RLG00000003250

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0006790
Physical Location & Seq
Forward (+)
46110148 .. 46115398
5251 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003250

Sequence Viewer

Length: 1485 bp
ATGTTGGATGGATTCTTACTTCTTTTTCCAGTAGTTTCTGCAGTCCTTCCTTGTAGGAATACCTTGTTACAGCATCTAAGAACCCGATATTGTATGTCTTCTTCAGTTCCCCTAGACTCCAGAGAATTTAATGTCAAACCAACCCAGTTGGTTAACTTCTCTAGGAGTAGCACATATTTGAGTACAAATGTAGAAGAAACTGTTGGGACCAGGGTTTTAACGCTAATACCAGGAGGACTAATTGAACTTCTTGTTGCCAAACAAGAAGCAGATCCTGAGGATTTAAGAGAAGGTCAGAAACGGATGATGGCATTGTTCCATGTTTATACTTTCGATGAGAATACTCCACTTGTTGATGATCCAGAGTACATCTTTGCATTAGGTGAAACAAAATTCAAGGGACTGCAAAGCGGAGATAAGTATGCGAAGAAAGAGATTGATCATGCCCCTGAAGTTATTGATGATCCTGATCTATATGCCCCTTTATTTCGAAATATGTCTGTTTCAAAAGGATGGTTCATGAGGTTGATGGAGGGAAACAGGCAATTTGTCACAAGAGACGCAGAAAAGGCTCACTTATTTTATCTTCCTTACAGCATGCGCCAATTGGAGTTGAAGCTTTATGTACCTGGTTCACATCAAATTAAACCACTGGCAATATTCCTCAGAGACTATGTGAACATGATTGCTGGGAAGTATCCTTTCTGGAATCGCACACATGGGACAGATCATTTTCTTCACGAGGAATTGGCCAACAATACAATAAAAGCTCTATGCAACGCTGACACCTCAGAAGAAGTTTTTGTTGCTGGGAAGGATGTTTCACTGCCAGAAACTAATATTAGGAACCCCAGGGTTCCCCTTAGAAATATTGGTGGATTAAGAGTGTCACAGCGCCCACTCCTTGCCTTCTTTGCAGGACGCATGCATGGCAGAGTCCGCCCAATATTTCTCAAGTATTGGCGGGACAAACATGAGGACATGAAAATCTATGGGCCTCTGCCTTCTAGAATCTCCCGAAAGATGTCATATATCCAACATATGAAGTCAAGTAAATTTTGTATTTGCCCAATGGGGTATGAAGTGAACAGCCCCAGGATCATTGAAGCCATATATTATGAGTGTGTCCCAGTGATAATTGCAGATAATTTCCCCCCTCCTTTGAGCGACGTGCTAGACTGGAGCAAATTTTCTGTTATTGTGGCTGAGAAGGATATCCCTAAGTTACGAGAGATTTTATTGGCTATTTCTATGAGAAGATACATGGCTATGCAAACAAATGTGAAACTGGACTTCAACGAGCATTGGGTGCCTGCAACAGTTGTTTCATGCAAATCTGATATAAAGAGCATAAAGGTGAGGCTAGGGGCGATTAAGAAGAAGAGGAACGCTGTGCTGAAGTATCTGAAGAATAATGTTGCTGTTCTTCTCAAGATTGGCCTTGATATTAATGTATATGGAGGGTTAAGTTTCATGGCTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

495

Amino Acids

56.64

Weight (kDa)

9.22

Isoelectric Point (pI)

