RchiOBHm_Chr7g0235581

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0006790
Physical Location & Seq
Forward (+)
60335547 .. 60338478
2932 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21113

Sequence Viewer

Length: 1026 bp
ATGTCTGTTTTCAAAAGTGATGGGTCAAGGCCCATATTTCATGTACCTCATCTCAACGGAATTTATGCTTCTGAAGGATGGTTCATGAGGTTGATGGAGGGAAACAGGCAATTTGTCACAAGAGACCCAAAAAAGGCTCACTTATTTTATCTTCCTTACAGCATGCGCCAATTGGAGTTGAAGCTTTATGTACCTGGTTCACATCAAATTAAACCACTGGCAATATTCCTCAGAGACTATGTGAACATGATTGCTGGGAAGTATCCTTTCTGGAATTGCACACATGGGACAGATCATTTTCTTGTTGCTTGCCATGACTGGTACCAAATTCCTGATGATCTGGGCCTCACGCTTACTCAGCACGAGGAACTGGCCAACAATACAATAAAAGCTCTATGCAACGCTGACACCTCAGAAGGAGTTTTTGTTGCTGGGAAGGATGTTTCACTGCTAGAAACTAATATTAGGAACCCCAGGGTTCCCCTTAGAAATATTGGTGGATTAAGAGTGTCACAGCGCCCACTCCTTGCCTTCTTTGCAGGACGCATGCATGGCAGAGTCAGCCCAATACTTCTCAAGTACTGGCGGGACAAACATGAGGACATGAAAATCTTTGGGCCTCTGCCCTCTAGAATCTCCCGAAAGATGTCATATATCCAGCATATGAAGTCAAGTAAATTTTGTATTTGCCCAATGGGGTATGAAGTGAACAGCCCTAGGATCATTGAAGCCATATATTATGAGTGTGTCCCAGTGATAATTGCAGATAATTTCCCCCCTCCTTTGAGCGATGTGCTAGACTGGAGCAAATTTTCTGTTATTGTGGCTGAGAAGGATATCCCCAAGTTACGAGAGATTTTATTGGCTATTCCTATGAGAAGATACATGGCTATGCAAACAAATGTGAAACTGGTGAAAAGGCATTTTCTTTGGAATCGAAGGCCAATCAGATATGATTTATTCCATATGATTATGCATTCCATCTGGTTAAGCAGATTGAGCCAGATTCAAATCCCAGAATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

341

Amino Acids

39.77

Weight (kDa)

9.53

Isoelectric Point (pI)

