Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000255.1

Orthogroup ID

OG0009277

Physical Location & Seq

Genomic Coordinates Forward (+)

20994 .. 21515

Gene Structure 522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000255.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

atgaagccctcgtcgcgctacagctcctacgatgcacgctcctccaccgcgtcccaccactcctacccgtcctcctctgccgaattcaagcccaagcaccccgccacgtcctcctcacgcgccgtcgtcaaatccaagccctccccggatcccaacctcaccgccatggtgaaaaagttcatggaaaagcgctcctcctcctcctcctcctccaagcccaagccgattaacggcaccgccttggtgattccgtccgatgtgatcgccgacgacctgaaaaagacggcaaaaaatggctccaacttcgcggcgctgcacaggaagctcttcgggaaagccacgggatcggcggacaagaagaaggaggtcaaggcgttgaccgaggtcaaagggaacaccaggacgttggccatggtgttgagaagcgagagagagcttctcagtctgaataaggaccaagaatcggacatcgccgagctcaggttgatgctcgaagagaagaacaaagaagtgagcatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

173

Amino Acids

18.88

Weight (kDa)

9.93

Isoelectric Point (pI)

44.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17240 AT4G17240
fragaria_vesca	FvH4_3g00551 FvH4_3g00551 FvH4_3g00551 FvH4_3g00551
malus_domestica	MD00G1058000.v1.1 MD10G1336700.v1.1
prunus_persica	Prupe.4G006700_v2.0.a1
pyrus_communis	pycom05g32610 pycom10g28620
rosa_chinensis	RchiOBHm_Chr5g0000761
rosa_laevigata	RLG00000030893
rosa_multiflora	Rmu_sc0000255.1_g000006 Rmu_sc0011992.1_g000004
rosa_roxburghii	Rroxscaffold_1G00075470
rosa_rugosa	Rorug04G0386200
rosa_samantha	Rh5AG006300 Rh5BG008100 Rh5CG006800 Rh5DG006800
rosa_wichuraiana	Rw5G000640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	233
AccII	CGCG	4 cut(s)	16, 50, 120, 308
AciI	CCGC	6 cut(s)	48, 102, 162, 237, 308, 350
AclWI	GGATC	3 cut(s)	143, 156, 352
AcoI	YGGCCR	1 cut(s)	408
AcsI	RAATTY	1 cut(s)	83
AfeI	AGCGCT	1 cut(s)	191
AfiI	CCNNNNNNNGG	3 cut(s)	230, 463, 480
AgsI	TTSAA	1 cut(s)	88
AjiI	CACGTC	1 cut(s)	108
AjnI	CCWGG	1 cut(s)	398
AluBI	AGCT	4 cut(s)	24, 325, 436, 478
AluI	AGCT	4 cut(s)	24, 325, 436, 478
Alw21I	GWGCWC	1 cut(s)	480
AlwI	GGATC	3 cut(s)	143, 156, 352
Aor51HI	AGCGCT	1 cut(s)	191
AoxI	GGCC	1 cut(s)	408
ApeKI	GCWGC	1 cut(s)	313
ApoI	RAATTY	1 cut(s)	83
Asp700I	GAANNNNTTC	2 cut(s)	176, 326
AspLEI	GCGC	4 cut(s)	18, 122, 192, 313
AspS9I	GGNCC	1 cut(s)	454
AsuC2I	CCSGG	1 cut(s)	146
