RLG00000030893

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0009277
Physical Location & Seq
Forward (+)
468975 .. 470858
1884 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030893

Sequence Viewer

Length: 1161 bp
ATGAAGCCCTCGTCGCGCTACAGCTCCTACGATGCACGCTCCTCCACCGCGTCCCACCACTCGTACCCGTCCTCCTCCGCCGAATTCAGGCCCAAGCACCCCGCCACGTCCTCCTCACGCGCCGTCGTCAAATCCAAGCCCTCCCCGGATCCCAACCTCACCACCATGGTGAAAAAGTTCATGGAAAAGCGCTCCTCCTCCTCCTCCTCCTCCTCCTCGTCCAAGACCAAGCCGATTAGCGGCACCGCCTTGGTGATTCCGTCCGATGTGATCGCCGACGACCTGAAAAAGACGGCAAAAAATGGCTCCAACTTCGCGGCGCTGCACAGGAAGCTCTTCGGGAAAGCCACGGGATCGGCGGACAAGAAGAAGGAGGTCAAGGCGTTGACCGAGGTCAAAGGGAACACCAGGACGTTGGCCATGGTGTTGAGAAGTGAGAGAGAGCTTCTCAGTCTGAATAAGGACCAAGAATCGGAGATCGCCGAGCTCAAGTTGATGCTCGAAGAGAAGAACAAAGAAGTGGATAAATTGAAGGACTTGTGTCTGAAGCAAAGGGAGGAAATCAAATCGTTGAAGAGCACGATTTTGTTCCCGGATGTTATGAATTCTCAGCTTCAAGAGTTGCTAGAGAAACAAGGGTCAGAGCTGAAGCAAGCCAAACAAGTAATCCCAAATCTTCAAAGGCAGGTCACTTCTCTCACTGGCCAGCTCCAATGCCTTGCAGTGGATCTTGCTGAGGTGAAAGCAGACAAACAGTCGGTTAGGGCATGTTTTCAAAGTGATGACAGTATTCCCAGAACTCCAACGTATCATCATAAAGAATCTTTGAATTCTCTGGAGTTCAGCTCTTGTGATCCAACCAGCCCTGGTAGTCCAGATGACATGTTCCTAAAGGATTTAAATCCATGCTTAACACCTTTCTGTGCTAAATCGAAGTCCAAGGAATTTGATGAGATGGGTTACTACTCTCCACATGGCTATGATGAAAGCTTATCTAAAAACAACGTGGAGTTTGGATTTAACTCTTGTGTGAGGAAGTTGACCCGAAGTTCTGACCGCTGCCAAAATTCCGAAACAGAAAGTAGAACAGCTCATGCAAATCGGAGATCTGGTGATGCCCAACGAACATATGGCAATCGAACTCACCGTAATTATTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

387

Amino Acids

43.04

Weight (kDa)

9.27

Isoelectric Point (pI)