48.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 17 - 287 6.1e-57 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 321
AccB1I GGYRCC 1 cut(s) 321
AciI CCGC 1 cut(s) 586
AclWI GGATC 1 cut(s) 728
AcoI YGGCCR 1 cut(s) 372
AcsI RAATTY 4 cut(s) 60, 327, 677, 809
AcuI CTGAAG 1 cut(s) 93
AfaI GTAC 4 cut(s) 45, 192, 323, 581
AfiI CCNNNNNNNGG 1 cut(s) 133
AgsI TTSAA 4 cut(s) 13, 181, 728, 1010
AjnI CCWGG 2 cut(s) 193, 473
AluBI AGCT 2 cut(s) 184, 392
AluI AGCT 2 cut(s) 184, 392
Alw26I GTCTC 2 cut(s) 117, 228
AlwI GGATC 1 cut(s) 728
AoxI GGCC 5 cut(s) 29, 343, 372, 617, 941
ApoI RAATTY 4 cut(s) 60, 327, 677, 809
Asp718I GGTACC 1 cut(s) 321
AspA2I CCTAGG 1 cut(s) 716
AspLEI GCGC 2 cut(s) 168, 519
AspS9I GGNCC 3 cut(s) 30, 343, 617
AsuHPI GGTGA 1 cut(s) 925
AvrII CCTAGG 1 cut(s) 716
BalI TGGCCA 1 cut(s) 374
BanI GGYRCC 1 cut(s) 321
BauI CACGAG 1 cut(s) 362
BccI CCATC 4 cut(s) 14, 72, 88, 989
BciT130I CCWGG 2 cut(s) 195, 475
BciVI GTATCC 1 cut(s) 273
BcoDI GTCTC 2 cut(s) 117, 228
BfaI CTAG 5 cut(s) 452, 630, 717, 797, 1024
BfoI RGCGCY 1 cut(s) 520
BfuI GTATCC 1 cut(s) 273
BlnI CCTAGG 1 cut(s) 716
BmcAI AGTACT 1 cut(s) 581
Bme1390I CCNGG 2 cut(s) 195, 475
BmgT120I GGNCC 3 cut(s) 30, 343, 617
BmiI GGNNCC 3 cut(s) 323, 470, 480
BmrFI CCNGG 2 cut(s) 195, 475
BmrI ACTGGG 1 cut(s) 746
BmuI ACTGGG 1 cut(s) 746
BpmI CTGGAG 1 cut(s) 823
BpuEI CTTGAG 1 cut(s) 560
BsaBI GATNNNNATC 1 cut(s) 1010
BsaI GGTCTC 1 cut(s) 117
BsaJI CCNNGG 3 cut(s) 473, 474, 716
BsaXI ACNNNNNCTCC 2 cut(s) 411, 441
Bsc4I CCNNNNNNNGG 1 cut(s) 133
Bse1I ACTGG 7 cut(s) 222, 323, 375, 587, 752, 806, 915
Bse8I GATNNNNATC 1 cut(s) 1010
BseBI CCWGG 2 cut(s) 195, 475
BseDI CCNNGG 3 cut(s) 473, 474, 716
BseGI GGATG 2 cut(s) 83, 445
BseJI GATNNNNATC 1 cut(s) 1010
BseLI CCNNNNNNNGG 1 cut(s) 133
BseMII CTCAG 4 cut(s) 244, 371, 426, 819
BseNI ACTGG 7 cut(s) 222, 323, 375, 587, 752, 806, 915
BseYI CCCAGC 2 cut(s) 254, 431
BshFI GGCC 5 cut(s) 31, 345, 374, 619, 943
BshNI GGYRCC 1 cut(s) 321
BslFI GGGAC 3 cut(s) 301, 602, 734
BslI CCNNNNNNNGG 1 cut(s) 133
BsmAI GTCTC 2 cut(s) 117, 228
BsmFI GGGAC 3 cut(s) 301, 602, 734
BsmI GAATGC 1 cut(s) 976
BsnI GGCC 5 cut(s) 31, 345, 374, 619, 943
Bso31I GGTCTC 1 cut(s) 117
Bsp143I GATC 3 cut(s) 292, 337, 720
BspACI CCGC 1 cut(s) 586
BspANI GGCC 5 cut(s) 31, 345, 374, 619, 943
BspCNI CTCAG 4 cut(s) 243, 370, 425, 820
BspHI TCATGA 1 cut(s) 84
BspLI GGNNCC 3 cut(s) 323, 470, 480
BspPI GGATC 1 cut(s) 728
BspT107I GGYRCC 1 cut(s) 321
BspTNI GGTCTC 1 cut(s) 117
