FvH4_5g19390

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0006790
Physical Location & Seq
Forward (+)
11229565 .. 11235106
5542 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g19390.t1

Sequence Viewer

Length: 1632 bp
ATGAAAAAGTTATTCCAGAGCCTTGCTGTGATCCTAATGAAAGAGTTTTTCCGGCTCTGTGCCGGTTTAAGAATTGACTGGAAAAGGGTAATCTTTGTTGGGGCCTTAATGACAACAGCCGGTGTAATTCTGCAAATGTTTCTACTTACTGATCTGCTTGACATGTGGCCCCTCTCTCTACCCATTGCACATGTTTCAGACGAATCGTTGAGCAGTATCAGGAGCTTAAATCAGACCTTTAGTGAGGAAAGAGTCAAAAGATTGCAACTCATTTCTACCGATGTTCCCATTATTCCAGCAAACTCTTCTCTTAAGTTGAATATCTCAGTTCCAGCTATGCCAGATATTGGCCCAGTTCCTAAAGGGAGATCAAGAAGGAGAAACAAAGGTGGTAGTGTAGATAACATGCCAAAGGTTCTACCTCCTCCTGACCCTCCAAGTATACATGTGCCTTATCGTTTGCAGAAATTCATTTGGTCCTTGAAACCCAATGAGGCACTTGTGTATGCAAAGAAAGAGATTGATCATGCCCCTGAAGTTGTTGATGATCCTGATCTATATGCCCCTGTATTTCGAAATATGTCTGTTTTCAAAAGGAGCTATGAGCTGATGGAATTGATACTTAAAGTTTACATTTACCGGGAAGGGTCAAAGCCTATATTTCATGTACCTCATCTCAATGGAATTTATGCTTCTGAAGGGTGGTTCATGAGGTTCATGGAGAGTAACAAGCAATTTGTCACAAGAGACCCAGAAAAGGCCCACTTATTTTATCTTCCTTACAGCATGCGCCAATTGGAGTTGAAGCTTTATGTACCTGGTTCACATCAAATTAAACCACTGGCAATATTCCTCAGAGACTATGTGAACATGATTGCGGGGAAGTATCCTTTCTGGAATCGCACATCTGGGTCAGATCATTTTCTTGTTGCTTGTCATGACTGGGGCCCTTACACACTCACTCAACACGAGGAACTGGCCAACAATACAATAAAAGCTCTGTGCAATGCTGACACTTCAGAAGGGGTTTTTGTTGCTGGGAAGGATGTTTCACTGCCAGAAACTACTATTAAGAACCCCAGGGTTCCTCTTAGAAATATTGGTGGATTAAGAGTGTCACAGCGCCCTCTCCTTGCCTTCTTTGCAGGATACATGCATGGCAGAGTCCGCCCGAGACTTCTCAAGTACTGGCGGGACAAACATGAGGACATGAAAATCTATGGGCCTCTGCCCTCTAGAATCTCCCGAAAGATGTCATATATCCACCATATGAAGTCAAGTAAGTTTTGTATTTGCCCAATGGGGTATGAAGTGAACAGCCCTAGGATCATTGAATCCATATACTATGAGTGTGTCCCAGTGATAATTGCAGACAATTTTCCCCCTCCGTTGAGCGACGTGCTAGACTGGAGTAAATTTTCTGTTAATGTGGCCGAGAAGGATATCCCCAAGTTACGTGAGATTTTGTTGGCTATTCCCATGAGAAGATACATGGCTATGCAAACTAATGTGAAAATGGTGAAAAGACATTTTCTTTGGAATCGAAGTCCAATCAGATATGATTTATTCCATATGATTCTGCATTCCATCTGGTTAAGCAGGTTGAACCAGATTCAAATCCCAGAATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

544

Amino Acids

62.87

Weight (kDa)

9.59

Isoelectric Point (pI)

53.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 208 - 489 5.9e-64 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1590