41.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 152 - 413 7.6e-52 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1309
AciI CCGC 3 cut(s) 411, 940, 964
AclWI GGATC 4 cut(s) 266, 353, 458, 1106
AcoI YGGCCR 1 cut(s) 750
AcsI RAATTY 4 cut(s) 125, 392, 1055, 1187
AcuI CTGAAG 4 cut(s) 87, 471, 1418, 1427
AfaI GTAC 3 cut(s) 184, 368, 627
AgsI TTSAA 6 cut(s) 245, 397, 507, 616, 1106, 1297
AjiI CACGTC 1 cut(s) 1171
AjnI CCWGG 5 cut(s) 209, 229, 628, 851, 1094
AjuI GAANNNNNNNTTGG 2 cut(s) 186, 218
AluBI AGCT 2 cut(s) 619, 770
AluI AGCT 2 cut(s) 619, 770
Alw26I GTCTC 2 cut(s) 552, 663
AlwI GGATC 4 cut(s) 266, 353, 458, 1106
AlwNI CAGNNNCTG 1 cut(s) 275
AoxI GGCC 3 cut(s) 750, 995, 1438
ApoI RAATTY 4 cut(s) 125, 392, 1055, 1187
AseI ATTAAT 1 cut(s) 1449
AspLEI GCGC 2 cut(s) 603, 897
AspS9I GGNCC 2 cut(s) 207, 995
AsuHPI GGTGA 2 cut(s) 395, 1369
AsuII TTCGAA 1 cut(s) 490
AvaII GGWCC 1 cut(s) 207
AxyI CCTNAGG 1 cut(s) 276
BalI TGGCCA 1 cut(s) 752
BanI GGYRCC 1 cut(s) 1309
BarI GAAGNNNNNNTAC 2 cut(s) 85, 117
BauI CACGAG 1 cut(s) 740
BbsI GAAGAC 1 cut(s) 90
BccI CCATC 4 cut(s) 2, 301, 507, 523
BciT130I CCWGG 5 cut(s) 211, 231, 630, 853, 1096
BciVI GTATCC 1 cut(s) 708
BclI TGATCA 1 cut(s) 439
BcoDI GTCTC 2 cut(s) 552, 663
BfaI CTAG 5 cut(s) 113, 162, 1008, 1175, 1364
BfmI CTRYAG 1 cut(s) 39
BfoI RGCGCY 1 cut(s) 898
BfuI GTATCC 1 cut(s) 708
Bme1390I CCNGG 5 cut(s) 211, 231, 630, 853, 1096
Bme18I GGWCC 1 cut(s) 207
BmgBI CACGTC 1 cut(s) 1171
BmgT120I GGNCC 2 cut(s) 207, 995
BmiI GGNNCC 4 cut(s) 208, 848, 858, 1311
BmrFI CCNGG 5 cut(s) 211, 231, 630, 853, 1096
BmrI ACTGGG 2 cut(s) 139, 1124
BmsI GCATC 1 cut(s) 82
BmuI ACTGGG 2 cut(s) 139, 1124
BpiI GAAGAC 1 cut(s) 90
BpmI CTGGAG 2 cut(s) 103, 1201
Bpu14I TTCGAA 1 cut(s) 490
BpuEI CTTGAG 2 cut(s) 938, 1415
BsaBI GATNNNNATC 1 cut(s) 468
BsaJI CCNNGG 4 cut(s) 210, 851, 852, 1094
Bse1I ACTGG 6 cut(s) 29, 145, 657, 1130, 1184, 1293
Bse21I CCTNAGG 1 cut(s) 276
Bse8I GATNNNNATC 1 cut(s) 468
BseBI CCWGG 5 cut(s) 211, 231, 630, 853, 1096
BseDI CCNNGG 4 cut(s) 210, 851, 852, 1094
BseGI GGATG 4 cut(s) 13, 309, 518, 823
BseJI GATNNNNATC 1 cut(s) 468
BseMII CTCAG 4 cut(s) 267, 679, 804, 1197
BseNI ACTGG 6 cut(s) 29, 145, 657, 1130, 1184, 1293
BseYI CCCAGC 2 cut(s) 689, 809
BshFI GGCC 3 cut(s) 752, 997, 1440
BshNI GGYRCC 1 cut(s) 1309
