Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009277

Physical Location & Seq

Genomic Coordinates Reverse (-)

9666439 .. 9668507

Gene Structure 2069 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G17240.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGCGTCTCGCTACAATTCCTACGATTCTAGATCATCCGTAACCTCCTCGATTCACTCAGATCTATCATCCTCCGCAGAATTCAAATCGAACAAGCCAATTTCATCGAAAGCCATTGTCAGATCCAAATCTTCCTACTTAACCAAAACAACGAAGCCCATAAAGCCTGATAGTAATCCTGGAAACCTCACTAATATGATGAAGAAGCTAATGGAAATGAAGAAATCTAATTCCAAGAGCAAGAGGGTCGAGCTTGTGATTCCCGAGGAACTGAAGAAAATTGATACTGGCAAAGGAGGAGGGAAGAGTACATTGGGAACATTGCAGAGGAAGCTATTCGGGAAGGAGAAGGTGAAGGCATTGACAGAGGTTAAGAGTAACACTAGGACATTGTCTATGGTTCTGCGAAGCGAAAGGGAGCTTCTGGGGATGAACAAGGACCAGGAGGTTGAAATAGCTGAGCTAAAGTTTCAGCTTGAAGAGAAGAACCGAGAAGTGGAGAAGTTGAAGGATCTGTGTCTGAAGCAAAGGGAAGAGATAAAGTCACTGAAGAGTGCGGTTCTGTTTCCGGATTCGATGAATAGTCAAATCAATCAAATGCAGGAGCTGAATCAGGCGAGAGAGATTATACCTAATCTTCAAAAGCAGGTCATTTCACTTAATGGACAGCTCCAATGCATTGCTCAAGACCTTGCTGAGGTGAAAGCGAACAAGTACTTGTCAGAAAGCTGTTACTGGCAAGCACAGACTTCTTCCTATGATTCACTGGAATTCAGCTCAGGTAGCCCTGATGGATTGGCTCTGGAAGATTTGAATCCATGCCTAACTCCTTATACCAAGAAGAAGCCCAAGGAGTATGAGAGGGTTGACTCAGCAGAAGAGAGTTTATCAGGGAGAAGCACTATAACAACAACAGGCGGTAAAGTCAAATCGAGTTCAAGAAGTGTAAAGATGTCAAGGAGCTCAGAGGGAAAGGCAGGGCAGAGATCAGAGGAGAGCAAAGGATGGTATAGAGGTGGGAGGATGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

343

Amino Acids

38.4

Weight (kDa)

9.53

Isoelectric Point (pI)