AccB7I CCANNNNNTGG 1 cut(s) 347
AccI GTMKAC 1 cut(s) 442
AciI CCGC 3 cut(s) 878, 1168, 1192
AclWI GGATC 3 cut(s) 25, 542, 1334
AcoI YGGCCR 2 cut(s) 978, 1431
AcsI RAATTY 3 cut(s) 467, 684, 1415
AcuI CTGAAG 3 cut(s) 555, 717, 1002
AfaI GTAC 3 cut(s) 669, 816, 1187
AfiI CCNNNNNNNGG 2 cut(s) 347, 757
AflII CTTAAG 1 cut(s) 311
AflIII ACRYGT 3 cut(s) 162, 190, 445
AgsI TTSAA 7 cut(s) 319, 484, 592, 805, 1334, 1606, 1616
AjiI CACGTC 1 cut(s) 1399
AjnI CCWGG 2 cut(s) 817, 1079
AluBI AGCT 6 cut(s) 225, 335, 600, 607, 808, 998
AluI AGCT 6 cut(s) 225, 335, 600, 607, 808, 998
Alw26I GTCTC 3 cut(s) 741, 852, 1168
AlwI GGATC 3 cut(s) 25, 542, 1334
Ama87I CYCGRG 1 cut(s) 1171
AoxI GGCC 8 cut(s) 102, 167, 349, 759, 946, 978, 1223, 1431
ApaI GGGCCC 1 cut(s) 950
ApoI RAATTY 3 cut(s) 467, 684, 1415
ArsI GACNNNNNNTTYG 2 cut(s) 1518, 1550
AspA2I CCTAGG 1 cut(s) 1322
AspLEI GCGC 2 cut(s) 792, 1125
AspS9I GGNCC 8 cut(s) 102, 168, 350, 477, 760, 946, 947, 1223
AsuC2I CCSGG 1 cut(s) 641
AsuHPI GGTGA 1 cut(s) 1531
AsuII TTCGAA 1 cut(s) 574
AvaI CYCGRG 1 cut(s) 1171
AvaII GGWCC 1 cut(s) 477
AvrII CCTAGG 1 cut(s) 1322
BaeGI GKGCMC 1 cut(s) 950
BalI TGGCCA 1 cut(s) 980
BanII GRGCYC 1 cut(s) 950
BauI CACGAG 1 cut(s) 968
BccI CCATC 2 cut(s) 604, 1595
BciT130I CCWGG 2 cut(s) 819, 1081
BciVI GTATCC 2 cut(s) 897, 1142
BclI TGATCA 1 cut(s) 523
BcnI CCSGG 1 cut(s) 641
BcoDI GTCTC 3 cut(s) 741, 852, 1168
BfaI CTAG 4 cut(s) 1236, 1323, 1403, 1630
BfoI RGCGCY 1 cut(s) 1126
BfrI CTTAAG 1 cut(s) 311
BfuAI ACCTGC 1 cut(s) 1590
BfuI GTATCC 2 cut(s) 897, 1142
BlnI CCTAGG 1 cut(s) 1322
BmcAI AGTACT 1 cut(s) 1187
Bme1390I CCNGG 3 cut(s) 641, 819, 1081
Bme18I GGWCC 1 cut(s) 477
BmeT110I CYCGRG 1 cut(s) 1171
BmgBI CACGTC 1 cut(s) 1399
BmgT120I GGNCC 8 cut(s) 102, 168, 350, 477, 760, 946, 947, 1223
BmiI GGNNCC 5 cut(s) 103, 170, 947, 948, 1086
BmrFI CCNGG 3 cut(s) 641, 819, 1081
BmrI ACTGGG 3 cut(s) 347, 952, 1352
BmuI ACTGGG 3 cut(s) 347, 952, 1352
BpmI CTGGAG 1 cut(s) 1429
Bpu14I TTCGAA 1 cut(s) 574
BpuEI CTTGAG 1 cut(s) 1166