53.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 676
AccB1I GGYRCC 1 cut(s) 242
AccII CGCG 4 cut(s) 16, 50, 120, 317
AciI CCGC 8 cut(s) 48, 78, 102, 240, 246, 317, 359, 1057
AclWI GGATC 5 cut(s) 143, 156, 361, 735, 848
AcoI YGGCCR 2 cut(s) 417, 703
AcsI RAATTY 5 cut(s) 83, 604, 829, 944, 1066
AcuI CTGAAG 2 cut(s) 566, 668
AfaI GTAC 1 cut(s) 65
AfeI AGCGCT 1 cut(s) 191
AfiI CCNNNNNNNGG 4 cut(s) 87, 239, 472, 724
AflIII ACRYGT 1 cut(s) 882
AgsI TTSAA 6 cut(s) 532, 574, 617, 680, 776, 829
AhdI GACNNNNNGTC 1 cut(s) 754
AjiI CACGTC 1 cut(s) 108
AjnI CCWGG 2 cut(s) 407, 865
AleI CACNNNNGTG 1 cut(s) 167
Alw21I GWGCWC 2 cut(s) 489, 581
AlwI GGATC 5 cut(s) 143, 156, 361, 735, 848
Aor51HI AGCGCT 1 cut(s) 191
AoxI GGCC 3 cut(s) 89, 417, 703
ApeKI GCWGC 2 cut(s) 322, 1059
ApoI RAATTY 5 cut(s) 83, 604, 829, 944, 1066
Asp700I GAANNNNTTC 2 cut(s) 176, 335
AspLEI GCGC 4 cut(s) 18, 122, 192, 322
AspS9I GGNCC 2 cut(s) 90, 463
AsuC2I CCSGG 2 cut(s) 146, 593
AsuHPI GGTGA 6 cut(s) 151, 181, 265, 751, 1124, 1136
AvaII GGWCC 1 cut(s) 463
BalI TGGCCA 2 cut(s) 419, 705
BamHI GGATCC 1 cut(s) 148
BanI GGYRCC 1 cut(s) 242
BanII GRGCYC 1 cut(s) 489
Bbv12I GWGCWC 2 cut(s) 489, 581
BbvCI CCTCAGC 1 cut(s) 735
BbvI GCAGC 2 cut(s) 309, 1046
BccI CCATC 1 cut(s) 949
BceAI ACGGC 2 cut(s) 107, 309
BciT130I CCWGG 2 cut(s) 409, 867
BcnI CCSGG 2 cut(s) 146, 593
BfaI CTAG 1 cut(s) 626
BfmI CTRYAG 1 cut(s) 19
BfoI RGCGCY 2 cut(s) 193, 323
BfuAI ACCTGC 1 cut(s) 676
BglII AGATCT 1 cut(s) 1106
BisI GCNGC 4 cut(s) 241, 318, 323, 1060
BlsI GCNGC 4 cut(s) 242, 319, 324, 1061
Bme1390I CCNGG 4 cut(s) 146, 409, 593, 867
Bme18I GGWCC 1 cut(s) 463
BmeRI GACNNNNNGTC 1 cut(s) 754
BmgBI CACGTC 1 cut(s) 108
BmgT120I GGNCC 2 cut(s) 90, 463
BmiI GGNNCC 3 cut(s) 150, 244, 307
BmrFI CCNGG 4 cut(s) 146, 409, 593, 867
BmsI GCATC 3 cut(s) 22, 486, 1105
BoxI GACNNNNGTC 2 cut(s) 392, 540
BplI GAGNNNNNCTC 4 cut(s) 432, 464, 830, 862
BpmI CTGGAG 1 cut(s) 857
Bpu10I CCTNAGC 1 cut(s) 735
BpuEI CTTGAG 1 cut(s) 473
BpuMI CCSGG 2 cut(s) 146, 593
BsaBI GATNNNNATC 1 cut(s) 900
BsaJI CCNNGG 8 cut(s) 144, 165, 249, 348, 390, 420, 865, 939
BsaXI ACNNNNNCTCC 4 cut(s) 56, 86, 1096, 1126
Bsc4I CCNNNNNNNGG 4 cut(s) 87, 239, 472, 724
Bse1I ACTGG 1 cut(s) 706
Bse8I GATNNNNATC 1 cut(s) 900
BseBI CCWGG 2 cut(s) 409, 867
BseDI CCNNGG 8 cut(s) 144, 165, 249, 348, 390, 420, 865, 939
BseGI GGATG 1 cut(s) 601
BseJI GATNNNNATC 1 cut(s) 900
BseLI CCNNNNNNNGG 4 cut(s) 87, 239, 472, 724
BseMII CTCAG 3 cut(s) 463, 623, 726
BseNI ACTGG 1 cut(s) 706
BseXI GCAGC 2 cut(s) 309, 1046
BsgI GTGCAG 1 cut(s) 308
Bsh1236I CGCG 4 cut(s) 16, 50, 120, 317
BshFI GGCC 3 cut(s) 91, 419, 705
BshNI GGYRCC 1 cut(s) 242
