Rw7G018220

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0006790
Physical Location & Seq
Forward (+)
19485293 .. 19490330
5038 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G018220.1

Sequence Viewer

Length: 1632 bp
ATGAGAGAGTTATTGCAGAGCTTTGCTGTGATCATAATGAAAGAGTTTTTCCGGCTCTGTGCTGGGTTAAAAATTGACTGGAAAAGGTTGATCTTTGCTGGGGCCTTTATGACAACAGCCGGTGTGATTCTGCAAATGTTTCTACTTAATGATCCACTTGACATGTGGTCCCTCTCTCTACCCATTGCAAATGTGTCAGACGAATCGTTGAACAGTATCAGGAGCTTTAATCAGACCTTTAGTGAGGGAAGGGTCAAAAGATTGGAACTCATTTCTGCTGATGTTCCCATTGTTCCACCAAACTCTTCTCTTAAGTTGAATCTCTCAATTCCAGTTATGCCATATATTGGCACAGTTCCTACAGGGAGATCAAGAAGGAGAAAGAAAGGTGGAAATGTAGATAACATGTCAAAGGTCATACCTCCTCCTGACCCTCCACGTATACATGTGCCTTATCGTTTGCAGAAATTCATTTGGTCCTTGACACCCAATGAGGCACTTGTGTATGCGAAGAAAGAGATTGATCATGCCCCTGAAGTTATTGACGATCCTGATCTATATGCCCCTTTATTTCGAAATATGTCTGTTTTCAAAAGGAGCTATGAGTTGATGGAATTGATACTTAAAGTTTACATTTACAGTGATGGGTCAAGGCCCATATTTCATGTACCTCATCTCAACGGAATTTATGCTTCTGAAGGATGGTTCATGAGGTTGATGGAGGGAAACAGGCAATTTGTCACAAGAGACCCAGAAAAGGCTCACTTATTTTATCTTCCTTACAGCATGCGCCAATTGGAGTTGAAGCTTTATGTACCTGGTTCACATCAAATTAAACCACTGGCAATATTCCTCAGAGACTATGTGAACATGATTGCTGGGAAGTATCCTTTCTGGAATCGCACCCATGGGACAGATCATTTTCTTGTTGCTTGCCATGACTGGGGGCCTTACACACTTACTCAGCACGAGGAACTGGCCAACAATACAATAAAAGCTCTATGCAACGCTGACACCTCAGAAGGAGTTTTTGTTGCTGGGAAGGATGTTTCACTGCCAGAAACTAATATTAGGAACCCCAGGGTTCCCCTTAGAAATATTGGTGGATTAAGAGTGTCACAGCGCCCACTCCTTGCCTTCTTTGCAGGACGCATGCATGGCAGAGTCCGCCCGATACTTCTCAAGTACTGGCGGGACAAACATGAGGACATGAAAATCTATGGGCCTCTGCCCTCTAGAATCTCCCGTAAGATGTCATATATCCAGCATATGAAGTCAAGTAAATTTTGTATTTGCCCAATGGGGTATGAAGTGAACAGCCCTAGGATCATTGAAGCCATATATTATGAGTGTGTCCCAGTGATAATTGCAGATAATTTCCCCCCTCCTTTGAGCGACGTGCTAGACTGGAGCAAATTTTCTGTTATTGTGGCTGAGAAGGATATCCCCAAGTTACGAGAGATTTTATTGGCTATTCCTATGAGAAGATACATGGCAATGCAAAGAAATGTGAAAATGGTGAAAAGGCATTTTCTTTGGAATCGAAGGCCAATCAGATATGATTTATTCCATATGATTCTGCATTCCATCTGGTTAAGCAGATTGAGCCAGATTCAAATCCCAGAATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

543

Amino Acids

63.03

Weight (kDa)

9.65

Isoelectric Point (pI)

49.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 208 - 489 6.1e-65 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 347