AsuHPI	GGTGA	3 cut(s)	151, 181, 256
AvaII	GGWCC	1 cut(s)	454
BalI	TGGCCA	1 cut(s)	410
BamHI	GGATCC	1 cut(s)	148
BanI	GGYRCC	1 cut(s)	233
BanII	GRGCYC	1 cut(s)	480
Bbv12I	GWGCWC	1 cut(s)	480
BbvI	GCAGC	1 cut(s)	300
BceAI	ACGGC	3 cut(s)	107, 247, 300
BciT130I	CCWGG	1 cut(s)	400
BcnI	CCSGG	1 cut(s)	146
BfmI	CTRYAG	1 cut(s)	19
BfoI	RGCGCY	2 cut(s)	193, 314
BisI	GCNGC	2 cut(s)	309, 314
BlsI	GCNGC	2 cut(s)	310, 315
Bme1390I	CCNGG	2 cut(s)	146, 400
Bme18I	GGWCC	1 cut(s)	454
BmgBI	CACGTC	1 cut(s)	108
BmgT120I	GGNCC	1 cut(s)	454
BmiI	GGNNCC	3 cut(s)	150, 235, 298
BmrFI	CCNGG	2 cut(s)	146, 400
BmsI	GCATC	2 cut(s)	22, 477
BoxI	GACNNNNGTC	1 cut(s)	383
BplI	GAGNNNNNCTC	2 cut(s)	423, 455
Bpu10I	CCTNAGC	1 cut(s)	479
BpuMI	CCSGG	1 cut(s)	146
BsaJI	CCNNGG	6 cut(s)	144, 165, 240, 339, 381, 411
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bsc4I	CCNNNNNNNGG	3 cut(s)	230, 463, 480
BseBI	CCWGG	1 cut(s)	400
BseDI	CCNNGG	6 cut(s)	144, 165, 240, 339, 381, 411
BseLI	CCNNNNNNNGG	3 cut(s)	230, 463, 480
BseMII	CTCAG	2 cut(s)	454, 493
BseRI	GAGGAG	9 cut(s)	31, 64, 103, 184, 187, 190, 193, 196, 199
BseXI	GCAGC	1 cut(s)	300
BsgI	GTGCAG	1 cut(s)	299
Bsh1236I	CGCG	4 cut(s)	16, 50, 120, 308
BshFI	GGCC	1 cut(s)	410
BshNI	GGYRCC	1 cut(s)	233
BsiHKAI	GWGCWC	1 cut(s)	480
BsiSI	CCGG	1 cut(s)	146
BslFI	GGGAC	1 cut(s)	37
BslI	CCNNNNNNNGG	3 cut(s)	230, 463, 480
BsmFI	GGGAC	1 cut(s)	37
BsnI	GGCC	1 cut(s)	410
Bsp1286I	GDGCHC	1 cut(s)	480
Bsp143I	GATC	3 cut(s)	148, 261, 344
Bsp19I	CCATGG	2 cut(s)	165, 411
BspACI	CCGC	6 cut(s)	48, 102, 162, 237, 308, 350
BspANI	GGCC	1 cut(s)	410
BspCNI	CTCAG	2 cut(s)	453, 492
BspFNI	CGCG	4 cut(s)	16, 50, 120, 308
BspLI	GGNNCC	3 cut(s)	150, 235, 298
BspPI	GGATC	3 cut(s)	143, 156, 352
BspQI	GCTCTTC	1 cut(s)	332
BspT107I	GGYRCC	1 cut(s)	233
BssECI	CCNNGG	6 cut(s)	144, 165, 240, 339, 381, 411
BssMI	GATC	3 cut(s)	148, 261, 344
BssT1I	CCWWGG	3 cut(s)	165, 240, 411
Bst2UI	CCWGG	1 cut(s)	400
Bst6I	CTCTTC	2 cut(s)	332, 489
BstC8I	GCNNGC	1 cut(s)	37
BstDEI	CTNAG	2 cut(s)	440, 479
BstDSI	CCRYGG	3 cut(s)	165, 339, 411
BstFNI	CGCG	4 cut(s)	16, 50, 120, 308
BstH2I	RGCGCY	2 cut(s)	193, 314
BstHHI	GCGC	4 cut(s)	18, 122, 192, 313
BstKTI	GATC	3 cut(s)	151, 264, 347
BstMBI	GATC	3 cut(s)	148, 261, 344
BstMWI	GCNNNNNNNGC	2 cut(s)	13, 322