BsiHKAI GWGCWC 2 cut(s) 489, 581
BsiSI CCGG 2 cut(s) 146, 593
BslFI GGGAC 1 cut(s) 37
BslI CCNNNNNNNGG 4 cut(s) 87, 239, 472, 724
BsmFI GGGAC 1 cut(s) 37
BsnI GGCC 3 cut(s) 91, 419, 705
Bsp1286I GDGCHC 2 cut(s) 489, 581
Bsp143I GATC 7 cut(s) 148, 270, 353, 477, 727, 853, 1106
Bsp19I CCATGG 2 cut(s) 165, 420
BspACI CCGC 8 cut(s) 48, 78, 102, 240, 246, 317, 359, 1057
BspANI GGCC 3 cut(s) 91, 419, 705
BspCNI CTCAG 3 cut(s) 462, 622, 727
BspFNI CGCG 4 cut(s) 16, 50, 120, 317
BspLI GGNNCC 3 cut(s) 150, 244, 307
BspMI ACCTGC 1 cut(s) 676
BspPI GGATC 5 cut(s) 143, 156, 361, 735, 848
BspQI GCTCTTC 2 cut(s) 341, 569
BspT107I GGYRCC 1 cut(s) 242
BsrI ACTGG 1 cut(s) 706
BssECI CCNNGG 8 cut(s) 144, 165, 249, 348, 390, 420, 865, 939
BssMI GATC 7 cut(s) 148, 270, 353, 477, 727, 853, 1106
BssT1I CCWWGG 4 cut(s) 165, 249, 420, 939
Bst2UI CCWGG 2 cut(s) 409, 867
Bst4CI ACNGT 3 cut(s) 756, 788, 1148
Bst6I CTCTTC 3 cut(s) 341, 498, 569
BstC8I GCNNGC 3 cut(s) 37, 654, 707
BstDEI CTNAG 3 cut(s) 449, 609, 735
BstDSI CCRYGG 3 cut(s) 165, 348, 420
BstF5I GGATG 1 cut(s) 601
BstFNI CGCG 4 cut(s) 16, 50, 120, 317
BstH2I RGCGCY 2 cut(s) 193, 323
BstHHI GCGC 4 cut(s) 18, 122, 192, 322
BstKTI GATC 7 cut(s) 151, 273, 356, 480, 730, 856, 1109
BstMBI GATC 7 cut(s) 148, 270, 353, 477, 727, 853, 1106
BstMWI GCNNNNNNNGC 2 cut(s) 13, 331
BstNI CCWGG 2 cut(s) 409, 867
BstNSI RCATGY 2 cut(s) 771, 886
BstPAI GACNNNNGTC 2 cut(s) 392, 540
BstSCI CCNGG 4 cut(s) 144, 407, 591, 865
BstSFI CTRYAG 1 cut(s) 19
BstUI CGCG 4 cut(s) 16, 50, 120, 317
BstV1I GCAGC 2 cut(s) 309, 1046
BstX2I RGATCY 3 cut(s) 148, 727, 1106
BstXI CCANNNNNNTGG 1 cut(s) 415
BstYI RGATCY 3 cut(s) 148, 727, 1106
BsuRI GGCC 3 cut(s) 91, 419, 705
BtgI CCRYGG 3 cut(s) 165, 348, 420
BtrI CACGTC 1 cut(s) 108
BtsCI GGATG 1 cut(s) 601
BtsI GCAGTG 1 cut(s) 729
BtsIMutI CAGTG 2 cut(s) 699, 729
BveI ACCTGC 1 cut(s) 676
Cac8I GCNNGC 3 cut(s) 37, 654, 707
CfoI GCGC 4 cut(s) 18, 122, 192, 322
Cfr13I GGNCC 2 cut(s) 90, 463
CseI GACGC 1 cut(s) 39
Csp6I GTAC 1 cut(s) 64
CviAII CATG 8 cut(s) 166, 181, 421, 768, 883, 906, 974, 1094
CviQI GTAC 1 cut(s) 64
DdeI CTNAG 3 cut(s) 449, 609, 735
DpnI GATC 7 cut(s) 150, 272, 355, 479, 729, 855, 1108
DpnII GATC 7 cut(s) 148, 270, 353, 477, 727, 853, 1106
DraI TTTAAA 1 cut(s) 900
DriI GACNNNNNGTC 1 cut(s) 754
EaeI YGGCCR 2 cut(s) 417, 703
Eam1104I CTCTTC 3 cut(s) 341, 498, 569
Eam1105I GACNNNNNGTC 1 cut(s) 754
EarI CTCTTC 3 cut(s) 341, 498, 569
EciI GGCGGA 2 cut(s) 67, 374
Ecl136II GAGCTC 1 cut(s) 487
Eco130I CCWWGG 4 cut(s) 165, 249, 420, 939
Eco24I GRGCYC 1 cut(s) 489
Eco47I GGWCC 1 cut(s) 463
Eco47III AGCGCT 1 cut(s) 191
Eco53kI GAGCTC 1 cut(s) 487