AccI GTMKAC 1 cut(s) 442
AciI CCGC 2 cut(s) 1168, 1192
AclWI GGATC 3 cut(s) 146, 542, 1334
AcoI YGGCCR 1 cut(s) 978
AcsI RAATTY 4 cut(s) 467, 684, 1283, 1415
AcuI CTGAAG 2 cut(s) 555, 717
AfaI GTAC 3 cut(s) 669, 816, 1187
AfiI CCNNNNNNNGG 3 cut(s) 347, 757, 943
AflII CTTAAG 1 cut(s) 311
AflIII ACRYGT 3 cut(s) 162, 405, 445
AgsI TTSAA 6 cut(s) 211, 319, 592, 805, 1334, 1616
AhdI GACNNNNNGTC 1 cut(s) 166
AjiI CACGTC 1 cut(s) 1399
AjnI CCWGG 2 cut(s) 817, 1079
AluBI AGCT 5 cut(s) 21, 225, 600, 808, 998
AluI AGCT 5 cut(s) 21, 225, 600, 808, 998
Alw26I GTCTC 2 cut(s) 741, 852
AlwI GGATC 3 cut(s) 146, 542, 1334
AoxI GGCC 6 cut(s) 102, 653, 947, 978, 1223, 1547
ApoI RAATTY 4 cut(s) 467, 684, 1283, 1415
AspA2I CCTAGG 1 cut(s) 1322
AspLEI GCGC 2 cut(s) 792, 1125
AspS9I GGNCC 6 cut(s) 102, 168, 477, 654, 947, 1223
AsuHPI GGTGA 1 cut(s) 1531
AsuII TTCGAA 1 cut(s) 574
AvaII GGWCC 2 cut(s) 168, 477
AvrII CCTAGG 1 cut(s) 1322
BalI TGGCCA 1 cut(s) 980
BauI CACGAG 1 cut(s) 968
BccI CCATC 5 cut(s) 604, 638, 696, 712, 1595
BciT130I CCWGG 2 cut(s) 819, 1081
BciVI GTATCC 1 cut(s) 897
BclI TGATCA 2 cut(s) 30, 523
BcoDI GTCTC 2 cut(s) 741, 852
BfaI CTAG 4 cut(s) 1236, 1323, 1403, 1630
BfmI CTRYAG 1 cut(s) 360
BfoI RGCGCY 1 cut(s) 1126
BfrI CTTAAG 1 cut(s) 311
BfuI GTATCC 1 cut(s) 897
BlnI CCTAGG 1 cut(s) 1322
BmcAI AGTACT 1 cut(s) 1187
Bme1390I CCNGG 2 cut(s) 819, 1081
Bme18I GGWCC 2 cut(s) 168, 477
BmeRI GACNNNNNGTC 1 cut(s) 166
BmgBI CACGTC 1 cut(s) 1399
BmgT120I GGNCC 6 cut(s) 102, 168, 477, 654, 947, 1223
BmiI GGNNCC 5 cut(s) 103, 170, 948, 1076, 1086
BmrFI CCNGG 2 cut(s) 819, 1081
BmrI ACTGGG 2 cut(s) 952, 1352
BmuI ACTGGG 2 cut(s) 952, 1352
BpmI CTGGAG 1 cut(s) 1429
Bpu14I TTCGAA 1 cut(s) 574
BpuEI CTTGAG 1 cut(s) 1166
BsaAI YACGTR 1 cut(s) 440
BsaBI GATNNNNATC 2 cut(s) 552, 1616
BsaI GGTCTC 1 cut(s) 741
BsaJI CCNNGG 4 cut(s) 907, 1079, 1080, 1322
BsaXI ACNNNNNCTCC 2 cut(s) 1017, 1047
Bsc4I CCNNNNNNNGG 3 cut(s) 347, 757, 943
Bse118I RCCGGY 1 cut(s) 119
Bse1I ACTGG 8 cut(s) 83, 332, 846, 947, 981, 1193, 1358, 1412
