Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0006790

Physical Location & Seq

Genomic Coordinates Forward (+)

17490093 .. 17495299

Gene Structure 5207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG208000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGAGAGAGTTATTGCAGAGCTTTGCTGTGATCATAATGAAAGAGTTTTTCCGGCTCTGTGCTGGGTTAAAAATTGACTGGAAAAGGTTGATCTTTGCTGGGGCCTTTATGACAACAGCCGGTGTGATTCTGCAAATGTTTCTACTTAATGATCCGCTTGACATGTGGTCCCTCTCTCTACCCATTGCAAATGTGTCAGACGAATCGTTGAAAAGTATCAGGAGCTTTAATCAGACCTTTAGTGAGGGAAGGGTCAAAAGATTGGAACTCATTTCTGCTGATGTTCCCATTGTTCCACCAAACTCTTCTCTTAAGTTGAATCTCTCAATTCCAGTTATGCCATATATTGGCACAGTTCCTACAGGGAGATCAAGAAGGAGAAATAAAGGTGGAAATGTAGATAACATGTCAAAGGTCATACCTCCTCCTGACCCTCCACGTATACATGTGCCTTATCGTTTGCAGAAATTCGTTTGGTCCTTGACACCCAATGAGGCACTTGTGTATGCGAAGAAAGAGATTGATCATGCCCCTGAAGTTATTGATGATCCTTATCTATATGCCCCTTTATTTCGAAATATGTCTGTTTTCAAAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

199

Amino Acids

22.66

Weight (kDa)

9.75

Isoelectric Point (pI)

