RchiOBHm_Chr7g0203901

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0006790
Physical Location & Seq
Forward (+)
21483934 .. 21486072
2139 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18248

Sequence Viewer

Length: 789 bp
ATGTCTTTGAATATTATGTGTGGATTAGTGATTTTGAAATTAAATATCATTCAGCTTATAGCTGTTTCTTATGAAGATCAACATTTACAAGGTCATGCAGCTGGGCCTTACACAGTTACTCAGCACGAGGAACTGGCCAACAATACAATAAAAGCTCTATGCAACGCTGACACCTCAGAAAGAGTTTTTGTTGCTGGGAAGGATGTTTCACTGCCAGAAACTAATATTAGGAACCCCAGGGTTCCCCTTAGAAATATTGGTGGATTAAGAGTGTCACAGCGCCCACTCCTTGCCTTCTTTGCAGGACGCATGCATGGCAGAGTCCGCCCGATACTTCTCAAGTACTGGCGGGACAAACATGAGGACATGAAAATCTATGGGCCTCTGCCCTCTAGAATCTCCCGAAAGATGTCATATATCCAGCATATGAAGTCAAGTAAATTTTGTATTTGCCCAATGGGGTATGAAGTGAACAGCCCTAGGATCATTGAAGCCATATATTATGAGTGTGTCCCAGTGATAATTGCAGATAATTTCCCCCCTCCTTTGAGCGACGTGCTAGACTGGAGCAAATTTTCTGTTATTGTGGCTGAGAAGGATATCCCCAAGTTACGAGAGATTTTATCGGCTATTCCTATGAGAAGATACATGGCAATGCAAACAAATGTGAAAATGGTGAAAAGGCATTTTCTTTGGAATCGAAGGCCAATCAGATATGATTTATTCCATATGATTCTGCATTCCATCTGGTTAAGCAGATTGAGCCAGATTCAAATCCCAGAATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

262

Amino Acids

30.34

Weight (kDa)

9.68

Isoelectric Point (pI)

