Rh5DG006800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0009277
Physical Location & Seq
Forward (+)
423718 .. 425601
1884 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG006800.1

Sequence Viewer

Length: 1146 bp
ATGAAGCCCTCGTCGCGCTACAGCTCCTACGATGCACGCTCCTCCACCGCGACCCACCACTCCTACCCGTCCTCCTCCGCCGAATTCAAGCCCAAGCACCCCGCCACGTCCTCCTCACGCGCCGTCGTCAAATCCAAGCCCTCCCCGGATCCCAACCTCACCACCATGGTGAAAAAGTTCATGGAAAAGCGCTCCTCCTCCTCGTCCAAGCCCAAGCCGATTAACGGCACCGCCTTGGTGATTCCGTCAGATGTGATCGCCGACGGCATGAAAAAGACGGCAAAAAATGGCTCCAACTTCGCGGCGCTGCACAGGAAGCTCTTCGGGAAAGCCACGGGATCGGCGGACAAGAAGAAGGAGGTCAAGGCGTTGACCGAGGTCAAAGGGAACACCAGGACGTTGGCCATGGTGTTGAGAAGTGAGAGAGAGCTTCTCAGTCTGAATAAGGACCAAGAATCGGAGATCGCCGAGCTCAAGTTGATGCTCCAAGAGAAGAACAAAGAAGTGGACAAATTGAAGGACCTGTGTTTGAAGCAAAGGGAGGAAATCAAATCGTTGAAGAGCACGATTTTGTTCCCGGATGTTATGAATTCTCAGCTTCAAGAGTTGCTAGAGAAGCAAGGGTCAGAGCTGAAGCAAGCCAAACAAGTAATCCCAAATCTTCAAAGGCAGGTCACTTCTCTCACTGGCCAGCTCCAATGCCTTGCAGTGGATCTTGCTGAGGTGAAAGCAGACAAACAGTCGGTTAGGGCATGTTTTCAAAGTGATGACAGTATTCCCAGAACTCCAACGTATCATCAGAAAGAATCTTTGAATTCTCTGGAGTTCAGCTCTTGTGATCCAACCAGCCCTGGTAGTCCAGATGACATGTTCCTAAAGGATTTAAATCCATGCTTAACACCTTTCTGTGCTAAATCGAAGTCCAAGGAATTTGATGAGATGGGTTACTACTCTCCACATGGCTATGATGAAAGCTTATCTAAAAACAACGTGGAGTTTGGATTTAACTCTTGTGCGAGGAAGTTGACCCGAAGTTCTGACTGCTGCCAAAATTCCGAAACAGAAAGTAGAACAGCTCATGCAAATCGGAGATCTGGTGATGCCCAACGAACATATGGCAATCGAACTCACCGTAATTATTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

381

Amino Acids

42.48

Weight (kDa)

9.28

Isoelectric Point (pI)