BsrI ACTGG 7 cut(s) 222, 323, 375, 587, 752, 806, 915
BssECI CCNNGG 3 cut(s) 473, 474, 716
BssMI GATC 3 cut(s) 292, 337, 720
BssSI CACGAG 1 cut(s) 362
BssT1I CCWWGG 1 cut(s) 716
Bst2BI CACGAG 1 cut(s) 362
Bst2UI CCWGG 2 cut(s) 195, 475
BstC8I GCNNGC 3 cut(s) 164, 310, 548
BstDEI CTNAG 5 cut(s) 230, 357, 412, 485, 828
BstF5I GGATG 2 cut(s) 83, 445
BstH2I RGCGCY 1 cut(s) 520
BstHHI GCGC 2 cut(s) 168, 519
BstKTI GATC 3 cut(s) 295, 340, 723
BstMAI GTCTC 2 cut(s) 117, 228
BstMBI GATC 3 cut(s) 292, 337, 720
BstMWI GCNNNNNNNGC 5 cut(s) 358, 536, 552, 561, 999
BstNI CCWGG 2 cut(s) 195, 475
BstNSI RCATGY 2 cut(s) 166, 550
BstSCI CCNGG 2 cut(s) 193, 473
BsuI GTATCC 1 cut(s) 273
BsuRI GGCC 5 cut(s) 31, 345, 374, 619, 943
BtgZI GCGATG 1 cut(s) 804
BtsCI GGATG 2 cut(s) 83, 445
BtsI GCAGTG 1 cut(s) 446
BtsIMutI CAGTG 3 cut(s) 215, 446, 759
Cac8I GCNNGC 3 cut(s) 164, 310, 548
CciI TCATGA 1 cut(s) 84
CfoI GCGC 2 cut(s) 168, 519
Cfr13I GGNCC 3 cut(s) 30, 343, 617
CseI GACGC 1 cut(s) 552
CsiI ACCWGGT 1 cut(s) 193
Csp6I GTAC 4 cut(s) 44, 191, 322, 580
CviQI GTAC 4 cut(s) 44, 191, 322, 580
DdeI CTNAG 5 cut(s) 230, 357, 412, 485, 828
DpnI GATC 3 cut(s) 294, 339, 722
DpnII GATC 3 cut(s) 292, 337, 720
EaeI YGGCCR 1 cut(s) 372
Eco130I CCWWGG 1 cut(s) 716
Eco31I GGTCTC 1 cut(s) 117
Eco32I GATATC 1 cut(s) 838
Eco57I CTGAAG 1 cut(s) 93
EcoRII CCWGG 2 cut(s) 193, 473
EcoRV GATATC 1 cut(s) 838
EcoT14I CCWWGG 1 cut(s) 716
EcoT22I ATGCAT 2 cut(s) 552, 978
ErhI CCWWGG 1 cut(s) 716
FalI AAGNNNNNCTT 2 cut(s) 125, 157
FaqI GGGAC 3 cut(s) 301, 602, 734
FauI CCCGC 1 cut(s) 579
FauNDI CATATG 2 cut(s) 663, 966
FokI GGATG 2 cut(s) 90, 452
FspBI CTAG 5 cut(s) 452, 630, 717, 797, 1024
GlaI GCGC 2 cut(s) 167, 518
GsaI CCCAGC 2 cut(s) 258, 435
GsuI CTGGAG 1 cut(s) 823
HaeII RGCGCY 1 cut(s) 520
HaeIII GGCC 5 cut(s) 31, 345, 374, 619, 943
HgaI GACGC 1 cut(s) 552
HhaI GCGC 2 cut(s) 168, 519
Hin6I GCGC 2 cut(s) 166, 517
HinP1I GCGC 2 cut(s) 166, 517
HindIII AAGCTT 1 cut(s) 182
HinfI GANTC 5 cut(s) 558, 633, 934, 1006, 1019
HphI GGTGA 1 cut(s) 925
Hpy166II GTNNAC 3 cut(s) 200, 244, 709
Hpy188I TCNGA 4 cut(s) 73, 233, 415, 950
Hpy188III TCNNGA 5 cut(s) 85, 271, 332, 630, 639
Hpy8I GTNNAC 3 cut(s) 200, 244, 709
HpyAV CCTTC 6 cut(s) 68, 410, 430, 541, 826, 933
HpyCH4V TGCA 7 cut(s) 279, 399, 539, 550, 764, 895, 976
HpyF10VI GCNNNNNNNGC 5 cut(s) 358, 536, 552, 561, 999
HpyF3I CTNAG 5 cut(s) 230, 357, 412, 485, 828
HspAI GCGC 2 cut(s) 166, 517
KpnI GGTACC 1 cut(s) 325
Kzo9I GATC 3 cut(s) 292, 337, 720