BslFI GGGAC 5 cut(s) 220, 414, 736, 980, 1112
BsmAI GTCTC 2 cut(s) 552, 663
BsmBI CGTCTC 1 cut(s) 552
BsmFI GGGAC 5 cut(s) 220, 414, 736, 980, 1112
BsnI GGCC 3 cut(s) 752, 997, 1440
Bsp119I TTCGAA 1 cut(s) 490
Bsp143I GATC 7 cut(s) 271, 358, 439, 463, 469, 727, 1098
BspACI CCGC 3 cut(s) 411, 940, 964
BspANI GGCC 3 cut(s) 752, 997, 1440
BspCNI CTCAG 4 cut(s) 268, 678, 803, 1198
BspHI TCATGA 1 cut(s) 519
BspLI GGNNCC 4 cut(s) 208, 848, 858, 1311
BspMAI CTGCAG 1 cut(s) 43
BspPI GGATC 4 cut(s) 266, 353, 458, 1106
BspT104I TTCGAA 1 cut(s) 490
BspT107I GGYRCC 1 cut(s) 1309
BsrI ACTGG 6 cut(s) 29, 145, 657, 1130, 1184, 1293
BssECI CCNNGG 4 cut(s) 210, 851, 852, 1094
BssMI GATC 7 cut(s) 271, 358, 439, 463, 469, 727, 1098
BssSI CACGAG 1 cut(s) 740
Bst2BI CACGAG 1 cut(s) 740
Bst2UI CCWGG 5 cut(s) 211, 231, 630, 853, 1096
Bst4CI ACNGT 2 cut(s) 202, 1321
Bst6I CTCTTC 1 cut(s) 1376
BstAPI GCANNNNNTGC 1 cut(s) 1309
BstBI TTCGAA 1 cut(s) 490
BstC8I GCNNGC 3 cut(s) 599, 926, 1314
BstDEI CTNAG 7 cut(s) 77, 276, 665, 790, 863, 1206, 1221
BstF5I GGATG 4 cut(s) 13, 309, 518, 823
BstH2I RGCGCY 1 cut(s) 898
BstHHI GCGC 2 cut(s) 603, 897
BstKTI GATC 7 cut(s) 274, 361, 442, 466, 472, 730, 1101
BstMAI GTCTC 2 cut(s) 552, 663
BstMBI GATC 7 cut(s) 271, 358, 439, 463, 469, 727, 1098
BstMWI GCNNNNNNNGC 5 cut(s) 569, 914, 930, 939, 1309
BstNI CCWGG 5 cut(s) 211, 231, 630, 853, 1096
BstNSI RCATGY 2 cut(s) 601, 928
BstSCI CCNGG 5 cut(s) 209, 229, 628, 851, 1094
BstSFI CTRYAG 1 cut(s) 39
BstV2I GAAGAC 1 cut(s) 90
BstX2I RGATCY 1 cut(s) 271
BstYI RGATCY 1 cut(s) 271
Bsu36I CCTNAGG 1 cut(s) 276
BsuI GTATCC 1 cut(s) 708
BsuRI GGCC 3 cut(s) 752, 997, 1440
BtrI CACGTC 1 cut(s) 1171
BtsCI GGATG 4 cut(s) 13, 309, 518, 823
BtsI GCAGTG 1 cut(s) 824
BtsIMutI CAGTG 3 cut(s) 650, 824, 1137
Cac8I GCNNGC 3 cut(s) 599, 926, 1314
CaiI CAGNNNCTG 1 cut(s) 275
CciI TCATGA 1 cut(s) 519
CfoI GCGC 2 cut(s) 603, 897
Cfr13I GGNCC 2 cut(s) 207, 995
CseI GACGC 2 cut(s) 569, 930
CsiI ACCWGGT 1 cut(s) 628
Csp6I GTAC 3 cut(s) 183, 367, 626
CviQI GTAC 3 cut(s) 183, 367, 626
DdeI CTNAG 7 cut(s) 77, 276, 665, 790, 863, 1206, 1221
DpnI GATC 7 cut(s) 273, 360, 441, 465, 471, 729, 1100
DpnII GATC 7 cut(s) 271, 358, 439, 463, 469, 727, 1098
EaeI YGGCCR 1 cut(s) 750
Eam1104I CTCTTC 1 cut(s) 1376
EarI CTCTTC 1 cut(s) 1376
