Rh1DG217100

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0006790
Physical Location & Seq
Reverse (-)
42408845 .. 42411012
2168 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG217100.1

Sequence Viewer

Length: 1053 bp
ATGTCTGTTTTCAAAAGGAGCTATGAGTTGATGGAATTGATACTTAAAGTTTACATTTACAGTGATGGGTCAAGGCCCATATTTCATGTACCTCATCTCAACGGAATTTATGCTTCTGAAGGATGGTTCATGAGGTTGATGGAGGGAAACAGGCAATTTGTCACAAGAGACCCAGAAAAGGCTCACTTATTTTATCTTCCTTACAGCATGCGCCAATTGGAGTTGAAGCTTTATGTACCTGGTTCACATCAAATTAAACCACTGGCAATATTCCTCAGAGACTATGTGAACATGATTGCTGGGAAGTATCCTTTCTGGAATCGCACACATGGGACAGATCATTTTCTTGTTGCTTGCCATGACTGGGGGCCTTACACGCTTACTCAGCACGAGGAACTGGCCAACAATACAATAAAAGCTCTATGCAACGCTGACACCTCAGAAGGAGTTTTTGTTGCTGGGAAGGATGTTTCACTGCCAGAAACTAATATTAGGAACCCCAGGGTTCCCCTTAGAAATATTGGTGGATTAAGAGTGTCACAGCGCCCACTCCTTGCCTTCTTTGCAGGACGCATGCATGGCAGAGTCCGCCCAATACTTCTCAAGTACTGGCAGGACAAACATGAGGACATGAAAATCTATGGGCCTCTGCCCTCTAGAATCTCCCGAAAGATGTCATATATCCAGCATATGAAGTCAAGTAAATTTTGTATTTGCCCAATGGGGTATGAAGTGAACAGCCCTAGGATCATTGAAGCCATATATTATGAGTGTGTCCCAGTGATAATTGCAGATAATTTCCCCCCTCCTTTGAGCGACGTGCTAGACTGGAGCAAATTTTCTGTTATTGTGGCTGAGAAGGATATCCCCAAGTTACGAGAGATTTTATTGGCTATTCCTATGAGAAGATACATGGCTATGCAAACAAATGTGAAACTGGTGAAAAGGCATTTTCTTTGGAATCGAAGGCCAATCAGATATGATTTATTCCATATGATTCTGCATTCCATCTGGTTAAGCAGATTGAGCCAGATTCAAATCCCAGAATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

350

Amino Acids

41.07

Weight (kDa)

9.57

Isoelectric Point (pI)