53.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006790)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16745 AT4G16745
fragaria_vesca	FvH4_5g19390 FvH4_5g19390
malus_domestica	MD04G1060100.v1.1
prunus_persica	Prupe.5G065600_v2.0.a1 Prupe.5G065600_v2.0.a1 Prupe.5G065600_v2.0.a1 Prupe.5G065600_v2.0.a1 Prupe.5G065600_v2.0.a1
pyrus_communis	pycom04g05360
rosa_chinensis	RchiOBHm_Chr7g0203891 RchiOBHm_Chr7g0203901 RchiOBHm_Chr7g0235581
rosa_laevigata	RLG00000003250 RLG00000003501 RLG00000028569
rosa_multiflora	Rmu_co8265539.1_g000001
rosa_roxburghii	Rroxscaffold_3G00253480
rosa_rugosa	Rorug07G0079100
rosa_samantha	Rh1DG217100 Rh7AG209100 Rh7BG208000 Rh7CG221500 Rh7DG216100
rosa_wichuraiana	Rw7G018220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	347
AccI	GTMKAC	1 cut(s)	442
AciI	CCGC	1 cut(s)	155
AclWI	GGATC	2 cut(s)	146, 542
AcsI	RAATTY	1 cut(s)	467
AcuI	CTGAAG	1 cut(s)	555
AfiI	CCNNNNNNNGG	1 cut(s)	347
AflII	CTTAAG	1 cut(s)	311
AflIII	ACRYGT	3 cut(s)	162, 405, 445
AgsI	TTSAA	3 cut(s)	211, 319, 592
AhdI	GACNNNNNGTC	1 cut(s)	166
AluBI	AGCT	2 cut(s)	21, 225
AluI	AGCT	2 cut(s)	21, 225
AlwI	GGATC	2 cut(s)	146, 542
AoxI	GGCC	1 cut(s)	102
ApoI	RAATTY	1 cut(s)	467
AspS9I	GGNCC	3 cut(s)	102, 168, 477
AsuII	TTCGAA	1 cut(s)	574
AvaII	GGWCC	2 cut(s)	168, 477
BclI	TGATCA	2 cut(s)	30, 523
BfmI	CTRYAG	1 cut(s)	360
BfrI	CTTAAG	1 cut(s)	311
Bme18I	GGWCC	2 cut(s)	168, 477
BmeRI	GACNNNNNGTC	1 cut(s)	166
BmgT120I	GGNCC	3 cut(s)	102, 168, 477
BmiI	GGNNCC	2 cut(s)	103, 170
Bpu14I	TTCGAA	1 cut(s)	574
BsaAI	YACGTR	1 cut(s)	440
BsaBI	GATNNNNATC	1 cut(s)	552
Bsc4I	CCNNNNNNNGG	1 cut(s)	347
Bse118I	RCCGGY	1 cut(s)	119
Bse1I	ACTGG	2 cut(s)	83, 332
Bse3DI	GCAATG	1 cut(s)	183
Bse8I	GATNNNNATC	1 cut(s)	552
BseJI	GATNNNNATC	1 cut(s)	552
BseLI	CCNNNNNNNGG	1 cut(s)	347
BseMI	GCAATG	1 cut(s)	183
BseNI	ACTGG	2 cut(s)	83, 332
BseRI	GAGGAG	1 cut(s)	414
BseYI	CCCAGC	2 cut(s)	62, 98
BshFI	GGCC	1 cut(s)	104
BsiSI	CCGG	2 cut(s)	52, 120
BslFI	GGGAC	1 cut(s)	154
BslI	CCNNNNNNNGG	1 cut(s)	347
BsmFI	GGGAC	1 cut(s)	154
BsnI	GGCC	1 cut(s)	104
Bsp119I	TTCGAA	1 cut(s)	574
Bsp143I	GATC	6 cut(s)	30, 90, 151, 368, 523, 547
BspACI	CCGC	1 cut(s)	155
BspANI	GGCC	1 cut(s)	104
BspLI	GGNNCC	2 cut(s)	103, 170
BspPI	GGATC	2 cut(s)	146, 542
BspT104I	TTCGAA	1 cut(s)	574
BspTI	CTTAAG	1 cut(s)	311
BsrDI	GCAATG	1 cut(s)	183
BsrFI	RCCGGY	1 cut(s)	119
BsrI	ACTGG	2 cut(s)	83, 332
BssAI	RCCGGY	1 cut(s)	119
BssMI	GATC	6 cut(s)	30, 90, 151, 368, 523, 547
BssNAI	GTATAC	1 cut(s)	443
Bst1107I	GTATAC	1 cut(s)	443
Bst4CI	ACNGT	1 cut(s)	355
Bst6I	CTCTTC	1 cut(s)	310
BstAFI	CTTAAG	1 cut(s)	311
BstBAI	YACGTR	1 cut(s)	440
BstBI	TTCGAA	1 cut(s)	574
BstKTI	GATC	6 cut(s)	33, 93, 154, 371, 526, 550
BstMBI	GATC	6 cut(s)	30, 90, 151, 368, 523, 547
BstNSI	RCATGY	3 cut(s)	166, 409, 449
BstSFI	CTRYAG	1 cut(s)	360
BstZ17I	GTATAC	1 cut(s)	443
BsuRI	GGCC	1 cut(s)	104