EciI GGCGGA 1 cut(s) 929
Eco32I GATATC 1 cut(s) 1216
Eco47I GGWCC 1 cut(s) 207
Eco57I CTGAAG 4 cut(s) 87, 471, 1418, 1427
Eco81I CCTNAGG 1 cut(s) 276
EcoRII CCWGG 5 cut(s) 209, 229, 628, 851, 1094
EcoRV GATATC 1 cut(s) 1216
EcoT22I ATGCAT 1 cut(s) 930
Esp3I CGTCTC 1 cut(s) 552
FalI AAGNNNNNCTT 2 cut(s) 560, 592
FaqI GGGAC 5 cut(s) 220, 414, 736, 980, 1112
FauI CCCGC 1 cut(s) 957
FauNDI CATATG 1 cut(s) 1041
FbaI TGATCA 1 cut(s) 439
FokI GGATG 4 cut(s) 20, 316, 525, 830
FspBI CTAG 5 cut(s) 113, 162, 1008, 1175, 1364
GlaI GCGC 2 cut(s) 602, 896
GsaI CCCAGC 2 cut(s) 693, 813
GsuI CTGGAG 2 cut(s) 103, 1201
HaeII RGCGCY 1 cut(s) 898
HaeIII GGCC 3 cut(s) 752, 997, 1440
HgaI GACGC 2 cut(s) 569, 930
HhaI GCGC 2 cut(s) 603, 897
Hin6I GCGC 2 cut(s) 601, 895
HinP1I GCGC 2 cut(s) 601, 895
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HindIII AAGCTT 1 cut(s) 617
HinfI GANTC 5 cut(s) 12, 116, 709, 936, 1011
HpaI GTTAAC 1 cut(s) 154
HphI GGTGA 2 cut(s) 395, 1369
Hpy166II GTNNAC 4 cut(s) 154, 635, 679, 1087
Hpy188I TCNGA 5 cut(s) 297, 668, 793, 1339, 1407
Hpy8I GTNNAC 4 cut(s) 154, 635, 679, 1087
Hpy99I CGWCG 1 cut(s) 1172
HpyAV CCTTC 6 cut(s) 56, 284, 808, 919, 1014, 1204
HpyCH4III ACNGT 2 cut(s) 202, 1321
HpyCH4IV ACGT 1 cut(s) 1170
HpyF10VI GCNNNNNNNGC 5 cut(s) 569, 914, 930, 939, 1309
HpyF3I CTNAG 7 cut(s) 77, 276, 665, 790, 863, 1206, 1221
HpySE526I ACGT 1 cut(s) 1170
HspAI GCGC 2 cut(s) 601, 895
Ksp22I TGATCA 1 cut(s) 439
KspAI GTTAAC 1 cut(s) 154
Kzo9I GATC 7 cut(s) 271, 358, 439, 463, 469, 727, 1098
LmnI GCTCC 1 cut(s) 1182
LweI GCATC 1 cut(s) 82
MabI ACCWGGT 1 cut(s) 628
MaeI CTAG 5 cut(s) 113, 162, 1008, 1175, 1364
MaeII ACGT 1 cut(s) 1170
MaeIII GTNAC 4 cut(s) 66, 550, 888, 1224
MalI GATC 7 cut(s) 273, 360, 441, 465, 471, 729, 1100
MboI GATC 7 cut(s) 271, 358, 439, 463, 469, 727, 1098
MfeI CAATTG 1 cut(s) 605
MflI RGATCY 1 cut(s) 271
MlsI TGGCCA 1 cut(s) 752
MluNI TGGCCA 1 cut(s) 752
MlyI GAGTC 2 cut(s) 110, 945
MmeI TCCRAC 1 cut(s) 1060
Mox20I TGGCCA 1 cut(s) 752
Mph1103I ATGCAT 1 cut(s) 930
MscI TGGCCA 1 cut(s) 752
MseI TTAA 9 cut(s) 129, 153, 218, 284, 645, 881, 1374, 1449, 1466
MslI CAYNNNNRTG 2 cut(s) 1268, 1355
Msp20I TGGCCA 1 cut(s) 752
MspR9I CCNGG 5 cut(s) 211, 231, 630, 853, 1096
MunI CAATTG 1 cut(s) 605
MvaI CCWGG 5 cut(s) 211, 231, 630, 853, 1096