BstNI	CCWGG	1 cut(s)	400
BstPAI	GACNNNNGTC	1 cut(s)	383
BstSCI	CCNGG	2 cut(s)	144, 398
BstSFI	CTRYAG	1 cut(s)	19
BstUI	CGCG	4 cut(s)	16, 50, 120, 308
BstV1I	GCAGC	1 cut(s)	300
BstX2I	RGATCY	1 cut(s)	148
BstXI	CCANNNNNNTGG	1 cut(s)	406
BstYI	RGATCY	1 cut(s)	148
BsuRI	GGCC	1 cut(s)	410
BtgI	CCRYGG	3 cut(s)	165, 339, 411
BtgZI	GCGATG	1 cut(s)	454
BtrI	CACGTC	1 cut(s)	108
Cac8I	GCNNGC	1 cut(s)	37
CfoI	GCGC	4 cut(s)	18, 122, 192, 313
Cfr13I	GGNCC	1 cut(s)	454
CseI	GACGC	1 cut(s)	39
CviAII	CATG	3 cut(s)	166, 181, 412
DdeI	CTNAG	2 cut(s)	440, 479
DpnI	GATC	3 cut(s)	150, 263, 346
DpnII	GATC	3 cut(s)	148, 261, 344
EaeI	YGGCCR	1 cut(s)	408
Eam1104I	CTCTTC	2 cut(s)	332, 489
EarI	CTCTTC	2 cut(s)	332, 489
EciI	GGCGGA	1 cut(s)	365
Ecl136II	GAGCTC	1 cut(s)	478
Eco130I	CCWWGG	3 cut(s)	165, 240, 411
Eco24I	GRGCYC	1 cut(s)	480
Eco47I	GGWCC	1 cut(s)	454
Eco47III	AGCGCT	1 cut(s)	191
Eco53kI	GAGCTC	1 cut(s)	478
EcoICRI	GAGCTC	1 cut(s)	478
EcoRI	GAATTC	1 cut(s)	83
EcoRII	CCWGG	1 cut(s)	398
EcoT14I	CCWWGG	3 cut(s)	165, 240, 411
EcoT38I	GRGCYC	1 cut(s)	480
ErhI	CCWWGG	3 cut(s)	165, 240, 411
FaeI	CATG	3 cut(s)	169, 184, 415
FaiI	YATR	3 cut(s)	167, 182, 413
FaqI	GGGAC	1 cut(s)	37
FatI	CATG	3 cut(s)	165, 180, 411
FauI	CCCGC	1 cut(s)	109
Fnu4HI	GCNGC	2 cut(s)	309, 314
FriOI	GRGCYC	1 cut(s)	480
Fsp4HI	GCNGC	2 cut(s)	309, 314
GlaI	GCGC	4 cut(s)	17, 121, 191, 312
GluI	GCNGC	2 cut(s)	309, 314
HaeII	RGCGCY	2 cut(s)	193, 314
HaeIII	GGCC	1 cut(s)	410
HapII	CCGG	1 cut(s)	146
HgaI	GACGC	1 cut(s)	39
HhaI	GCGC	4 cut(s)	18, 122, 192, 313
Hin1II	CATG	3 cut(s)	169, 184, 415
Hin6I	GCGC	4 cut(s)	16, 120, 190, 311
HinP1I	GCGC	4 cut(s)	16, 120, 190, 311
HincII	GTYRAC	1 cut(s)	378
HindII	GTYRAC	1 cut(s)	378
HinfI	GANTC	2 cut(s)	247, 461
HpaII	CCGG	1 cut(s)	146
HphI	GGTGA	3 cut(s)	151, 181, 256
Hpy166II	GTNNAC	1 cut(s)	378
Hpy188I	TCNGA	3 cut(s)	256, 447, 466
Hpy188III	TCNNGA	1 cut(s)	331
Hpy8I	GTNNAC	1 cut(s)	378
Hpy99I	CGWCG	3 cut(s)	16, 128, 272
HpyAV	CCTTC	1 cut(s)	355
HpyCH4IV	ACGT	2 cut(s)	107, 404
HpyCH4V	TGCA	2 cut(s)	35, 316
HpyF10VI	GCNNNNNNNGC	2 cut(s)	13, 322
HpyF3I	CTNAG	2 cut(s)	440, 479
HpySE526I	ACGT	2 cut(s)	107, 404
Hsp92II	CATG	3 cut(s)	169, 184, 415
HspAI	GCGC	4 cut(s)	16, 120, 190, 311
Kzo9I	GATC	3 cut(s)	148, 261, 344
