3 cut(s) 752, 898, 1118
BstDEI CTNAG 6 cut(s) 289, 818, 927, 982, 1055, 1398
BstF5I GGATG 2 cut(s) 671, 1015
BstH2I RGCGCY 1 cut(s) 1090
BstHHI GCGC 2 cut(s) 756, 1089
BstKTI GATC 8 cut(s) 57, 118, 335, 490, 514, 520, 883, 1293
BstMAI GTCTC 2 cut(s) 705, 816
BstMBI GATC 8 cut(s) 54, 115, 332, 487, 511, 517, 880, 1290
BstMWI GCNNNNNNNGC 6 cut(s) 919, 928, 1106, 1122, 1131, 1569
BstNI CCWGG 2 cut(s) 783, 1045
BstNSI RCATGY 5 cut(s) 130, 373, 413, 754, 1120
BstSCI CCNGG 2 cut(s) 781, 1043
BstSFI CTRYAG 1 cut(s) 324
BstZ17I GTATAC 1 cut(s) 407
BsuI GTATCC 1 cut(s) 861
BsuRI GGCC 5 cut(s) 619, 913, 944, 1189, 1513
BtrI CACGTC 1 cut(s) 1363
BtsCI GGATG 2 cut(s) 671, 1015
BtsI GCAGTG 1 cut(s) 1016
BtsIMutI CAGTG 5 cut(s) 40, 610, 803, 1016, 1329
Cac8I GCNNGC 3 cut(s) 752, 898, 1118
CciI TCATGA 1 cut(s) 672
CfoI GCGC 2 cut(s) 756, 1089
Cfr10I RCCGGY 1 cut(s) 83
Cfr13I GGNCC 5 cut(s) 132, 441, 618, 911, 1187
CseI GACGC 1 cut(s) 1122
CsiI ACCWGGT 1 cut(s) 781
Csp6I GTAC 3 cut(s) 632, 779, 1150
CviQI GTAC 3 cut(s) 632, 779, 1150
DdeI CTNAG 6 cut(s) 289, 818, 927, 982, 1055, 1398
DpnI GATC 8 cut(s) 56, 117, 334, 489, 513, 519, 882, 1292
DpnII GATC 8 cut(s) 54, 115, 332, 487, 511, 517, 880, 1290
DriI GACNNNNNGTC 1 cut(s) 130
EaeI YGGCCR 1 cut(s) 942
Eam1104I CTCTTC 1 cut(s) 274
Eam1105I GACNNNNNGTC 1 cut(s) 130
EarI CTCTTC 1 cut(s) 274
EciI GGCGGA 1 cut(s) 1121
Eco130I CCWWGG 1 cut(s) 1286
Eco31I GGTCTC 1 cut(s) 705
Eco32I GATATC 1 cut(s) 1408
Eco47I GGWCC 2 cut(s) 132, 441
Eco57I CTGAAG 2 cut(s) 519, 681
Eco72I CACGTG 1 cut(s) 872
EcoO109I RGGNCCY 1 cut(s) 911
EcoRII CCWGG 2 cut(s) 781, 1043
EcoRV GATATC 1 cut(s) 1408
EcoT14I CCWWGG 1 cut(s) 1286
EcoT22I ATGCAT 1 cut(s) 1122
ErhI CCWWGG 1 cut(s) 1286
FalI AAGNNNNNCTT 2 cut(s) 713, 745
FaqI GGGAC 3 cut(s) 118, 1172, 1304
FauI CCCGC 1 cut(s) 1149
FauNDI CATATG 2 cut(s) 1233, 1536
FbaI TGATCA 1 cut(s) 487
FblI GTMKAC 1 cut(s) 406
FokI GGATG 2 cut(s) 678, 1022
FspBI CTAG 4 cut(s) 1200, 1287, 1367, 1594
GlaI GCGC 2 cut(s) 755, 1088
GsaI CCCAGC 3 cut(s) 30, 846, 1005
GsuI CTGGAG 1 cut(s) 1393
HaeII RGCGCY 1 cut(s) 1090
HaeIII GGCC 5 cut(s) 619, 913, 944, 1189, 1513
HapII CCGG 2 cut(s) 16, 84