Bse3DI GCAATG 2 cut(s) 183, 1503
Bse8I GATNNNNATC 2 cut(s) 552, 1616
BseBI CCWGG 2 cut(s) 819, 1081
BseDI CCNNGG 4 cut(s) 907, 1079, 1080, 1322
BseGI GGATG 2 cut(s) 707, 1051
BseJI GATNNNNATC 2 cut(s) 552, 1616
BseLI CCNNNNNNNGG 3 cut(s) 347, 757, 943
BseMI GCAATG 2 cut(s) 183, 1503
BseMII CTCAG 4 cut(s) 868, 977, 1032, 1425
BseNI ACTGG 8 cut(s) 83, 332, 846, 947, 981, 1193, 1358, 1412
BseRI GAGGAG 1 cut(s) 414
BseYI CCCAGC 4 cut(s) 62, 98, 878, 1037
BshFI GGCC 6 cut(s) 104, 655, 949, 980, 1225, 1549
BsiSI CCGG 2 cut(s) 52, 120
BslFI GGGAC 4 cut(s) 154, 925, 1208, 1340
BslI CCNNNNNNNGG 3 cut(s) 347, 757, 943
BsmAI GTCTC 2 cut(s) 741, 852
BsmFI GGGAC 4 cut(s) 154, 925, 1208, 1340
BsmI GAATGC 1 cut(s) 1582
BsnI GGCC 6 cut(s) 104, 655, 949, 980, 1225, 1549
Bso31I GGTCTC 1 cut(s) 741
Bsp119I TTCGAA 1 cut(s) 574
Bsp143I GATC 9 cut(s) 30, 90, 151, 368, 523, 547, 553, 916, 1326
Bsp19I CCATGG 1 cut(s) 907
BspACI CCGC 2 cut(s) 1168, 1192
BspANI GGCC 6 cut(s) 104, 655, 949, 980, 1225, 1549
BspCNI CTCAG 4 cut(s) 867, 976, 1031, 1426
BspHI TCATGA 1 cut(s) 708
BspLI GGNNCC 5 cut(s) 103, 170, 948, 1076, 1086
BspPI GGATC 3 cut(s) 146, 542, 1334
BspT104I TTCGAA 1 cut(s) 574
BspTI CTTAAG 1 cut(s) 311
BspTNI GGTCTC 1 cut(s) 741
BsrDI GCAATG 2 cut(s) 183, 1503
BsrFI RCCGGY 1 cut(s) 119
BsrI ACTGG 8 cut(s) 83, 332, 846, 947, 981, 1193, 1358, 1412
BssAI RCCGGY 1 cut(s) 119
BssECI CCNNGG 4 cut(s) 907, 1079, 1080, 1322
BssMI GATC 9 cut(s) 30, 90, 151, 368, 523, 547, 553, 916, 1326
BssNAI GTATAC 1 cut(s) 443
BssSI CACGAG 1 cut(s) 968
BssT1I CCWWGG 2 cut(s) 907, 1322
Bst1107I GTATAC 1 cut(s) 443
Bst2BI CACGAG 1 cut(s) 968
Bst2UI CCWGG 2 cut(s) 819, 1081
Bst4CI ACNGT 3 cut(s) 215, 355, 641
Bst6I CTCTTC 1 cut(s) 310
BstAFI CTTAAG 1 cut(s) 311
BstBAI YACGTR 1 cut(s) 440
BstBI TTCGAA 1 cut(s) 574
BstC8I GCNNGC 3 cut(s) 788, 934, 1154
BstDEI CTNAG 5 cut(s) 854, 963, 1018, 1091, 1434
BstDSI CCRYGG 1 cut(s) 907
BstF5I GGATG 2 cut(s) 707, 1051
BstH2I RGCGCY 1 cut(s) 1126
BstHHI GCGC 2 cut(s) 792, 1125
BstKTI GATC 9 cut(s) 33, 93, 154, 371, 526, 550, 556, 919, 1329
BstMAI GTCTC 2 cut(s) 741, 852