BpuMI CCSGG 1 cut(s) 641
BsaAI YACGTR 1 cut(s) 1457
BsaBI GATNNNNATC 2 cut(s) 552, 1616
BsaI GGTCTC 1 cut(s) 741
BsaJI CCNNGG 3 cut(s) 1079, 1080, 1322
Bsc4I CCNNNNNNNGG 2 cut(s) 347, 757
Bse118I RCCGGY 2 cut(s) 62, 119
Bse1I ACTGG 8 cut(s) 83, 353, 846, 947, 981, 1193, 1358, 1412
Bse3DI GCAATG 2 cut(s) 183, 1012
Bse8I GATNNNNATC 2 cut(s) 552, 1616
BseBI CCWGG 2 cut(s) 819, 1081
BseDI CCNNGG 3 cut(s) 1079, 1080, 1322
BseGI GGATG 1 cut(s) 1051
BseJI GATNNNNATC 2 cut(s) 552, 1616
BseLI CCNNNNNNNGG 2 cut(s) 347, 757
BseMI GCAATG 2 cut(s) 183, 1012
BseMII CTCAG 2 cut(s) 339, 868
BseNI ACTGG 8 cut(s) 83, 353, 846, 947, 981, 1193, 1358, 1412
BseRI GAGGAG 1 cut(s) 414
BseSI GKGCMC 1 cut(s) 950
BseYI CCCAGC 1 cut(s) 1037
BshFI GGCC 8 cut(s) 104, 169, 351, 761, 948, 980, 1225, 1433
BsiHKCI CYCGRG 1 cut(s) 1171
BsiSI CCGG 4 cut(s) 52, 63, 120, 640
BslFI GGGAC 2 cut(s) 1208, 1340
BslI CCNNNNNNNGG 2 cut(s) 347, 757
BsmAI GTCTC 3 cut(s) 741, 852, 1168
BsmFI GGGAC 2 cut(s) 1208, 1340
BsmI GAATGC 1 cut(s) 1582
BsnI GGCC 8 cut(s) 104, 169, 351, 761, 948, 980, 1225, 1433
Bso31I GGTCTC 1 cut(s) 741
BsoBI CYCGRG 1 cut(s) 1171
Bsp119I TTCGAA 1 cut(s) 574
Bsp120I GGGCCC 1 cut(s) 946
Bsp1286I GDGCHC 1 cut(s) 950
Bsp143I GATC 8 cut(s) 30, 151, 368, 523, 547, 553, 916, 1326
BspACI CCGC 3 cut(s) 878, 1168, 1192
BspANI GGCC 8 cut(s) 104, 169, 351, 761, 948, 980, 1225, 1433
BspCNI CTCAG 2 cut(s) 338, 867
BspHI TCATGA 2 cut(s) 708, 937
BspLI GGNNCC 5 cut(s) 103, 170, 947, 948, 1086
BspMI ACCTGC 1 cut(s) 1590
BspPI GGATC 3 cut(s) 25, 542, 1334
BspT104I TTCGAA 1 cut(s) 574
BspTI CTTAAG 1 cut(s) 311
BspTNI GGTCTC 1 cut(s) 741
BsrDI GCAATG 2 cut(s) 183, 1012
BsrFI RCCGGY 2 cut(s) 62, 119
BsrI ACTGG 8 cut(s) 83, 353, 846, 947, 981, 1193, 1358, 1412
BssAI RCCGGY 2 cut(s) 62, 119
BssECI CCNNGG 3 cut(s) 1079, 1080, 1322
BssMI GATC 8 cut(s) 30, 151, 368, 523, 547, 553, 916, 1326
BssNAI GTATAC 1 cut(s) 443
BssSI CACGAG 1 cut(s) 968
BssT1I CCWWGG 1 cut(s) 1322
Bst1107I GTATAC 1 cut(s) 443
Bst2BI CACGAG 1 cut(s) 968
Bst2UI CCWGG 2 cut(s) 819, 1081
Bst6I CTCTTC 1 cut(s) 310