48.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 15 - 296 1.3e-65 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 589
AclWI GGATC 1 cut(s) 755
AcoI YGGCCR 1 cut(s) 399
AcsI RAATTY 3 cut(s) 105, 704, 836
AcuI CTGAAG 1 cut(s) 138
AfaI GTAC 3 cut(s) 90, 237, 608
AfiI CCNNNNNNNGG 2 cut(s) 178, 364
AgsI TTSAA 4 cut(s) 13, 226, 755, 1037
AjiI CACGTC 1 cut(s) 820
AjnI CCWGG 2 cut(s) 238, 500
AluBI AGCT 3 cut(s) 21, 229, 419
AluI AGCT 3 cut(s) 21, 229, 419
Alw26I GTCTC 2 cut(s) 162, 273
AlwI GGATC 1 cut(s) 755
AoxI GGCC 5 cut(s) 74, 368, 399, 644, 968
ApoI RAATTY 3 cut(s) 105, 704, 836
AspA2I CCTAGG 1 cut(s) 743
AspLEI GCGC 2 cut(s) 213, 546
AspS9I GGNCC 3 cut(s) 75, 368, 644
AsuHPI GGTGA 1 cut(s) 952
AvrII CCTAGG 1 cut(s) 743
BalI TGGCCA 1 cut(s) 401
BauI CACGAG 1 cut(s) 389
BccI CCATC 5 cut(s) 25, 59, 117, 133, 1016
BciT130I CCWGG 2 cut(s) 240, 502
BciVI GTATCC 1 cut(s) 318
BcoDI GTCTC 2 cut(s) 162, 273
BfaI CTAG 4 cut(s) 657, 744, 824, 1051
BfoI RGCGCY 1 cut(s) 547
BfuI GTATCC 1 cut(s) 318
BlnI CCTAGG 1 cut(s) 743
BmcAI AGTACT 1 cut(s) 608
Bme1390I CCNGG 2 cut(s) 240, 502
BmgBI CACGTC 1 cut(s) 820
BmgT120I GGNCC 3 cut(s) 75, 368, 644
BmiI GGNNCC 3 cut(s) 369, 497, 507
BmrFI CCNGG 2 cut(s) 240, 502
BmrI ACTGGG 2 cut(s) 373, 773
BmuI ACTGGG 2 cut(s) 373, 773
BpmI CTGGAG 1 cut(s) 850
BpuEI CTTGAG 1 cut(s) 587
BsaBI GATNNNNATC 1 cut(s) 1037
BsaI GGTCTC 1 cut(s) 162
BsaJI CCNNGG 3 cut(s) 500, 501, 743
BsaXI ACNNNNNCTCC 2 cut(s) 438, 468
Bsc4I CCNNNNNNNGG 2 cut(s) 178, 364
Bse1I ACTGG 7 cut(s) 267, 368, 402, 614, 779, 833, 942
Bse8I GATNNNNATC 1 cut(s) 1037
BseBI CCWGG 2 cut(s) 240, 502
BseDI CCNNGG 3 cut(s) 500, 501, 743
BseGI GGATG 2 cut(s) 128, 472
BseJI GATNNNNATC 1 cut(s) 1037
BseLI CCNNNNNNNGG 2 cut(s) 178, 364
BseMII CTCAG 4 cut(s) 289, 398, 453, 846
BseNI ACTGG 7 cut(s) 267, 368, 402, 614, 779, 833, 942
BseYI CCCAGC 2 cut(s) 299, 458
BshFI GGCC 5 cut(s) 76, 370, 401, 646, 970
BslFI GGGAC 2 cut(s) 346, 761
BslI CCNNNNNNNGG 2 cut(s) 178, 364
BsmAI GTCTC 2 cut(s) 162, 273
BsmFI GGGAC 2 cut(s) 346, 761
BsmI GAATGC 1 cut(s) 1003
BsnI GGCC 5 cut(s) 76, 370, 401, 646, 970
Bso31I GGTCTC 1 cut(s) 162
Bsp143I GATC 2 cut(s) 337, 747
BspACI CCGC 1 cut(s) 589
BspANI GGCC 5 cut(s) 76, 370, 401, 646, 970
BspCNI CTCAG 4 cut(s) 288, 397, 452, 847
BspHI TCATGA 1 cut(s) 129
BspLI GGNNCC 3 cut(s) 369, 497, 507
BspPI GGATC 1 cut(s) 755
BspTNI GGTCTC 1 cut(s) 162
BsrI ACTGG 7 cut(s) 267, 368, 402, 614, 779, 833, 942
BssECI CCNNGG 3 cut(s) 500, 501, 743
BssMI GATC 2 cut(s) 337, 747
BssSI CACGAG 1 cut(s) 389
BssT1I CCWWGG 1 cut(s) 743