Eco57I CTGAAG 2 cut(s) 566, 668
EcoICRI GAGCTC 1 cut(s) 487
EcoRI GAATTC 3 cut(s) 83, 604, 829
EcoRII CCWGG 2 cut(s) 407, 865
EcoT14I CCWWGG 4 cut(s) 165, 249, 420, 939
EcoT38I GRGCYC 1 cut(s) 489
ErhI CCWWGG 4 cut(s) 165, 249, 420, 939
FaeI CATG 8 cut(s) 169, 184, 424, 771, 886, 909, 977, 1097
FaqI GGGAC 1 cut(s) 37
FatI CATG 8 cut(s) 165, 180, 420, 767, 882, 905, 973, 1093
FauI CCCGC 1 cut(s) 109
FauNDI CATATG 1 cut(s) 1129
Fnu4HI GCNGC 4 cut(s) 241, 318, 323, 1060
FokI GGATG 1 cut(s) 608
FriOI GRGCYC 1 cut(s) 489
Fsp4HI GCNGC 4 cut(s) 241, 318, 323, 1060
FspBI CTAG 1 cut(s) 626
GlaI GCGC 4 cut(s) 17, 121, 191, 321
GluI GCNGC 4 cut(s) 241, 318, 323, 1060
GsuI CTGGAG 1 cut(s) 857
HaeII RGCGCY 2 cut(s) 193, 323
HaeIII GGCC 3 cut(s) 91, 419, 705
HapII CCGG 2 cut(s) 146, 593
HgaI GACGC 1 cut(s) 39
HhaI GCGC 4 cut(s) 18, 122, 192, 322
Hin1II CATG 8 cut(s) 169, 184, 424, 771, 886, 909, 977, 1097
Hin6I GCGC 4 cut(s) 16, 120, 190, 320
HinP1I GCGC 4 cut(s) 16, 120, 190, 320
HincII GTYRAC 2 cut(s) 387, 1041
HindII GTYRAC 2 cut(s) 387, 1041
HindIII AAGCTT 1 cut(s) 988
HinfI GANTC 3 cut(s) 256, 470, 821
HpaII CCGG 2 cut(s) 146, 593
HphI GGTGA 6 cut(s) 151, 181, 265, 751, 1124, 1136
Hpy166II GTNNAC 2 cut(s) 387, 1041
Hpy188I TCNGA 8 cut(s) 265, 456, 475, 546, 643, 1054, 1072, 1104
Hpy188III TCNNGA 4 cut(s) 340, 617, 836, 875
Hpy8I GTNNAC 2 cut(s) 387, 1041
Hpy99I CGWCG 3 cut(s) 16, 128, 281
HpyAV CCTTC 2 cut(s) 364, 526
HpyCH4III ACNGT 3 cut(s) 756, 788, 1148
HpyCH4IV ACGT 4 cut(s) 107, 413, 806, 1005
HpyCH4V TGCA 4 cut(s) 35, 325, 722, 1097
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 331
HpyF3I CTNAG 3 cut(s) 449, 609, 735
HpySE526I ACGT 4 cut(s) 107, 413, 806, 1005
Hsp92II CATG 8 cut(s) 169, 184, 424, 771, 886, 909, 977, 1097
HspAI GCGC 4 cut(s) 16, 120, 190, 320
Kzo9I GATC 7 cut(s) 148, 270, 353, 477, 727, 853, 1106
LguI GCTCTTC 2 cut(s) 341, 569
LmnI GCTCC 5 cut(s) 29, 44, 197, 311, 714
Lsp1109I GCAGC 2 cut(s) 309, 1046
LweI GCATC 3 cut(s) 22, 486, 1105
MaeI CTAG 1 cut(s) 626
MaeII ACGT 4 cut(s) 107, 413, 806, 1005
MaeIII GTNAC 2 cut(s) 688, 959
MalI GATC 7 cut(s) 150, 272, 355, 479, 729, 855, 1108
MboI GATC 7 cut(s) 148, 270, 353, 477, 727, 853, 1106
MboII GAAGA 6 cut(s) 328, 379, 515, 520, 586, 668
MflI RGATCY 3 cut(s) 148, 727, 1106
MhlI GDGCHC 2 cut(s) 489, 581
MlsI TGGCCA 2 cut(s) 419, 705
MluCI AATT 7 cut(s) 83, 527, 604, 829, 944, 1066, 1150
MluNI TGGCCA 2 cut(s) 419, 705
MmeI TCCRAC 3 cut(s) 333, 827, 881
Mox20I TGGCCA 2 cut(s) 419, 705
MroXI GAANNNNTTC 2 cut(s) 176, 335
MscI TGGCCA 2 cut(s) 419, 705
MseI TTAA 3 cut(s) 899, 911, 1020
MslI CAYNNNNRTG 3 cut(s) 164, 167, 978
Msp20I TGGCCA 2 cut(s) 419, 705