BstMBI GATC 9 cut(s) 30, 90, 151, 368, 523, 547, 553, 916, 1326
BstMWI GCNNNNNNNGC 4 cut(s) 1142, 1158, 1167, 1605
BstNI CCWGG 2 cut(s) 819, 1081
BstNSI RCATGY 5 cut(s) 166, 409, 449, 790, 1156
BstSCI CCNGG 2 cut(s) 817, 1079
BstSFI CTRYAG 1 cut(s) 360
BstZ17I GTATAC 1 cut(s) 443
BsuI GTATCC 1 cut(s) 897
BsuRI GGCC 6 cut(s) 104, 655, 949, 980, 1225, 1549
BtgI CCRYGG 1 cut(s) 907
BtrI CACGTC 1 cut(s) 1399
BtsCI GGATG 2 cut(s) 707, 1051
BtsI GCAGTG 1 cut(s) 1052
BtsIMutI CAGTG 4 cut(s) 646, 839, 1052, 1365
Cac8I GCNNGC 3 cut(s) 788, 934, 1154
CciI TCATGA 1 cut(s) 708
CfoI GCGC 2 cut(s) 792, 1125
Cfr10I RCCGGY 1 cut(s) 119
Cfr13I GGNCC 6 cut(s) 102, 168, 477, 654, 947, 1223
CseI GACGC 1 cut(s) 1158
CsiI ACCWGGT 1 cut(s) 817
Csp6I GTAC 3 cut(s) 668, 815, 1186
CviQI GTAC 3 cut(s) 668, 815, 1186
DdeI CTNAG 5 cut(s) 854, 963, 1018, 1091, 1434
DpnI GATC 9 cut(s) 32, 92, 153, 370, 525, 549, 555, 918, 1328
DpnII GATC 9 cut(s) 30, 90, 151, 368, 523, 547, 553, 916, 1326
DriI GACNNNNNGTC 1 cut(s) 166
EaeI YGGCCR 1 cut(s) 978
Eam1104I CTCTTC 1 cut(s) 310
Eam1105I GACNNNNNGTC 1 cut(s) 166
EarI CTCTTC 1 cut(s) 310
EciI GGCGGA 1 cut(s) 1157
Eco130I CCWWGG 2 cut(s) 907, 1322
Eco31I GGTCTC 1 cut(s) 741
Eco32I GATATC 1 cut(s) 1444
Eco47I GGWCC 2 cut(s) 168, 477
Eco57I CTGAAG 2 cut(s) 555, 717
EcoO109I RGGNCCY 2 cut(s) 102, 947
EcoRII CCWGG 2 cut(s) 817, 1079
EcoRV GATATC 1 cut(s) 1444
EcoT14I CCWWGG 2 cut(s) 907, 1322
EcoT22I ATGCAT 1 cut(s) 1158
ErhI CCWWGG 2 cut(s) 907, 1322
FalI AAGNNNNNCTT 2 cut(s) 749, 781
FaqI GGGAC 4 cut(s) 154, 925, 1208, 1340
FauI CCCGC 1 cut(s) 1185
FauNDI CATATG 2 cut(s) 1269, 1572
FbaI TGATCA 2 cut(s) 30, 523
FblI GTMKAC 1 cut(s) 442
FokI GGATG 2 cut(s) 714, 1058
FspBI CTAG 4 cut(s) 1236, 1323, 1403, 1630
GlaI GCGC 2 cut(s) 791, 1124
GsaI CCCAGC 4 cut(s) 66, 102, 882, 1041
GsuI CTGGAG 1 cut(s) 1429
HaeII RGCGCY 1 cut(s) 1126
HaeIII GGCC 6 cut(s) 104, 655, 949, 980, 1225, 1549
HapII CCGG 2 cut(s) 52, 120
HgaI GACGC 1 cut(s) 1158
HhaI GCGC 2 cut(s) 792, 1125
Hin6I GCGC 2 cut(s) 790, 1123
HinP1I GCGC 2 cut(s) 790, 1123