HgaI GACGC 1 cut(s) 1122
HhaI GCGC 2 cut(s) 756, 1089
Hin6I GCGC 2 cut(s) 754, 1087
HinP1I GCGC 2 cut(s) 754, 1087
HindIII AAGCTT 1 cut(s) 770
HpaII CCGG 2 cut(s) 16, 84
HphI GGTGA 2 cut(s) 1288, 1495
Hpy166II GTNNAC 5 cut(s) 407, 595, 788, 832, 1279
Hpy188I TCNGA 6 cut(s) 163, 198, 661, 821, 985, 1520
Hpy188III TCNNGA 8 cut(s) 184, 336, 392, 515, 673, 859, 1200, 1209
Hpy8I GTNNAC 5 cut(s) 407, 595, 788, 832, 1279
Hpy99I CGWCG 1 cut(s) 1364
HpyAV CCTTC 8 cut(s) 207, 333, 656, 980, 1000, 1111, 1396, 1503
HpyCH4III ACNGT 3 cut(s) 179, 319, 605
HpyCH4IV ACGT 3 cut(s) 403, 871, 1362
HpyF10VI GCNNNNNNNGC 6 cut(s) 919, 928, 1106, 1122, 1131, 1569
HpyF3I CTNAG 6 cut(s) 289, 818, 927, 982, 1055, 1398
HpySE526I ACGT 3 cut(s) 403, 871, 1362
HspAI GCGC 2 cut(s) 754, 1087
Ksp22I TGATCA 1 cut(s) 487
Kzo9I GATC 8 cut(s) 54, 115, 332, 487, 511, 517, 880, 1290
LmnI GCTCC 3 cut(s) 186, 561, 1374
MabI ACCWGGT 1 cut(s) 781
MaeI CTAG 4 cut(s) 1200, 1287, 1367, 1594
MaeII ACGT 3 cut(s) 403, 871, 1362
MaeIII GTNAC 3 cut(s) 703, 1080, 1416
MalI GATC 8 cut(s) 56, 117, 334, 489, 513, 519, 882, 1292
MboI GATC 8 cut(s) 54, 115, 332, 487, 511, 517, 880, 1290
MboII GAAGA 4 cut(s) 261, 487, 731, 1461
MfeI CAATTG 1 cut(s) 758
MlsI TGGCCA 1 cut(s) 944
MluNI TGGCCA 1 cut(s) 944
MlyI GAGTC 1 cut(s) 1137
Mox20I TGGCCA 1 cut(s) 944
Mph1103I ATGCAT 1 cut(s) 1122
MscI TGGCCA 1 cut(s) 944
MseI TTAA 8 cut(s) 32, 111, 192, 276, 588, 798, 1073, 1559
MslI CAYNNNNRTG 1 cut(s) 1460
Msp20I TGGCCA 1 cut(s) 944
MspCI CTTAAG 1 cut(s) 275
MspI CCGG 2 cut(s) 16, 84
MspR9I CCNGG 2 cut(s) 783, 1045
MunI CAATTG 1 cut(s) 758
Mva1269I GAATGC 1 cut(s) 1546
MvaI CCWGG 2 cut(s) 783, 1045
MwoI GCNNNNNNNGC 6 cut(s) 919, 928, 1106, 1122, 1131, 1569
NdeI CATATG 2 cut(s) 1233, 1536
NdeII GATC 8 cut(s) 54, 115, 332, 487, 511, 517, 880, 1290
NlaIV GGNNCC 5 cut(s) 67, 134, 912, 1040, 1050
NmuCI GTSAC 2 cut(s) 703, 1080
NsiI ATGCAT 1 cut(s) 1122
NspI RCATGY 5 cut(s) 130, 373, 413, 754, 1120
NspV TTCGAA 1 cut(s) 538
PaeI GCATGC 2 cut(s) 754, 1120
PagI TCATGA 1 cut(s) 672
PasI CCCWGGG 1 cut(s) 1044
PciI ACATGT 3 cut(s) 126, 369, 409
PctI GAATGC 1 cut(s) 1546