MspA1I CMGCKG 1 cut(s) 1059
MspI CCGG 2 cut(s) 146, 593
MspR9I CCNGG 4 cut(s) 146, 409, 593, 867
MvaI CCWGG 2 cut(s) 409, 867
MvnI CGCG 4 cut(s) 16, 50, 120, 317
MwoI GCNNNNNNNGC 2 cut(s) 13, 331
NciI CCSGG 2 cut(s) 146, 593
NcoI CCATGG 2 cut(s) 165, 420
NdeI CATATG 1 cut(s) 1129
NdeII GATC 7 cut(s) 148, 270, 353, 477, 727, 853, 1106
NlaIII CATG 8 cut(s) 169, 184, 424, 771, 886, 909, 977, 1097
NlaIV GGNNCC 3 cut(s) 150, 244, 307
NmeAIII GCCGAG 1 cut(s) 508
NmuCI GTSAC 1 cut(s) 688
NspI RCATGY 2 cut(s) 771, 886
OliI CACNNNNGTG 1 cut(s) 167
PciI ACATGT 1 cut(s) 882
PciSI GCTCTTC 2 cut(s) 341, 569
PcsI WCGNNNNNNNCGW 1 cut(s) 1144
PdmI GAANNNNTTC 2 cut(s) 176, 335
PfeI GAWTC 3 cut(s) 256, 470, 821
PfoI TCCNGGA 1 cut(s) 591
PkrI GCNGC 4 cut(s) 242, 319, 324, 1061
PscI ACATGT 1 cut(s) 882
PshAI GACNNNNGTC 2 cut(s) 392, 540
Psp124BI GAGCTC 1 cut(s) 489
Psp6I CCWGG 2 cut(s) 407, 865
PspGI CCWGG 2 cut(s) 407, 865
PspN4I GGNNCC 3 cut(s) 150, 244, 307
PspPI GGNCC 2 cut(s) 90, 463
PsuI RGATCY 3 cut(s) 148, 727, 1106
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
RseI CAYNNNNRTG 3 cut(s) 164, 167, 978
SacI GAGCTC 1 cut(s) 489
SapI GCTCTTC 2 cut(s) 341, 569
SaqAI TTAA 3 cut(s) 899, 911, 1020
SatI GCNGC 4 cut(s) 241, 318, 323, 1060
Sau3AI GATC 7 cut(s) 148, 270, 353, 477, 727, 853, 1106
Sau96I GGNCC 2 cut(s) 90, 463
ScrFI CCNGG 4 cut(s) 146, 409, 593, 867
SduI GDGCHC 2 cut(s) 489, 581
SfaNI GCATC 3 cut(s) 22, 486, 1105
SfcI CTRYAG 1 cut(s) 19
SinI GGWCC 1 cut(s) 463
SmiI ATTTAAAT 1 cut(s) 900
SmiMI CAYNNNNRTG 3 cut(s) 164, 167, 978
SmlI CTYRAG 1 cut(s) 488
SmoI CTYRAG 1 cut(s) 488
Sse9I AATT 7 cut(s) 83, 527, 604, 829, 944, 1066, 1150
SsiI CCGC 8 cut(s) 48, 78, 102, 240, 246, 317, 359, 1057
SspMI CTAG 1 cut(s) 626
SstI GAGCTC 1 cut(s) 489
StyD4I CCNGG 4 cut(s) 144, 407, 591, 865
StyI CCWWGG 4 cut(s) 165, 249, 420, 939
SwaI ATTTAAAT 1 cut(s) 900
TaaI ACNGT 3 cut(s) 756, 788, 1148
TaiI ACGT 4 cut(s) 110, 416, 809, 1008
TaqI TCGA 3 cut(s) 501, 932, 1138
TaqII GACCGA 1 cut(s) 404
TasI AATT 7 cut(s) 83, 527, 604, 829, 944, 1066, 1150
TauI GCSGC 2 cut(s) 243, 320
TfiI GAWTC 3 cut(s) 256, 470, 821
Tru1I TTAA 3 cut(s) 899, 911, 1020
Tru9I TTAA 3 cut(s) 899, 911, 1020
TscAI CASTG 2 cut(s) 706, 729
TseFI GTSAC 1 cut(s) 688
TseI GCWGC 2 cut(s) 322, 1059
Tsp45I GTSAC 1 cut(s) 688
TspDTI ATGAA 4 cut(s) 17, 169, 617, 999
TspGWI ACGGA 1 cut(s) 249
TspRI CASTG 2 cut(s) 706, 729
VpaK11BI GGWCC 1 cut(s) 463
XapI RAATTY 5 cut(s) 83, 604, 829, 944, 1066
XceI RCATGY 2 cut(s) 771, 886
XcmI CCANNNNNNNNNTGG 1 cut(s) 1127
XmnI GAANNNNTTC 2 cut(s) 176, 335
XspI CTAG 1 cut(s) 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.