Bst2BI CACGAG 1 cut(s) 389
Bst2UI CCWGG 2 cut(s) 240, 502
Bst4CI ACNGT 1 cut(s) 62
BstC8I GCNNGC 3 cut(s) 209, 355, 575
BstDEI CTNAG 5 cut(s) 275, 384, 439, 512, 855
BstF5I GGATG 2 cut(s) 128, 472
BstH2I RGCGCY 1 cut(s) 547
BstHHI GCGC 2 cut(s) 213, 546
BstKTI GATC 2 cut(s) 340, 750
BstMAI GTCTC 2 cut(s) 162, 273
BstMBI GATC 2 cut(s) 337, 747
BstMWI GCNNNNNNNGC 6 cut(s) 376, 385, 563, 579, 588, 1026
BstNI CCWGG 2 cut(s) 240, 502
BstNSI RCATGY 2 cut(s) 211, 577
BstSCI CCNGG 2 cut(s) 238, 500
BsuI GTATCC 1 cut(s) 318
BsuRI GGCC 5 cut(s) 76, 370, 401, 646, 970
BtrI CACGTC 1 cut(s) 820
BtsCI GGATG 2 cut(s) 128, 472
BtsI GCAGTG 1 cut(s) 473
BtsIMutI CAGTG 4 cut(s) 67, 260, 473, 786
Cac8I GCNNGC 3 cut(s) 209, 355, 575
CciI TCATGA 1 cut(s) 129
CfoI GCGC 2 cut(s) 213, 546
Cfr13I GGNCC 3 cut(s) 75, 368, 644
CseI GACGC 1 cut(s) 579
CsiI ACCWGGT 1 cut(s) 238
Csp6I GTAC 3 cut(s) 89, 236, 607
CviQI GTAC 3 cut(s) 89, 236, 607
DdeI CTNAG 5 cut(s) 275, 384, 439, 512, 855
DpnI GATC 2 cut(s) 339, 749
DpnII GATC 2 cut(s) 337, 747
EaeI YGGCCR 1 cut(s) 399
EciI GGCGGA 1 cut(s) 578
Eco130I CCWWGG 1 cut(s) 743
Eco31I GGTCTC 1 cut(s) 162
Eco32I GATATC 1 cut(s) 865
Eco57I CTGAAG 1 cut(s) 138
EcoO109I RGGNCCY 1 cut(s) 368
EcoRII CCWGG 2 cut(s) 238, 500
EcoRV GATATC 1 cut(s) 865
EcoT14I CCWWGG 1 cut(s) 743
EcoT22I ATGCAT 1 cut(s) 579
ErhI CCWWGG 1 cut(s) 743
FalI AAGNNNNNCTT 2 cut(s) 170, 202
FaqI GGGAC 2 cut(s) 346, 761
FauNDI CATATG 2 cut(s) 690, 993
FokI GGATG 2 cut(s) 135, 479
FspBI CTAG 4 cut(s) 657, 744, 824, 1051
GlaI GCGC 2 cut(s) 212, 545
GsaI CCCAGC 2 cut(s) 303, 462
GsuI CTGGAG 1 cut(s) 850
HaeII RGCGCY 1 cut(s) 547
HaeIII GGCC 5 cut(s) 76, 370, 401, 646, 970
HgaI GACGC 1 cut(s) 579
HhaI GCGC 2 cut(s) 213, 546
Hin6I GCGC 2 cut(s) 211, 544
HinP1I GCGC 2 cut(s) 211, 544
HindIII AAGCTT 1 cut(s) 227
HinfI GANTC 7 cut(s) 319, 585, 660, 961, 997, 1033, 1046
HphI GGTGA 1 cut(s) 952
Hpy166II GTNNAC 4 cut(s) 52, 245, 289, 736
Hpy188I TCNGA 4 cut(s) 118, 278, 442, 977
Hpy188III TCNNGA 4 cut(s) 130, 316, 657, 666
Hpy8I GTNNAC 4 cut(s) 52, 245, 289, 736
Hpy99I CGWCG 1 cut(s) 821
HpyAV CCTTC 6 cut(s) 113, 437, 457, 568, 853, 960
HpyCH4III ACNGT 1 cut(s) 62
HpyCH4IV ACGT 1 cut(s) 819
HpyCH4V TGCA 6 cut(s) 426, 566, 577, 791, 922, 1003
HpyF10VI GCNNNNNNNGC 6 cut(s) 376, 385, 563, 579, 588, 1026
HpyF3I CTNAG 5 cut(s) 275, 384, 439, 512, 855
HpySE526I ACGT 1 cut(s) 819
HspAI GCGC 2 cut(s) 211, 544
Kzo9I GATC 2 cut(s) 337, 747
LmnI GCTCC 2 cut(s) 18, 831
MabI ACCWGGT 1 cut(s) 238
MaeI CTAG 4 cut(s) 657, 744, 824, 1051
MaeII ACGT 1 cut(s) 819
MaeIII GTNAC 3 cut(s) 160, 537, 873