LguI	GCTCTTC	1 cut(s)	332
LmnI	GCTCC	4 cut(s)	29, 44, 197, 302
LpnPI	CCDG	6 cut(s)	159, 287, 304, 385, 412, 466
Lsp1109I	GCAGC	1 cut(s)	300
LweI	GCATC	2 cut(s)	22, 477
MaeII	ACGT	2 cut(s)	107, 404
MalI	GATC	3 cut(s)	150, 263, 346
MboI	GATC	3 cut(s)	148, 261, 344
MboII	GAAGA	4 cut(s)	319, 370, 506, 511
MflI	RGATCY	1 cut(s)	148
MhlI	GDGCHC	1 cut(s)	480
MlsI	TGGCCA	1 cut(s)	410
MluCI	AATT	1 cut(s)	83
MluNI	TGGCCA	1 cut(s)	410
MmeI	TCCRAC	1 cut(s)	324
Mox20I	TGGCCA	1 cut(s)	410
MroXI	GAANNNNTTC	2 cut(s)	176, 326
MscI	TGGCCA	1 cut(s)	410
MseI	TTAA	1 cut(s)	228
MslI	CAYNNNNRTG	1 cut(s)	164
Msp20I	TGGCCA	1 cut(s)	410
MspI	CCGG	1 cut(s)	146
MspR9I	CCNGG	2 cut(s)	146, 400
MvaI	CCWGG	1 cut(s)	400
MvnI	CGCG	4 cut(s)	16, 50, 120, 308
MwoI	GCNNNNNNNGC	2 cut(s)	13, 322
NciI	CCSGG	1 cut(s)	146
NcoI	CCATGG	2 cut(s)	165, 411
NdeII	GATC	3 cut(s)	148, 261, 344
NlaIII	CATG	3 cut(s)	169, 184, 415
NlaIV	GGNNCC	3 cut(s)	150, 235, 298
NmeAIII	GCCGAG	1 cut(s)	499
PciSI	GCTCTTC	1 cut(s)	332
PdmI	GAANNNNTTC	2 cut(s)	176, 326
PfeI	GAWTC	2 cut(s)	247, 461
PkrI	GCNGC	2 cut(s)	310, 315
PshAI	GACNNNNGTC	1 cut(s)	383
Psp124BI	GAGCTC	1 cut(s)	480
Psp6I	CCWGG	1 cut(s)	398
PspGI	CCWGG	1 cut(s)	398
PspN4I	GGNNCC	3 cut(s)	150, 235, 298
PspPI	GGNCC	1 cut(s)	454
PsuI	RGATCY	1 cut(s)	148
RseI	CAYNNNNRTG	1 cut(s)	164
SacI	GAGCTC	1 cut(s)	480
SapI	GCTCTTC	1 cut(s)	332
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	2 cut(s)	309, 314
Sau3AI	GATC	3 cut(s)	148, 261, 344
Sau96I	GGNCC	1 cut(s)	454
ScrFI	CCNGG	2 cut(s)	146, 400
SduI	GDGCHC	1 cut(s)	480
SfaNI	GCATC	2 cut(s)	22, 477
SfcI	CTRYAG	1 cut(s)	19
SinI	GGWCC	1 cut(s)	454
SmiMI	CAYNNNNRTG	1 cut(s)	164
Sse9I	AATT	1 cut(s)	83
SsiI	CCGC	6 cut(s)	48, 102, 162, 237, 308, 350
SstI	GAGCTC	1 cut(s)	480
StyD4I	CCNGG	2 cut(s)	144, 398
StyI	CCWWGG	3 cut(s)	165, 240, 411
TaiI	ACGT	2 cut(s)	110, 407
TaqI	TCGA	1 cut(s)	492
TaqII	GACCGA	1 cut(s)	395
TasI	AATT	1 cut(s)	83
TauI	GCSGC	1 cut(s)	311
TfiI	GAWTC	2 cut(s)	247, 461
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TseI	GCWGC	1 cut(s)	313
TspDTI	ATGAA	2 cut(s)	17, 169
TspGWI	ACGGA	1 cut(s)	240
VpaK11BI	GGWCC	1 cut(s)	454
XapI	RAATTY	1 cut(s)	83
XmnI	GAANNNNTTC	2 cut(s)	176, 326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.