HindIII AAGCTT 1 cut(s) 806
HpaII CCGG 2 cut(s) 52, 120
HphI GGTGA 1 cut(s) 1531
Hpy166II GTNNAC 5 cut(s) 443, 631, 824, 868, 1315
Hpy188I TCNGA 6 cut(s) 199, 234, 697, 857, 1021, 1556
Hpy188III TCNNGA 7 cut(s) 220, 372, 428, 551, 709, 895, 1236
Hpy8I GTNNAC 5 cut(s) 443, 631, 824, 868, 1315
Hpy99I CGWCG 1 cut(s) 1400
HpyAV CCTTC 8 cut(s) 243, 369, 692, 1016, 1036, 1147, 1432, 1539
HpyCH4III ACNGT 3 cut(s) 215, 355, 641
HpyCH4IV ACGT 2 cut(s) 439, 1398
HpyF10VI GCNNNNNNNGC 4 cut(s) 1142, 1158, 1167, 1605
HpyF3I CTNAG 5 cut(s) 854, 963, 1018, 1091, 1434
HpySE526I ACGT 2 cut(s) 439, 1398
HspAI GCGC 2 cut(s) 790, 1123
Ksp22I TGATCA 2 cut(s) 30, 523
Kzo9I GATC 9 cut(s) 30, 90, 151, 368, 523, 547, 553, 916, 1326
LmnI GCTCC 3 cut(s) 222, 597, 1410
MabI ACCWGGT 1 cut(s) 817
MaeI CTAG 4 cut(s) 1236, 1323, 1403, 1630
MaeII ACGT 2 cut(s) 439, 1398
MaeIII GTNAC 3 cut(s) 739, 1116, 1452
MalI GATC 9 cut(s) 32, 92, 153, 370, 525, 549, 555, 918, 1328
MboI GATC 9 cut(s) 30, 90, 151, 368, 523, 547, 553, 916, 1326
MboII GAAGA 4 cut(s) 297, 523, 767, 1497
MfeI CAATTG 1 cut(s) 794
MlsI TGGCCA 1 cut(s) 980
MluNI TGGCCA 1 cut(s) 980
MlyI GAGTC 1 cut(s) 1173
Mox20I TGGCCA 1 cut(s) 980
Mph1103I ATGCAT 1 cut(s) 1158
MscI TGGCCA 1 cut(s) 980
MseI TTAA 8 cut(s) 68, 147, 228, 312, 624, 834, 1109, 1595
MslI CAYNNNNRTG 1 cut(s) 1496
Msp20I TGGCCA 1 cut(s) 980
MspCI CTTAAG 1 cut(s) 311
MspI CCGG 2 cut(s) 52, 120
MspR9I CCNGG 2 cut(s) 819, 1081
MunI CAATTG 1 cut(s) 794
Mva1269I GAATGC 1 cut(s) 1582
MvaI CCWGG 2 cut(s) 819, 1081
MwoI GCNNNNNNNGC 4 cut(s) 1142, 1158, 1167, 1605
NcoI CCATGG 1 cut(s) 907
NdeI CATATG 2 cut(s) 1269, 1572
NdeII GATC 9 cut(s) 30, 90, 151, 368, 523, 547, 553, 916, 1326
NlaIV GGNNCC 5 cut(s) 103, 170, 948, 1076, 1086
NmuCI GTSAC 2 cut(s) 739, 1116
NsiI ATGCAT 1 cut(s) 1158
NspI RCATGY 5 cut(s) 166, 409, 449, 790, 1156
NspV TTCGAA 1 cut(s) 574
PaeI GCATGC 2 cut(s) 790, 1156
PagI TCATGA 1 cut(s) 708
PasI CCCWGGG 1 cut(s) 1080
PciI ACATGT 3 cut(s) 162, 405, 445
PctI GAATGC 1 cut(s) 1582
PfeI GAWTC 9 cut(s) 127, 203, 319, 898, 1239, 1540, 1576, 1612, 1625