56.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 33 - 210 1.6e-39 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 325, 349
AclWI GGATC 1 cut(s) 491
AcoI YGGCCR 1 cut(s) 135
AcsI RAATTY 2 cut(s) 440, 572
AfaI GTAC 1 cut(s) 344
AgsI TTSAA 4 cut(s) 10, 37, 491, 773
AjiI CACGTC 1 cut(s) 556
AjnI CCWGG 1 cut(s) 236
AluBI AGCT 4 cut(s) 55, 62, 101, 155
AluI AGCT 4 cut(s) 55, 62, 101, 155
AlwI GGATC 1 cut(s) 491
AoxI GGCC 4 cut(s) 104, 135, 380, 704
ApeKI GCWGC 1 cut(s) 98
ApoI RAATTY 2 cut(s) 440, 572
AspA2I CCTAGG 1 cut(s) 479
AspLEI GCGC 1 cut(s) 282
AspS9I GGNCC 2 cut(s) 104, 380
AsuHPI GGTGA 1 cut(s) 688
AvrII CCTAGG 1 cut(s) 479
BalI TGGCCA 1 cut(s) 137
BauI CACGAG 1 cut(s) 125
BbvI GCAGC 1 cut(s) 110
BccI CCATC 1 cut(s) 752
BciT130I CCWGG 1 cut(s) 238
BfaI CTAG 4 cut(s) 393, 480, 560, 787
BfoI RGCGCY 1 cut(s) 283
BisI GCNGC 1 cut(s) 99
BlnI CCTAGG 1 cut(s) 479
BlsI GCNGC 1 cut(s) 100
BmcAI AGTACT 1 cut(s) 344
Bme1390I CCNGG 1 cut(s) 238
BmgBI CACGTC 1 cut(s) 556
BmgT120I GGNCC 2 cut(s) 104, 380
BmiI GGNNCC 2 cut(s) 233, 243
BmrFI CCNGG 1 cut(s) 238
BmrI ACTGGG 1 cut(s) 509
BmuI ACTGGG 1 cut(s) 509
BpmI CTGGAG 1 cut(s) 586
BpuEI CTTGAG 1 cut(s) 323
BsaBI GATNNNNATC 1 cut(s) 773
BsaJI CCNNGG 3 cut(s) 236, 237, 479
Bse1I ACTGG 4 cut(s) 138, 350, 515, 569
Bse3DI GCAATG 1 cut(s) 660
Bse8I GATNNNNATC 1 cut(s) 773
BseBI CCWGG 1 cut(s) 238
BseDI CCNNGG 3 cut(s) 236, 237, 479
BseGI GGATG 1 cut(s) 208
BseJI GATNNNNATC 1 cut(s) 773
BseMI GCAATG 1 cut(s) 660
BseMII CTCAG 3 cut(s) 134, 189, 582
BseNI ACTGG 4 cut(s) 138, 350, 515, 569
BseXI GCAGC 1 cut(s) 110
BseYI CCCAGC 2 cut(s) 101, 194
BshFI GGCC 4 cut(s) 106, 137, 382, 706
BslFI GGGAC 2 cut(s) 365, 497
BsmFI GGGAC 2 cut(s) 365, 497
BsmI GAATGC 1 cut(s) 739
BsnI GGCC 4 cut(s) 106, 137, 382, 706
Bsp143I GATC 2 cut(s) 76, 483
BspACI CCGC 2 cut(s) 325, 349
BspANI GGCC 4 cut(s) 106, 137, 382, 706
BspCNI CTCAG 3 cut(s) 133, 188, 583
BspLI GGNNCC 2 cut(s) 233, 243
BspPI GGATC 1 cut(s) 491
BsrDI GCAATG 1 cut(s) 660
BsrI ACTGG 4 cut(s) 138, 350, 515, 569
BssECI CCNNGG 3 cut(s) 236, 237, 479
BssMI GATC 2 cut(s) 76, 483
BssSI CACGAG 1 cut(s) 125
BssT1I CCWWGG 1 cut(s) 479
Bst2BI CACGAG 1 cut(s) 125
Bst2UI CCWGG 1 cut(s) 238
Bst4CI ACNGT 1 cut(s) 115
BstC8I GCNNGC 1 cut(s) 311
BstDEI CTNAG 4 cut(s) 120, 175, 248, 591
BstF5I GGATG 1 cut(s) 208
BstH2I RGCGCY 1 cut(s) 283