MalI GATC 2 cut(s) 339, 749
MboI GATC 2 cut(s) 337, 747
MboII GAAGA 2 cut(s) 188, 918
MfeI CAATTG 1 cut(s) 215
MlsI TGGCCA 1 cut(s) 401
MluCI AATT 9 cut(s) 35, 105, 155, 215, 252, 704, 786, 796, 836
MluNI TGGCCA 1 cut(s) 401
MlyI GAGTC 1 cut(s) 594
Mox20I TGGCCA 1 cut(s) 401
Mph1103I ATGCAT 1 cut(s) 579
MscI TGGCCA 1 cut(s) 401
MseI TTAA 4 cut(s) 45, 255, 530, 1016
MslI CAYNNNNRTG 1 cut(s) 917
Msp20I TGGCCA 1 cut(s) 401
MspR9I CCNGG 2 cut(s) 240, 502
MunI CAATTG 1 cut(s) 215
Mva1269I GAATGC 1 cut(s) 1003
MvaI CCWGG 2 cut(s) 240, 502
MwoI GCNNNNNNNGC 6 cut(s) 376, 385, 563, 579, 588, 1026
NdeI CATATG 2 cut(s) 690, 993
NdeII GATC 2 cut(s) 337, 747
NlaIV GGNNCC 3 cut(s) 369, 497, 507
NmuCI GTSAC 2 cut(s) 160, 537
NsiI ATGCAT 1 cut(s) 579
NspI RCATGY 2 cut(s) 211, 577
PaeI GCATGC 2 cut(s) 211, 577
PagI TCATGA 1 cut(s) 129
PasI CCCWGGG 1 cut(s) 501
PctI GAATGC 1 cut(s) 1003
PfeI GAWTC 6 cut(s) 319, 660, 961, 997, 1033, 1046
PleI GAGTC 1 cut(s) 593
PpsI GAGTC 1 cut(s) 593
Psp6I CCWGG 2 cut(s) 238, 500
PspFI CCCAGC 2 cut(s) 299, 458
PspGI CCWGG 2 cut(s) 238, 500
PspN4I GGNNCC 3 cut(s) 369, 497, 507
PspPI GGNCC 3 cut(s) 75, 368, 644
RsaI GTAC 3 cut(s) 90, 237, 608
RsaNI GTAC 3 cut(s) 89, 236, 607
RseI CAYNNNNRTG 1 cut(s) 917
SaqAI TTAA 4 cut(s) 45, 255, 530, 1016
Sau3AI GATC 2 cut(s) 337, 747
Sau96I GGNCC 3 cut(s) 75, 368, 644
ScaI AGTACT 1 cut(s) 608
SchI GAGTC 1 cut(s) 594
ScrFI CCNGG 2 cut(s) 240, 502
SetI ASST 8 cut(s) 23, 94, 137, 231, 241, 421, 440, 822
SexAI ACCWGGT 1 cut(s) 238
SmiMI CAYNNNNRTG 1 cut(s) 917
SmlI CTYRAG 1 cut(s) 602
SmoI CTYRAG 1 cut(s) 602
SphI GCATGC 2 cut(s) 211, 577
Sse9I AATT 9 cut(s) 35, 105, 155, 215, 252, 704, 786, 796, 836
SsiI CCGC 1 cut(s) 589
SspI AATATT 3 cut(s) 270, 490, 520
SspMI CTAG 4 cut(s) 657, 744, 824, 1051
StyD4I CCNGG 2 cut(s) 238, 500
StyI CCWWGG 1 cut(s) 743
TaaI ACNGT 1 cut(s) 62
TaiI ACGT 1 cut(s) 822
TaqI TCGA 1 cut(s) 964
TasI AATT 9 cut(s) 35, 105, 155, 215, 252, 704, 786, 796, 836
TatI WGTACW 1 cut(s) 606
TfiI GAWTC 6 cut(s) 319, 660, 961, 997, 1033, 1046
Tru1I TTAA 4 cut(s) 45, 255, 530, 1016
Tru9I TTAA 4 cut(s) 45, 255, 530, 1016
TscAI CASTG 4 cut(s) 67, 267, 480, 786
TseFI GTSAC 2 cut(s) 160, 537
Tsp45I GTSAC 2 cut(s) 160, 537
TspDTI ATGAA 5 cut(s) 74, 118, 647, 707, 744
TspGWI ACGGA 1 cut(s) 117
TspRI CASTG 4 cut(s) 67, 267, 480, 786
XapI RAATTY 3 cut(s) 105, 704, 836
XbaI TCTAGA 1 cut(s) 656
XceI RCATGY 2 cut(s) 211, 577
XmaJI CCTAGG 1 cut(s) 743
XspI CTAG 4 cut(s) 657, 744, 824, 1051
ZrmI AGTACT 1 cut(s) 608
Zsp2I ATGCAT 1 cut(s) 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.