PfeI GAWTC 9 cut(s) 91, 167, 283, 862, 1203, 1504, 1540, 1576, 1589
PflMI CCANNNNNTGG 1 cut(s) 311
PleI GAGTC 1 cut(s) 1136
PmaCI CACGTG 1 cut(s) 872
PmlI CACGTG 1 cut(s) 872
PpsI GAGTC 1 cut(s) 1136
Ppu21I YACGTR 2 cut(s) 404, 872
PscI ACATGT 3 cut(s) 126, 369, 409
Psp6I CCWGG 2 cut(s) 781, 1043
PspCI CACGTG 1 cut(s) 872
PspFI CCCAGC 3 cut(s) 26, 842, 1001
PspGI CCWGG 2 cut(s) 781, 1043
PspN4I GGNNCC 5 cut(s) 67, 134, 912, 1040, 1050
PspPI GGNCC 5 cut(s) 132, 441, 618, 911, 1187
RsaI GTAC 3 cut(s) 633, 780, 1151
RsaNI GTAC 3 cut(s) 632, 779, 1150
RseI CAYNNNNRTG 1 cut(s) 1460
SaqAI TTAA 8 cut(s) 32, 111, 192, 276, 588, 798, 1073, 1559
Sau3AI GATC 8 cut(s) 54, 115, 332, 487, 511, 517, 880, 1290
Sau96I GGNCC 5 cut(s) 132, 441, 618, 911, 1187
ScaI AGTACT 1 cut(s) 1151
SchI GAGTC 1 cut(s) 1137
ScrFI CCNGG 2 cut(s) 783, 1045
SexAI ACCWGGT 1 cut(s) 781
SfcI CTRYAG 1 cut(s) 324
SfuI TTCGAA 1 cut(s) 538
SinI GGWCC 2 cut(s) 132, 441
SmiMI CAYNNNNRTG 1 cut(s) 1460
SmlI CTYRAG 2 cut(s) 275, 1145
SmoI CTYRAG 2 cut(s) 275, 1145
SphI GCATGC 2 cut(s) 754, 1120
SsiI CCGC 3 cut(s) 119, 1132, 1156
SspI AATATT 3 cut(s) 813, 1033, 1063
SspMI CTAG 4 cut(s) 1200, 1287, 1367, 1594
StyD4I CCNGG 2 cut(s) 781, 1043
StyI CCWWGG 1 cut(s) 1286
TaaI ACNGT 3 cut(s) 179, 319, 605
TaiI ACGT 3 cut(s) 406, 874, 1365
TaqI TCGA 2 cut(s) 538, 1507
TatI WGTACW 1 cut(s) 1149
TfiI GAWTC 9 cut(s) 91, 167, 283, 862, 1203, 1504, 1540, 1576, 1589
Tru1I TTAA 8 cut(s) 32, 111, 192, 276, 588, 798, 1073, 1559
Tru9I TTAA 8 cut(s) 32, 111, 192, 276, 588, 798, 1073, 1559
TscAI CASTG 5 cut(s) 47, 610, 810, 1023, 1329
TseFI GTSAC 2 cut(s) 703, 1080
Tsp45I GTSAC 2 cut(s) 703, 1080
TspDTI ATGAA 5 cut(s) 17, 617, 661, 1190, 1250
TspGWI ACGGA 1 cut(s) 660
TspRI CASTG 5 cut(s) 47, 610, 810, 1023, 1329
Van91I CCANNNNNTGG 1 cut(s) 311
Vha464I CTTAAG 1 cut(s) 275
VpaK11BI GGWCC 2 cut(s) 132, 441
XapI RAATTY 4 cut(s) 36, 648, 1247, 1379
XbaI TCTAGA 1 cut(s) 1199
XceI RCATGY 5 cut(s) 130, 373, 413, 754, 1120
XmaJI CCTAGG 1 cut(s) 1286
XmiI GTMKAC 1 cut(s) 406
XspI CTAG 4 cut(s) 1200, 1287, 1367, 1594
ZrmI AGTACT 1 cut(s) 1151
Zsp2I ATGCAT 1 cut(s) 1122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.