BstHHI GCGC 1 cut(s) 282
BstKTI GATC 2 cut(s) 79, 486
BstMBI GATC 2 cut(s) 76, 483
BstMWI GCNNNNNNNGC 4 cut(s) 299, 315, 324, 762
BstNI CCWGG 1 cut(s) 238
BstNSI RCATGY 1 cut(s) 313
BstSCI CCNGG 1 cut(s) 236
BstV1I GCAGC 1 cut(s) 110
BsuRI GGCC 4 cut(s) 106, 137, 382, 706
BtrI CACGTC 1 cut(s) 556
BtsCI GGATG 1 cut(s) 208
BtsI GCAGTG 1 cut(s) 209
BtsIMutI CAGTG 2 cut(s) 209, 522
Cac8I GCNNGC 1 cut(s) 311
CfoI GCGC 1 cut(s) 282
Cfr13I GGNCC 2 cut(s) 104, 380
CseI GACGC 1 cut(s) 315
Csp6I GTAC 1 cut(s) 343
CviAII CATG 6 cut(s) 95, 310, 314, 359, 367, 649
CviQI GTAC 1 cut(s) 343
DdeI CTNAG 4 cut(s) 120, 175, 248, 591
DpnI GATC 2 cut(s) 78, 485
DpnII GATC 2 cut(s) 76, 483
EaeI YGGCCR 1 cut(s) 135
EciI GGCGGA 1 cut(s) 314
Eco130I CCWWGG 1 cut(s) 479
Eco32I GATATC 1 cut(s) 601
EcoRII CCWGG 1 cut(s) 236
EcoRV GATATC 1 cut(s) 601
EcoT14I CCWWGG 1 cut(s) 479
EcoT22I ATGCAT 1 cut(s) 315
ErhI CCWWGG 1 cut(s) 479
FaeI CATG 6 cut(s) 98, 313, 317, 362, 370, 652
FaqI GGGAC 2 cut(s) 365, 497
FatI CATG 6 cut(s) 94, 309, 313, 358, 366, 648
FauI CCCGC 1 cut(s) 342
FauNDI CATATG 2 cut(s) 426, 729
Fnu4HI GCNGC 1 cut(s) 99
FokI GGATG 1 cut(s) 215
Fsp4HI GCNGC 1 cut(s) 99
FspBI CTAG 4 cut(s) 393, 480, 560, 787
GlaI GCGC 1 cut(s) 281
GluI GCNGC 1 cut(s) 99
GsaI CCCAGC 2 cut(s) 105, 198
GsuI CTGGAG 1 cut(s) 586
HaeII RGCGCY 1 cut(s) 283
HaeIII GGCC 4 cut(s) 106, 137, 382, 706
HgaI GACGC 1 cut(s) 315
HhaI GCGC 1 cut(s) 282
Hin1II CATG 6 cut(s) 98, 313, 317, 362, 370, 652
Hin6I GCGC 1 cut(s) 280
HinP1I GCGC 1 cut(s) 280
HinfI GANTC 6 cut(s) 321, 396, 697, 733, 769, 782
HphI GGTGA 1 cut(s) 688
Hpy166II GTNNAC 1 cut(s) 472
Hpy188I TCNGA 2 cut(s) 178, 713
Hpy188III TCNNGA 2 cut(s) 393, 402
Hpy8I GTNNAC 1 cut(s) 472
Hpy99I CGWCG 1 cut(s) 557
HpyAV CCTTC 4 cut(s) 193, 304, 589, 696
HpyCH4III ACNGT 1 cut(s) 115
HpyCH4IV ACGT 1 cut(s) 555
HpyCH4V TGCA 7 cut(s) 98, 162, 302, 313, 527, 658, 739
HpyF10VI GCNNNNNNNGC 4 cut(s) 299, 315, 324, 762
HpyF3I CTNAG 4 cut(s) 120, 175, 248, 591
HpySE526I ACGT 1 cut(s) 555
Hsp92II CATG 6 cut(s) 98, 313, 317, 362, 370, 652
HspAI GCGC 1 cut(s) 280
Kzo9I GATC 2 cut(s) 76, 483
LmnI GCTCC 1 cut(s) 567
Lsp1109I GCAGC 1 cut(s) 110
MaeI CTAG 4 cut(s) 393, 480, 560, 787
MaeII ACGT 1 cut(s) 555
MaeIII GTNAC 3 cut(s) 115, 273, 609
MalI GATC 2 cut(s) 78, 485
MboI GATC 2 cut(s) 76, 483
MboII GAAGA 2 cut(s) 86, 654