47.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17240 AT4G17240
fragaria_vesca	FvH4_3g00551 FvH4_3g00551 FvH4_3g00551 FvH4_3g00551
malus_domestica	MD00G1058000.v1.1 MD10G1336700.v1.1
prunus_persica	Prupe.4G006700_v2.0.a1
pyrus_communis	pycom05g32610 pycom10g28620
rosa_chinensis	RchiOBHm_Chr5g0000761
rosa_laevigata	RLG00000030893
rosa_multiflora	Rmu_sc0000255.1_g000006 Rmu_sc0011992.1_g000004
rosa_roxburghii	Rroxscaffold_1G00075470
rosa_rugosa	Rorug04G0386200
rosa_samantha	Rh5AG006300 Rh5BG008100 Rh5CG006800 Rh5DG006800
rosa_wichuraiana	Rw5G000640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	637
AccIII	TCCGGA	1 cut(s)	568
AciI	CCGC	3 cut(s)	75, 557, 918
AclWI	GGATC	2 cut(s)	117, 519
AcsI	RAATTY	2 cut(s)	80, 770
AcuI	CTGAAG	3 cut(s)	293, 542, 569
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	310, 716
AfiI	CCNNNNNNNGG	2 cut(s)	496, 697
AgsI	TTSAA	7 cut(s)	85, 452, 479, 508, 641, 814, 939
AjnI	CCWGG	2 cut(s)	178, 441
AjuI	GAANNNNNNNTTGG	2 cut(s)	296, 328
Alw21I	GWGCWC	1 cut(s)	965
Alw26I	GTCTC	1 cut(s)	12
AlwI	GGATC	2 cut(s)	117, 519
AlwNI	CAGNNNCTG	1 cut(s)	607
Ama87I	CYCGRG	1 cut(s)	263
Aor13HI	TCCGGA	1 cut(s)	568
ApoI	RAATTY	2 cut(s)	80, 770
Asp700I	GAANNNNTTC	1 cut(s)	335
AspS9I	GGNCC	1 cut(s)	439
AsuHPI	GGTGA	2 cut(s)	364, 712
AvaI	CYCGRG	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	439
BanII	GRGCYC	1 cut(s)	965
Bbv12I	GWGCWC	1 cut(s)	965
BbvCI	CCTCAGC	1 cut(s)	696
BccI	CCATC	2 cut(s)	785, 999
BcgI	CGANNNNNNTGC	2 cut(s)	229, 263
BciT130I	CCWGG	2 cut(s)	180, 443
BcoDI	GTCTC	1 cut(s)	12
BfaI	CTAG	2 cut(s)	30, 384
BfuAI	ACCTGC	1 cut(s)	637
BglII	AGATCT	1 cut(s)	61
BlpI	GCTNAGC	1 cut(s)	459
BmcAI	AGTACT	1 cut(s)	716
Bme1390I	CCNGG	2 cut(s)	180, 443
Bme18I	GGWCC	1 cut(s)	439
BmeT110I	CYCGRG	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	439
BmrFI	CCNGG	2 cut(s)	180, 443
Bpu10I	CCTNAGC	2 cut(s)	696, 778
Bpu1102I	GCTNAGC	1 cut(s)	459
BpuEI	CTTGAG	1 cut(s)	669
BsaBI	GATNNNNATC	3 cut(s)	127, 174, 813
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	264, 849
BsaWI	WCCGGW	1 cut(s)	568
Bsc4I	CCNNNNNNNGG	2 cut(s)	496, 697
Bse1I	ACTGG	3 cut(s)	292, 740, 771
Bse3DI	GCAATG	2 cut(s)	320, 678
Bse8I	GATNNNNATC	3 cut(s)	127, 174, 813
BseAI	TCCGGA	1 cut(s)	568
BseBI	CCWGG	2 cut(s)	180, 443
BseDI	CCNNGG	2 cut(s)	264, 849
BseGI	GGATG	5 cut(s)	35, 68, 435, 1010, 1029
BseJI	GATNNNNATC	3 cut(s)	127, 174, 813
BseLI	CCNNNNNNNGG	2 cut(s)	496, 697
BseMI	GCAATG	2 cut(s)	320, 678
BseMII	CTCAG	6 cut(s)	72, 450, 687, 792, 885, 978
BseNI	ACTGG	3 cut(s)	292, 740, 771
BseRI	GAGGAG	3 cut(s)	37, 312, 1007
BsiHKAI	GWGCWC	1 cut(s)	965
BsiHKCI	CYCGRG	1 cut(s)	263
BsiSI	CCGG	1 cut(s)	569
BslI	CCNNNNNNNGG	2 cut(s)	496, 697
BsmAI	GTCTC	1 cut(s)	12