MwoI GCNNNNNNNGC 5 cut(s) 569, 914, 930, 939, 1309
NdeI CATATG 1 cut(s) 1041
NdeII GATC 7 cut(s) 271, 358, 439, 463, 469, 727, 1098
NlaIV GGNNCC 4 cut(s) 208, 848, 858, 1311
NmuCI GTSAC 2 cut(s) 550, 888
NsiI ATGCAT 1 cut(s) 930
NspI RCATGY 2 cut(s) 601, 928
NspV TTCGAA 1 cut(s) 490
PaeI GCATGC 2 cut(s) 601, 928
PagI TCATGA 1 cut(s) 519
PasI CCCWGGG 1 cut(s) 852
PfeI GAWTC 3 cut(s) 12, 709, 1011
PleI GAGTC 2 cut(s) 110, 944
PpsI GAGTC 2 cut(s) 110, 944
PshBI ATTAAT 1 cut(s) 1449
Psp6I CCWGG 5 cut(s) 209, 229, 628, 851, 1094
PspFI CCCAGC 2 cut(s) 689, 809
PspGI CCWGG 5 cut(s) 209, 229, 628, 851, 1094
PspN4I GGNNCC 4 cut(s) 208, 848, 858, 1311
PspPI GGNCC 2 cut(s) 207, 995
PstI CTGCAG 1 cut(s) 43
PstNI CAGNNNCTG 1 cut(s) 275
PsuI RGATCY 1 cut(s) 271
RsaI GTAC 3 cut(s) 184, 368, 627
RsaNI GTAC 3 cut(s) 183, 367, 626
RseI CAYNNNNRTG 2 cut(s) 1268, 1355
SaqAI TTAA 9 cut(s) 129, 153, 218, 284, 645, 881, 1374, 1449, 1466
Sau3AI GATC 7 cut(s) 271, 358, 439, 463, 469, 727, 1098
Sau96I GGNCC 2 cut(s) 207, 995
SchI GAGTC 2 cut(s) 110, 945
ScrFI CCNGG 5 cut(s) 211, 231, 630, 853, 1096
SexAI ACCWGGT 1 cut(s) 628
SfaNI GCATC 1 cut(s) 82
SfcI CTRYAG 1 cut(s) 39
SfuI TTCGAA 1 cut(s) 490
SinI GGWCC 1 cut(s) 207
SmiMI CAYNNNNRTG 2 cut(s) 1268, 1355
SmlI CTYRAG 2 cut(s) 953, 1430
SmoI CTYRAG 2 cut(s) 953, 1430
SphI GCATGC 2 cut(s) 601, 928
SsiI CCGC 3 cut(s) 411, 940, 964
SspI AATATT 4 cut(s) 660, 841, 871, 948
SspMI CTAG 5 cut(s) 113, 162, 1008, 1175, 1364
StyD4I CCNGG 5 cut(s) 209, 229, 628, 851, 1094
TaaI ACNGT 2 cut(s) 202, 1321
TaiI ACGT 1 cut(s) 1173
TaqI TCGA 2 cut(s) 333, 490
TatI WGTACW 2 cut(s) 182, 366
TfiI GAWTC 3 cut(s) 12, 709, 1011
Tru1I TTAA 9 cut(s) 129, 153, 218, 284, 645, 881, 1374, 1449, 1466
Tru9I TTAA 9 cut(s) 129, 153, 218, 284, 645, 881, 1374, 1449, 1466
TscAI CASTG 3 cut(s) 657, 831, 1137
TseFI GTSAC 2 cut(s) 550, 888
Tsp45I GTSAC 2 cut(s) 550, 888
TspDTI ATGAA 6 cut(s) 508, 998, 1058, 1095, 1317, 1462
TspGWI ACGGA 1 cut(s) 316
TspRI CASTG 3 cut(s) 657, 831, 1137
VpaK11BI GGWCC 1 cut(s) 207
VspI ATTAAT 1 cut(s) 1449
XapI RAATTY 4 cut(s) 125, 392, 1055, 1187
XbaI TCTAGA 1 cut(s) 1007
XceI RCATGY 2 cut(s) 601, 928
XspI CTAG 5 cut(s) 113, 162, 1008, 1175, 1364
Zsp2I ATGCAT 1 cut(s) 930
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.