LmnI GCTCC 1 cut(s) 804
MabI ACCWGGT 1 cut(s) 193
MaeI CTAG 5 cut(s) 452, 630, 717, 797, 1024
MaeIII GTNAC 3 cut(s) 115, 510, 846
MalI GATC 3 cut(s) 294, 339, 722
MboI GATC 3 cut(s) 292, 337, 720
MboII GAAGA 2 cut(s) 143, 891
MfeI CAATTG 1 cut(s) 170
MlsI TGGCCA 1 cut(s) 374
MluNI TGGCCA 1 cut(s) 374
MlyI GAGTC 1 cut(s) 567
Mox20I TGGCCA 1 cut(s) 374
Mph1103I ATGCAT 2 cut(s) 552, 978
MscI TGGCCA 1 cut(s) 374
MseI TTAA 3 cut(s) 210, 503, 989
MslI CAYNNNNRTG 1 cut(s) 890
Msp20I TGGCCA 1 cut(s) 374
MspR9I CCNGG 2 cut(s) 195, 475
MunI CAATTG 1 cut(s) 170
Mva1269I GAATGC 1 cut(s) 976
MvaI CCWGG 2 cut(s) 195, 475
MwoI GCNNNNNNNGC 5 cut(s) 358, 536, 552, 561, 999
NdeI CATATG 2 cut(s) 663, 966
NdeII GATC 3 cut(s) 292, 337, 720
NlaIV GGNNCC 3 cut(s) 323, 470, 480
NmuCI GTSAC 2 cut(s) 115, 510
NsiI ATGCAT 2 cut(s) 552, 978
NspI RCATGY 2 cut(s) 166, 550
PaeI GCATGC 2 cut(s) 166, 550
PagI TCATGA 1 cut(s) 84
PasI CCCWGGG 1 cut(s) 474
PctI GAATGC 1 cut(s) 976
PfeI GAWTC 4 cut(s) 633, 934, 1006, 1019
PleI GAGTC 1 cut(s) 566
PpsI GAGTC 1 cut(s) 566
Psp6I CCWGG 2 cut(s) 193, 473
PspFI CCCAGC 2 cut(s) 254, 431
PspGI CCWGG 2 cut(s) 193, 473
PspN4I GGNNCC 3 cut(s) 323, 470, 480
PspPI GGNCC 3 cut(s) 30, 343, 617
RsaI GTAC 4 cut(s) 45, 192, 323, 581
RsaNI GTAC 4 cut(s) 44, 191, 322, 580
RseI CAYNNNNRTG 1 cut(s) 890
SaqAI TTAA 3 cut(s) 210, 503, 989
Sau3AI GATC 3 cut(s) 292, 337, 720
Sau96I GGNCC 3 cut(s) 30, 343, 617
ScaI AGTACT 1 cut(s) 581
SchI GAGTC 1 cut(s) 567
ScrFI CCNGG 2 cut(s) 195, 475
SetI ASST 6 cut(s) 49, 92, 186, 196, 394, 413
SexAI ACCWGGT 1 cut(s) 193
SmiMI CAYNNNNRTG 1 cut(s) 890
SmlI CTYRAG 1 cut(s) 575
SmoI CTYRAG 1 cut(s) 575
SphI GCATGC 2 cut(s) 166, 550
SsiI CCGC 1 cut(s) 586
SspI AATATT 3 cut(s) 225, 463, 493
SspMI CTAG 5 cut(s) 452, 630, 717, 797, 1024
StyD4I CCNGG 2 cut(s) 193, 473
StyI CCWWGG 1 cut(s) 716
TaqI TCGA 1 cut(s) 937
TatI WGTACW 1 cut(s) 579
TfiI GAWTC 4 cut(s) 633, 934, 1006, 1019
Tru1I TTAA 3 cut(s) 210, 503, 989
Tru9I TTAA 3 cut(s) 210, 503, 989
TscAI CASTG 3 cut(s) 222, 453, 759
TseFI GTSAC 2 cut(s) 115, 510
Tsp45I GTSAC 2 cut(s) 115, 510
TspDTI ATGAA 5 cut(s) 29, 73, 620, 680, 717
TspGWI ACGGA 1 cut(s) 72
TspRI CASTG 3 cut(s) 222, 453, 759
XapI RAATTY 4 cut(s) 60, 327, 677, 809
XbaI TCTAGA 1 cut(s) 629
XceI RCATGY 2 cut(s) 166, 550
XmaJI CCTAGG 1 cut(s) 716
XspI CTAG 5 cut(s) 452, 630, 717, 797, 1024
ZrmI AGTACT 1 cut(s) 581
Zsp2I ATGCAT 2 cut(s) 552, 978
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.