MlsI TGGCCA 1 cut(s) 137
MluCI AATT 5 cut(s) 38, 440, 522, 532, 572
MluNI TGGCCA 1 cut(s) 137
MlyI GAGTC 1 cut(s) 330
MnlI CCTC 6 cut(s) 121, 184, 355, 393, 400, 552
Mox20I TGGCCA 1 cut(s) 137
Mph1103I ATGCAT 1 cut(s) 315
MscI TGGCCA 1 cut(s) 137
MseI TTAA 3 cut(s) 41, 266, 752
MslI CAYNNNNRTG 1 cut(s) 653
Msp20I TGGCCA 1 cut(s) 137
MspA1I CMGCKG 1 cut(s) 101
MspR9I CCNGG 1 cut(s) 238
Mva1269I GAATGC 1 cut(s) 739
MvaI CCWGG 1 cut(s) 238
MwoI GCNNNNNNNGC 4 cut(s) 299, 315, 324, 762
NdeI CATATG 2 cut(s) 426, 729
NdeII GATC 2 cut(s) 76, 483
NlaIII CATG 6 cut(s) 98, 313, 317, 362, 370, 652
NlaIV GGNNCC 2 cut(s) 233, 243
NmuCI GTSAC 1 cut(s) 273
NsiI ATGCAT 1 cut(s) 315
NspI RCATGY 1 cut(s) 313
PaeI GCATGC 1 cut(s) 313
PasI CCCWGGG 1 cut(s) 237
PctI GAATGC 1 cut(s) 739
PfeI GAWTC 5 cut(s) 396, 697, 733, 769, 782
PkrI GCNGC 1 cut(s) 100
PleI GAGTC 1 cut(s) 329
PpsI GAGTC 1 cut(s) 329
Psp6I CCWGG 1 cut(s) 236
PspFI CCCAGC 2 cut(s) 101, 194
PspGI CCWGG 1 cut(s) 236
PspN4I GGNNCC 2 cut(s) 233, 243
PspPI GGNCC 2 cut(s) 104, 380
PvuII CAGCTG 1 cut(s) 101
RsaI GTAC 1 cut(s) 344
RsaNI GTAC 1 cut(s) 343
RseI CAYNNNNRTG 1 cut(s) 653
SaqAI TTAA 3 cut(s) 41, 266, 752
SatI GCNGC 1 cut(s) 99
Sau3AI GATC 2 cut(s) 76, 483
Sau96I GGNCC 2 cut(s) 104, 380
ScaI AGTACT 1 cut(s) 344
SchI GAGTC 1 cut(s) 330
ScrFI CCNGG 1 cut(s) 238
SetI ASST 7 cut(s) 57, 64, 94, 103, 157, 176, 558
SmiMI CAYNNNNRTG 1 cut(s) 653
SmlI CTYRAG 1 cut(s) 338
SmoI CTYRAG 1 cut(s) 338
SphI GCATGC 1 cut(s) 313
Sse9I AATT 5 cut(s) 38, 440, 522, 532, 572
SsiI CCGC 2 cut(s) 325, 349
SspI AATATT 3 cut(s) 13, 226, 256
SspMI CTAG 4 cut(s) 393, 480, 560, 787
StyD4I CCNGG 1 cut(s) 236
StyI CCWWGG 1 cut(s) 479
TaaI ACNGT 1 cut(s) 115
TaiI ACGT 1 cut(s) 558
TaqI TCGA 1 cut(s) 700
TasI AATT 5 cut(s) 38, 440, 522, 532, 572
TatI WGTACW 1 cut(s) 342
TfiI GAWTC 5 cut(s) 396, 697, 733, 769, 782
Tru1I TTAA 3 cut(s) 41, 266, 752
Tru9I TTAA 3 cut(s) 41, 266, 752
TscAI CASTG 2 cut(s) 216, 522
TseFI GTSAC 1 cut(s) 273
TseI GCWGC 1 cut(s) 98
Tsp45I GTSAC 1 cut(s) 273
TspDTI ATGAA 4 cut(s) 87, 383, 443, 480
TspRI CASTG 2 cut(s) 216, 522
XapI RAATTY 2 cut(s) 440, 572
XbaI TCTAGA 1 cut(s) 392
XceI RCATGY 1 cut(s) 313
XmaJI CCTAGG 1 cut(s) 479
XspI CTAG 4 cut(s) 393, 480, 560, 787
ZrmI AGTACT 1 cut(s) 344
Zsp2I ATGCAT 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.