Cfr10I	RCCGGY	1 cut(s)	119
Cfr13I	GGNCC	3 cut(s)	102, 168, 477
CviAII	CATG	4 cut(s)	163, 406, 446, 527
CviJI	RGCY	5 cut(s)	21, 55, 104, 119, 225
CviKI_1	RGCY	5 cut(s)	21, 55, 104, 119, 225
DpnI	GATC	6 cut(s)	32, 92, 153, 370, 525, 549
DpnII	GATC	6 cut(s)	30, 90, 151, 368, 523, 547
DriI	GACNNNNNGTC	1 cut(s)	166
Eam1104I	CTCTTC	1 cut(s)	310
Eam1105I	GACNNNNNGTC	1 cut(s)	166
EarI	CTCTTC	1 cut(s)	310
Eco47I	GGWCC	2 cut(s)	168, 477
Eco57I	CTGAAG	1 cut(s)	555
EcoO109I	RGGNCCY	1 cut(s)	102
FaeI	CATG	4 cut(s)	166, 409, 449, 530
FaqI	GGGAC	1 cut(s)	154
FatI	CATG	4 cut(s)	162, 405, 445, 526
FbaI	TGATCA	2 cut(s)	30, 523
FblI	GTMKAC	1 cut(s)	442
GsaI	CCCAGC	2 cut(s)	66, 102
HaeIII	GGCC	1 cut(s)	104
HapII	CCGG	2 cut(s)	52, 120
Hin1II	CATG	4 cut(s)	166, 409, 449, 530
HinfI	GANTC	3 cut(s)	127, 203, 319
HpaII	CCGG	2 cut(s)	52, 120
Hpy166II	GTNNAC	1 cut(s)	443
Hpy188I	TCNGA	2 cut(s)	199, 234
Hpy188III	TCNNGA	3 cut(s)	220, 372, 428
Hpy8I	GTNNAC	1 cut(s)	443
HpyAV	CCTTC	2 cut(s)	243, 369
HpyCH4III	ACNGT	1 cut(s)	355
HpyCH4IV	ACGT	1 cut(s)	439
HpyCH4V	TGCA	4 cut(s)	16, 133, 188, 463
HpySE526I	ACGT	1 cut(s)	439
Hsp92II	CATG	4 cut(s)	166, 409, 449, 530
Ksp22I	TGATCA	2 cut(s)	30, 523
Kzo9I	GATC	6 cut(s)	30, 90, 151, 368, 523, 547
LmnI	GCTCC	1 cut(s)	222
MaeII	ACGT	1 cut(s)	439
MalI	GATC	6 cut(s)	32, 92, 153, 370, 525, 549
MboI	GATC	6 cut(s)	30, 90, 151, 368, 523, 547
MboII	GAAGA	2 cut(s)	297, 523
MluCI	AATT	3 cut(s)	72, 327, 467
MnlI	CCTC	6 cut(s)	182, 238, 432, 435, 444, 487
MseI	TTAA	4 cut(s)	68, 147, 228, 312
MspCI	CTTAAG	1 cut(s)	311
MspI	CCGG	2 cut(s)	52, 120
NdeII	GATC	6 cut(s)	30, 90, 151, 368, 523, 547
NlaIII	CATG	4 cut(s)	166, 409, 449, 530
NlaIV	GGNNCC	2 cut(s)	103, 170
NspI	RCATGY	3 cut(s)	166, 409, 449
NspV	TTCGAA	1 cut(s)	574
PciI	ACATGT	3 cut(s)	162, 405, 445
PfeI	GAWTC	3 cut(s)	127, 203, 319
PflMI	CCANNNNNTGG	1 cut(s)	347
Ppu21I	YACGTR	1 cut(s)	440
PscI	ACATGT	3 cut(s)	162, 405, 445
PspFI	CCCAGC	2 cut(s)	62, 98
PspN4I	GGNNCC	2 cut(s)	103, 170
PspPI	GGNCC	3 cut(s)	102, 168, 477
SaqAI	TTAA	4 cut(s)	68, 147, 228, 312
Sau3AI	GATC	6 cut(s)	30, 90, 151, 368, 523, 547
Sau96I	GGNCC	3 cut(s)	102, 168, 477
SetI	ASST	9 cut(s)	23, 89, 227, 239, 391, 417, 424, 442, 599
SfcI	CTRYAG	1 cut(s)	360
SfuI	TTCGAA	1 cut(s)	574
SinI	GGWCC	2 cut(s)	168, 477
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
Sse9I	AATT	3 cut(s)	72, 327, 467
SsiI	CCGC	1 cut(s)	155
TaaI	ACNGT	1 cut(s)	355
TaiI	ACGT	1 cut(s)	442
TaqI	TCGA	1 cut(s)	574
TasI	AATT	3 cut(s)	72, 327, 467
TfiI	GAWTC	3 cut(s)	127, 203, 319
Tru1I	TTAA	4 cut(s)	68, 147, 228, 312
Tru9I	TTAA	4 cut(s)	68, 147, 228, 312
TspDTI	ATGAA	1 cut(s)	53
Van91I	CCANNNNNTGG	1 cut(s)	347
Vha464I	CTTAAG	1 cut(s)	311
VpaK11BI	GGWCC	2 cut(s)	168, 477
XapI	RAATTY	1 cut(s)	467
XceI	RCATGY	3 cut(s)	166, 409, 449
XmiI	GTMKAC	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.