BstAFI CTTAAG 1 cut(s) 311
BstBAI YACGTR 1 cut(s) 1457
BstBI TTCGAA 1 cut(s) 574
BstC8I GCNNGC 1 cut(s) 788
BstDEI CTNAG 3 cut(s) 325, 854, 1091
BstF5I GGATG 1 cut(s) 1051
BstH2I RGCGCY 1 cut(s) 1126
BstHHI GCGC 2 cut(s) 792, 1125
BstKTI GATC 8 cut(s) 33, 154, 371, 526, 550, 556, 919, 1329
BstMAI GTCTC 3 cut(s) 741, 852, 1168
BstMBI GATC 8 cut(s) 30, 151, 368, 523, 547, 553, 916, 1326
BstMWI GCNNNNNNNGC 2 cut(s) 1142, 1167
BstNI CCWGG 2 cut(s) 819, 1081
BstNSI RCATGY 6 cut(s) 166, 194, 409, 449, 790, 1156
BstSCI CCNGG 3 cut(s) 639, 817, 1079
BstSLI GKGCMC 1 cut(s) 950
BstZ17I GTATAC 1 cut(s) 443
BsuI GTATCC 2 cut(s) 897, 1142
BsuRI GGCC 8 cut(s) 104, 169, 351, 761, 948, 980, 1225, 1433
BtrI CACGTC 1 cut(s) 1399
BtsCI GGATG 1 cut(s) 1051
BtsI GCAGTG 1 cut(s) 1052
BtsIMutI CAGTG 3 cut(s) 839, 1052, 1365
BveI ACCTGC 1 cut(s) 1590
Cac8I GCNNGC 1 cut(s) 788
CciI TCATGA 2 cut(s) 708, 937
CfoI GCGC 2 cut(s) 792, 1125
Cfr10I RCCGGY 2 cut(s) 62, 119
Cfr13I GGNCC 8 cut(s) 102, 168, 350, 477, 760, 946, 947, 1223
CsiI ACCWGGT 1 cut(s) 817
Csp6I GTAC 3 cut(s) 668, 815, 1186
CviQI GTAC 3 cut(s) 668, 815, 1186
DdeI CTNAG 3 cut(s) 325, 854, 1091
DpnI GATC 8 cut(s) 32, 153, 370, 525, 549, 555, 918, 1328
DpnII GATC 8 cut(s) 30, 151, 368, 523, 547, 553, 916, 1326
EaeI YGGCCR 2 cut(s) 978, 1431
Eam1104I CTCTTC 1 cut(s) 310
EarI CTCTTC 1 cut(s) 310
EciI GGCGGA 1 cut(s) 1157
Eco130I CCWWGG 1 cut(s) 1322
Eco24I GRGCYC 1 cut(s) 950
Eco31I GGTCTC 1 cut(s) 741
Eco32I GATATC 1 cut(s) 1444
Eco47I GGWCC 1 cut(s) 477
Eco57I CTGAAG 3 cut(s) 555, 717, 1002
Eco88I CYCGRG 1 cut(s) 1171
EcoO109I RGGNCCY 3 cut(s) 102, 946, 947
EcoRII CCWGG 2 cut(s) 817, 1079
EcoRV GATATC 1 cut(s) 1444
EcoT14I CCWWGG 1 cut(s) 1322
EcoT22I ATGCAT 1 cut(s) 1158
EcoT38I GRGCYC 1 cut(s) 950
ErhI CCWWGG 1 cut(s) 1322
FalI AAGNNNNNCTT 2 cut(s) 749, 781
FaqI GGGAC 2 cut(s) 1208, 1340
FauI CCCGC 2 cut(s) 871, 1185
FauNDI CATATG 2 cut(s) 1269, 1572
FbaI TGATCA 1 cut(s) 523
FblI GTMKAC 1 cut(s) 442
FokI GGATG 1 cut(s) 1058
FriOI GRGCYC 1 cut(s) 950
FspBI CTAG 4 cut(s) 1236, 1323, 1403, 1630