BsmBI	CGTCTC	1 cut(s)	12
BsoBI	CYCGRG	1 cut(s)	263
Bsp1286I	GDGCHC	1 cut(s)	965
Bsp13I	TCCGGA	1 cut(s)	568
Bsp143I	GATC	5 cut(s)	32, 61, 122, 511, 986
Bsp1720I	GCTNAGC	1 cut(s)	459
BspACI	CCGC	3 cut(s)	75, 557, 918
BspCNI	CTCAG	6 cut(s)	71, 451, 688, 791, 884, 977
BspEI	TCCGGA	1 cut(s)	568
BspMI	ACCTGC	1 cut(s)	637
BspPI	GGATC	2 cut(s)	117, 519
BsrDI	GCAATG	2 cut(s)	320, 678
BsrI	ACTGG	3 cut(s)	292, 740, 771
BssECI	CCNNGG	2 cut(s)	264, 849
BssMI	GATC	5 cut(s)	32, 61, 122, 511, 986
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	849
Bst2UI	CCWGG	2 cut(s)	180, 443
Bst6I	CTCTTC	5 cut(s)	299, 474, 528, 545, 873
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	741
BstDEI	CTNAG	6 cut(s)	58, 459, 696, 778, 871, 964
BstENI	CCTNNNNNAGG	1 cut(s)	695
BstF5I	GGATG	5 cut(s)	35, 68, 435, 1010, 1029
BstKTI	GATC	5 cut(s)	35, 64, 125, 514, 989
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	5 cut(s)	32, 61, 122, 511, 986
BstMWI	GCNNNNNNNGC	3 cut(s)	163, 331, 783
BstNI	CCWGG	2 cut(s)	180, 443
BstSCI	CCNGG	2 cut(s)	178, 441
BstX2I	RGATCY	3 cut(s)	61, 122, 511
BstYI	RGATCY	3 cut(s)	61, 122, 511
BtsCI	GGATG	5 cut(s)	35, 68, 435, 1010, 1029
BtsIMutI	CAGTG	2 cut(s)	545, 764
BveI	ACCTGC	1 cut(s)	637
Cac8I	GCNNGC	1 cut(s)	741
CaiI	CAGNNNCTG	1 cut(s)	607
Cfr13I	GGNCC	1 cut(s)	439
Csp6I	GTAC	2 cut(s)	309, 715
CviAII	CATG	1 cut(s)	819
CviQI	GTAC	2 cut(s)	309, 715
DdeI	CTNAG	6 cut(s)	58, 459, 696, 778, 871, 964
DpnI	GATC	5 cut(s)	34, 63, 124, 513, 988
DpnII	GATC	5 cut(s)	32, 61, 122, 511, 986
Eam1104I	CTCTTC	5 cut(s)	299, 474, 528, 545, 873
EarI	CTCTTC	5 cut(s)	299, 474, 528, 545, 873
Ecl136II	GAGCTC	1 cut(s)	963
Eco130I	CCWWGG	1 cut(s)	849
Eco24I	GRGCYC	1 cut(s)	965
Eco47I	GGWCC	1 cut(s)	439
Eco53kI	GAGCTC	1 cut(s)	963
Eco57I	CTGAAG	3 cut(s)	293, 542, 569
Eco88I	CYCGRG	1 cut(s)	263
EcoICRI	GAGCTC	1 cut(s)	963
EcoNI	CCTNNNNNAGG	1 cut(s)	695
EcoRI	GAATTC	2 cut(s)	80, 770
EcoRII	CCWGG	2 cut(s)	178, 441
EcoT14I	CCWWGG	1 cut(s)	849
EcoT22I	ATGCAT	1 cut(s)	680
EcoT38I	GRGCYC	1 cut(s)	965
ErhI	CCWWGG	1 cut(s)	849
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	1 cut(s)	822
FatI	CATG	1 cut(s)	818
FokI	GGATG	4 cut(s)	22, 55, 442, 1017
FriOI	GRGCYC	1 cut(s)	965
FspBI	CTAG	2 cut(s)	30, 384
HapII	CCGG	1 cut(s)	569
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	822
HincII	GTYRAC	1 cut(s)	868
HindII	GTYRAC	1 cut(s)	868
HinfI	GANTC	8 cut(s)	26, 52, 259, 572, 610, 761, 814, 869
HpaII	CCGG	1 cut(s)	569
HphI	GGTGA	2 cut(s)	364, 712
Hpy166II	GTNNAC	1 cut(s)	868
Hpy188I	TCNGA	6 cut(s)	61, 122, 522, 724, 967, 991
Hpy188III	TCNNGA	7 cut(s)	30, 263, 340, 569, 686, 803, 939
Hpy8I	GTNNAC	1 cut(s)	868
HpyAV	CCTTC	4 cut(s)	337, 343, 349, 502