PflMI CCANNNNNTGG 1 cut(s) 347
PleI GAGTC 1 cut(s) 1172
PpsI GAGTC 1 cut(s) 1172
Ppu21I YACGTR 1 cut(s) 440
PscI ACATGT 3 cut(s) 162, 405, 445
Psp6I CCWGG 2 cut(s) 817, 1079
PspFI CCCAGC 4 cut(s) 62, 98, 878, 1037
PspGI CCWGG 2 cut(s) 817, 1079
PspN4I GGNNCC 5 cut(s) 103, 170, 948, 1076, 1086
PspPI GGNCC 6 cut(s) 102, 168, 477, 654, 947, 1223
RsaI GTAC 3 cut(s) 669, 816, 1187
RsaNI GTAC 3 cut(s) 668, 815, 1186
RseI CAYNNNNRTG 1 cut(s) 1496
SaqAI TTAA 8 cut(s) 68, 147, 228, 312, 624, 834, 1109, 1595
Sau3AI GATC 9 cut(s) 30, 90, 151, 368, 523, 547, 553, 916, 1326
Sau96I GGNCC 6 cut(s) 102, 168, 477, 654, 947, 1223
ScaI AGTACT 1 cut(s) 1187
SchI GAGTC 1 cut(s) 1173
ScrFI CCNGG 2 cut(s) 819, 1081
SexAI ACCWGGT 1 cut(s) 817
SfcI CTRYAG 1 cut(s) 360
SfuI TTCGAA 1 cut(s) 574
SinI GGWCC 2 cut(s) 168, 477
SmiMI CAYNNNNRTG 1 cut(s) 1496
SmlI CTYRAG 2 cut(s) 311, 1181
SmoI CTYRAG 2 cut(s) 311, 1181
SphI GCATGC 2 cut(s) 790, 1156
SsiI CCGC 2 cut(s) 1168, 1192
SspI AATATT 3 cut(s) 849, 1069, 1099
SspMI CTAG 4 cut(s) 1236, 1323, 1403, 1630
StyD4I CCNGG 2 cut(s) 817, 1079
StyI CCWWGG 2 cut(s) 907, 1322
TaaI ACNGT 3 cut(s) 215, 355, 641
TaiI ACGT 2 cut(s) 442, 1401
TaqI TCGA 2 cut(s) 574, 1543
TatI WGTACW 1 cut(s) 1185
TfiI GAWTC 9 cut(s) 127, 203, 319, 898, 1239, 1540, 1576, 1612, 1625
Tru1I TTAA 8 cut(s) 68, 147, 228, 312, 624, 834, 1109, 1595
Tru9I TTAA 8 cut(s) 68, 147, 228, 312, 624, 834, 1109, 1595
TscAI CASTG 4 cut(s) 646, 846, 1059, 1365
TseFI GTSAC 2 cut(s) 739, 1116
Tsp45I GTSAC 2 cut(s) 739, 1116
TspDTI ATGAA 7 cut(s) 53, 460, 653, 697, 1226, 1286, 1323
TspGWI ACGGA 1 cut(s) 696
TspRI CASTG 4 cut(s) 646, 846, 1059, 1365
Van91I CCANNNNNTGG 1 cut(s) 347
Vha464I CTTAAG 1 cut(s) 311
VpaK11BI GGWCC 2 cut(s) 168, 477
XapI RAATTY 4 cut(s) 467, 684, 1283, 1415
XbaI TCTAGA 1 cut(s) 1235
XceI RCATGY 5 cut(s) 166, 409, 449, 790, 1156
XcmI CCANNNNNNNNNTGG 1 cut(s) 162
XmaJI CCTAGG 1 cut(s) 1322
XmiI GTMKAC 1 cut(s) 442
XspI CTAG 4 cut(s) 1236, 1323, 1403, 1630
ZrmI AGTACT 1 cut(s) 1187
Zsp2I ATGCAT 1 cut(s) 1158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.