GlaI GCGC 2 cut(s) 791, 1124
GsaI CCCAGC 1 cut(s) 1041
GsuI CTGGAG 1 cut(s) 1429
HaeII RGCGCY 1 cut(s) 1126
HaeIII GGCC 8 cut(s) 104, 169, 351, 761, 948, 980, 1225, 1433
HapII CCGG 4 cut(s) 52, 63, 120, 640
HhaI GCGC 2 cut(s) 792, 1125
Hin6I GCGC 2 cut(s) 790, 1123
HinP1I GCGC 2 cut(s) 790, 1123
HindIII AAGCTT 1 cut(s) 806
HpaII CCGG 4 cut(s) 52, 63, 120, 640
HphI GGTGA 1 cut(s) 1531
Hpy166II GTNNAC 5 cut(s) 443, 631, 824, 868, 1315
Hpy188I TCNGA 7 cut(s) 199, 234, 697, 857, 916, 1021, 1556
Hpy8I GTNNAC 5 cut(s) 443, 631, 824, 868, 1315
Hpy99I CGWCG 1 cut(s) 1400
HpyAV CCTTC 7 cut(s) 369, 638, 692, 1016, 1036, 1147, 1432
HpyCH4IV ACGT 2 cut(s) 1398, 1456
HpyF10VI GCNNNNNNNGC 2 cut(s) 1142, 1167
HpyF3I CTNAG 3 cut(s) 325, 854, 1091
HpySE526I ACGT 2 cut(s) 1398, 1456
HspAI GCGC 2 cut(s) 790, 1123
Ksp22I TGATCA 1 cut(s) 523
Kzo9I GATC 8 cut(s) 30, 151, 368, 523, 547, 553, 916, 1326
LmnI GCTCC 2 cut(s) 222, 597
MabI ACCWGGT 1 cut(s) 817
MaeI CTAG 4 cut(s) 1236, 1323, 1403, 1630
MaeII ACGT 2 cut(s) 1398, 1456
MaeIII GTNAC 4 cut(s) 725, 739, 1116, 1452
MalI GATC 8 cut(s) 32, 153, 370, 525, 549, 555, 918, 1328
MboI GATC 8 cut(s) 30, 151, 368, 523, 547, 553, 916, 1326
MboII GAAGA 3 cut(s) 297, 767, 1497
MfeI CAATTG 1 cut(s) 794
MhlI GDGCHC 1 cut(s) 950
MlsI TGGCCA 1 cut(s) 980
MluNI TGGCCA 1 cut(s) 980
MlyI GAGTC 2 cut(s) 261, 1173
Mox20I TGGCCA 1 cut(s) 980
Mph1103I ATGCAT 1 cut(s) 1158
MscI TGGCCA 1 cut(s) 980
MslI CAYNNNNRTG 2 cut(s) 678, 1496
Msp20I TGGCCA 1 cut(s) 980
MspCI CTTAAG 1 cut(s) 311
MspI CCGG 4 cut(s) 52, 63, 120, 640
MspR9I CCNGG 3 cut(s) 641, 819, 1081
MunI CAATTG 1 cut(s) 794
Mva1269I GAATGC 1 cut(s) 1582
MvaI CCWGG 2 cut(s) 819, 1081
MwoI GCNNNNNNNGC 2 cut(s) 1142, 1167
NciI CCSGG 1 cut(s) 641
NdeI CATATG 2 cut(s) 1269, 1572
NdeII GATC 8 cut(s) 30, 151, 368, 523, 547, 553, 916, 1326
NlaIV GGNNCC 5 cut(s) 103, 170, 947, 948, 1086
NmeAIII GCCGAG 1 cut(s) 1459
NmuCI GTSAC 2 cut(s) 739, 1116
NsiI ATGCAT 1 cut(s) 1158
NspI RCATGY 6 cut(s) 166, 194, 409, 449, 790, 1156
NspV TTCGAA 1 cut(s) 574
PaeI GCATGC 1 cut(s) 790