HpyCH4V	TGCA	3 cut(s)	325, 601, 678
HpyF10VI	GCNNNNNNNGC	3 cut(s)	163, 331, 783
HpyF3I	CTNAG	6 cut(s)	58, 459, 696, 778, 871, 964
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	822
Kpn2I	TCCGGA	1 cut(s)	568
Kzo9I	GATC	5 cut(s)	32, 61, 122, 511, 986
LmnI	GCTCC	4 cut(s)	418, 604, 675, 960
MaeI	CTAG	2 cut(s)	30, 384
MaeIII	GTNAC	4 cut(s)	40, 377, 543, 731
MalI	GATC	5 cut(s)	34, 63, 124, 513, 988
MboI	GATC	5 cut(s)	32, 61, 122, 511, 986
MflI	RGATCY	3 cut(s)	61, 122, 511
MhlI	GDGCHC	1 cut(s)	965
MluCI	AATT	6 cut(s)	16, 80, 99, 229, 279, 770
MlyI	GAGTC	1 cut(s)	863
Mph1103I	ATGCAT	1 cut(s)	680
MroI	TCCGGA	1 cut(s)	568
MroXI	GAANNNNTTC	1 cut(s)	335
MseI	TTAA	4 cut(s)	140, 372, 660, 1030
MslI	CAYNNNNRTG	1 cut(s)	194
MspI	CCGG	1 cut(s)	569
MspR9I	CCNGG	2 cut(s)	180, 443
MvaI	CCWGG	2 cut(s)	180, 443
MwoI	GCNNNNNNNGC	3 cut(s)	163, 331, 783
NdeII	GATC	5 cut(s)	32, 61, 122, 511, 986
NlaIII	CATG	1 cut(s)	822
NmuCI	GTSAC	1 cut(s)	543
NsiI	ATGCAT	1 cut(s)	680
PdmI	GAANNNNTTC	1 cut(s)	335
PfeI	GAWTC	7 cut(s)	26, 52, 259, 572, 610, 761, 814
PflFI	GACNNNGTC	1 cut(s)	391
PfoI	TCCNGGA	1 cut(s)	178
PleI	GAGTC	1 cut(s)	863
PpsI	GAGTC	1 cut(s)	863
Psp124BI	GAGCTC	1 cut(s)	965
Psp6I	CCWGG	2 cut(s)	178, 441
PspGI	CCWGG	2 cut(s)	178, 441
PspPI	GGNCC	1 cut(s)	439
PstNI	CAGNNNCTG	1 cut(s)	607
PsuI	RGATCY	3 cut(s)	61, 122, 511
PsyI	GACNNNGTC	1 cut(s)	391
RsaI	GTAC	2 cut(s)	310, 716
RsaNI	GTAC	2 cut(s)	309, 715
RseI	CAYNNNNRTG	1 cut(s)	194
SacI	GAGCTC	1 cut(s)	965
SaqAI	TTAA	4 cut(s)	140, 372, 660, 1030
Sau3AI	GATC	5 cut(s)	32, 61, 122, 511, 986
Sau96I	GGNCC	1 cut(s)	439
ScaI	AGTACT	1 cut(s)	716
SchI	GAGTC	1 cut(s)	863
ScrFI	CCNGG	2 cut(s)	180, 443
SduI	GDGCHC	1 cut(s)	965
SinI	GGWCC	1 cut(s)	439
SmiMI	CAYNNNNRTG	1 cut(s)	194
SmlI	CTYRAG	1 cut(s)	684
SmoI	CTYRAG	1 cut(s)	684
Sse9I	AATT	6 cut(s)	16, 80, 99, 229, 279, 770
SsiI	CCGC	3 cut(s)	75, 557, 918
SspMI	CTAG	2 cut(s)	30, 384
SstI	GAGCTC	1 cut(s)	965
StyD4I	CCNGG	2 cut(s)	178, 441
StyI	CCWWGG	1 cut(s)	849
TaqI	TCGA	6 cut(s)	50, 89, 107, 249, 575, 932
TasI	AATT	6 cut(s)	16, 80, 99, 229, 279, 770
TatI	WGTACW	2 cut(s)	308, 714
TfiI	GAWTC	7 cut(s)	26, 52, 259, 572, 610, 761, 814
Tru1I	TTAA	4 cut(s)	140, 372, 660, 1030
Tru9I	TTAA	4 cut(s)	140, 372, 660, 1030
TscAI	CASTG	2 cut(s)	552, 771
TseFI	GTSAC	1 cut(s)	543
Tsp45I	GTSAC	1 cut(s)	543
TspDTI	ATGAA	5 cut(s)	93, 215, 233, 446, 593
TspGWI	ACGGA	1 cut(s)	28
TspRI	CASTG	2 cut(s)	552, 771
Tth111I	GACNNNGTC	1 cut(s)	391
VpaK11BI	GGWCC	1 cut(s)	439
XagI	CCTNNNNNAGG	1 cut(s)	695
XapI	RAATTY	2 cut(s)	80, 770
XbaI	TCTAGA	1 cut(s)	29
XmnI	GAANNNNTTC	1 cut(s)	335
XspI	CTAG	2 cut(s)	30, 384
ZrmI	AGTACT	1 cut(s)	716
Zsp2I	ATGCAT	1 cut(s)	680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.