PagI TCATGA 2 cut(s) 708, 937
PasI CCCWGGG 1 cut(s) 1080
PciI ACATGT 3 cut(s) 162, 190, 445
PctI GAATGC 1 cut(s) 1582
PfeI GAWTC 8 cut(s) 203, 898, 1239, 1334, 1540, 1576, 1612, 1625
PflMI CCANNNNNTGG 1 cut(s) 347
PleI GAGTC 2 cut(s) 260, 1172
PpsI GAGTC 2 cut(s) 260, 1172
Ppu21I YACGTR 1 cut(s) 1457
PscI ACATGT 3 cut(s) 162, 190, 445
Psp6I CCWGG 2 cut(s) 817, 1079
PspFI CCCAGC 1 cut(s) 1037
PspGI CCWGG 2 cut(s) 817, 1079
PspN4I GGNNCC 5 cut(s) 103, 170, 947, 948, 1086
PspOMI GGGCCC 1 cut(s) 946
PspPI GGNCC 8 cut(s) 102, 168, 350, 477, 760, 946, 947, 1223
RsaI GTAC 3 cut(s) 669, 816, 1187
RsaNI GTAC 3 cut(s) 668, 815, 1186
RseI CAYNNNNRTG 2 cut(s) 678, 1496
Sau3AI GATC 8 cut(s) 30, 151, 368, 523, 547, 553, 916, 1326
Sau96I GGNCC 8 cut(s) 102, 168, 350, 477, 760, 946, 947, 1223
ScaI AGTACT 1 cut(s) 1187
SchI GAGTC 2 cut(s) 261, 1173
ScrFI CCNGG 3 cut(s) 641, 819, 1081
SduI GDGCHC 1 cut(s) 950
SexAI ACCWGGT 1 cut(s) 817
SfuI TTCGAA 1 cut(s) 574
SinI GGWCC 1 cut(s) 477
SmiMI CAYNNNNRTG 2 cut(s) 678, 1496
SmlI CTYRAG 2 cut(s) 311, 1181
SmoI CTYRAG 2 cut(s) 311, 1181
SphI GCATGC 1 cut(s) 790
SsiI CCGC 3 cut(s) 878, 1168, 1192
SspI AATATT 2 cut(s) 849, 1099
SspMI CTAG 4 cut(s) 1236, 1323, 1403, 1630
StyD4I CCNGG 3 cut(s) 639, 817, 1079
StyI CCWWGG 1 cut(s) 1322
TaiI ACGT 2 cut(s) 1401, 1459
TaqI TCGA 2 cut(s) 574, 1543
TatI WGTACW 1 cut(s) 1185
TfiI GAWTC 8 cut(s) 203, 898, 1239, 1334, 1540, 1576, 1612, 1625
TscAI CASTG 3 cut(s) 846, 1059, 1365
TseFI GTSAC 2 cut(s) 739, 1116
Tsp45I GTSAC 2 cut(s) 739, 1116
TspDTI ATGAA 9 cut(s) 17, 53, 460, 653, 697, 706, 1226, 1286, 1323
TspGWI ACGGA 1 cut(s) 1377
TspRI CASTG 3 cut(s) 846, 1059, 1365
Van91I CCANNNNNTGG 1 cut(s) 347
Vha464I CTTAAG 1 cut(s) 311
VpaK11BI GGWCC 1 cut(s) 477
XapI RAATTY 3 cut(s) 467, 684, 1415
XbaI TCTAGA 1 cut(s) 1235
XceI RCATGY 6 cut(s) 166, 194, 409, 449, 790, 1156
XmaJI CCTAGG 1 cut(s) 1322
XmiI GTMKAC 1 cut(s) 442
XspI CTAG 4 cut(s) 1236, 1323, 1403, 1630
ZrmI AGTACT 1 cut(s) 1187
Zsp2I ATGCAT 1 cut(s) 1158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.