50.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 661
AccB1I GGYRCC 1 cut(s) 227
AccII CGCG 4 cut(s) 16, 50, 120, 302
AciI CCGC 6 cut(s) 48, 78, 102, 231, 302, 344
AclWI GGATC 5 cut(s) 143, 156, 346, 720, 833
AcoI YGGCCR 2 cut(s) 402, 688
AcsI RAATTY 5 cut(s) 83, 589, 814, 929, 1051
AcuI CTGAAG 1 cut(s) 653
AfeI AGCGCT 1 cut(s) 191
AfiI CCNNNNNNNGG 3 cut(s) 224, 457, 709
AflIII ACRYGT 1 cut(s) 867
AgsI TTSAA 8 cut(s) 88, 517, 532, 559, 602, 665, 761, 814
AhdI GACNNNNNGTC 1 cut(s) 739
AjiI CACGTC 1 cut(s) 108
AjnI CCWGG 2 cut(s) 392, 850
AleI CACNNNNGTG 1 cut(s) 167
Alw21I GWGCWC 2 cut(s) 474, 566
AlwI GGATC 5 cut(s) 143, 156, 346, 720, 833
Aor51HI AGCGCT 1 cut(s) 191
AoxI GGCC 2 cut(s) 402, 688
ApeKI GCWGC 2 cut(s) 307, 1044
ApoI RAATTY 5 cut(s) 83, 589, 814, 929, 1051
Asp700I GAANNNNTTC 2 cut(s) 176, 320
AspLEI GCGC 4 cut(s) 18, 122, 192, 307
AspS9I GGNCC 2 cut(s) 448, 520
AsuC2I CCSGG 2 cut(s) 146, 578
AsuHPI GGTGA 6 cut(s) 151, 181, 250, 736, 1109, 1121
AvaII GGWCC 2 cut(s) 448, 520
BalI TGGCCA 2 cut(s) 404, 690
BamHI GGATCC 1 cut(s) 148
BanI GGYRCC 1 cut(s) 227
BanII GRGCYC 1 cut(s) 474
Bbv12I GWGCWC 2 cut(s) 474, 566
BbvCI CCTCAGC 1 cut(s) 720
BbvI GCAGC 2 cut(s) 294, 1031
BccI CCATC 1 cut(s) 934
BceAI ACGGC 4 cut(s) 107, 241, 280, 294
BciT130I CCWGG 2 cut(s) 394, 852
BcnI CCSGG 2 cut(s) 146, 578
BfaI CTAG 1 cut(s) 611
BfmI CTRYAG 1 cut(s) 19
BfoI RGCGCY 2 cut(s) 193, 308
BfuAI ACCTGC 1 cut(s) 661
BglII AGATCT 1 cut(s) 1091
BisI GCNGC 3 cut(s) 303, 308, 1045
BlsI GCNGC 3 cut(s) 304, 309, 1046
Bme1390I CCNGG 4 cut(s) 146, 394, 578, 852
Bme18I GGWCC 2 cut(s) 448, 520
BmeRI GACNNNNNGTC 1 cut(s) 739
BmgBI CACGTC 1 cut(s) 108
BmgT120I GGNCC 2 cut(s) 448, 520
BmiI GGNNCC 3 cut(s) 150, 229, 292
BmrFI CCNGG 4 cut(s) 146, 394, 578, 852
BmsI GCATC 3 cut(s) 22, 471, 1090
BoxI GACNNNNGTC 1 cut(s) 377
BplI GAGNNNNNCTC 4 cut(s) 417, 449, 815, 847
BpmI CTGGAG 1 cut(s) 842
Bpu10I CCTNAGC 1 cut(s) 720
BpuEI CTTGAG 1 cut(s) 458
BpuMI CCSGG 2 cut(s) 146, 578
BsaBI GATNNNNATC 1 cut(s) 885
BsaJI CCNNGG 8 cut(s) 144, 165, 234, 333, 375, 405, 850, 924
BsaXI ACNNNNNCTCC 4 cut(s) 56, 86, 1081, 1111
Bsc4I CCNNNNNNNGG 3 cut(s) 224, 457, 709
Bse1I ACTGG 1 cut(s) 691
Bse8I GATNNNNATC 1 cut(s) 885
BseBI CCWGG 2 cut(s) 394, 852
BseDI CCNNGG 8 cut(s) 144, 165, 234, 333, 375, 405, 850, 924
BseGI GGATG 1 cut(s) 586
BseJI GATNNNNATC 1 cut(s) 885
BseLI CCNNNNNNNGG 3 cut(s) 224, 457, 709
BseMII CTCAG 3 cut(s) 448, 608, 711
BseNI ACTGG 1 cut(s) 691
BseRI GAGGAG 6 cut(s) 31, 64, 103, 184, 187, 190
BseXI GCAGC 2 cut(s) 294, 1031
BsgI GTGCAG 1 cut(s) 293
Bsh1236I CGCG 4 cut(s) 16, 50, 120, 302
BshFI GGCC 2 cut(s) 404, 690
BshNI GGYRCC 1 cut(s) 227
BsiHKAI GWGCWC 2 cut(s) 474, 566
BsiSI CCGG 2 cut(s) 146, 578
BslI CCNNNNNNNGG 3 cut(s) 224, 457, 709
BsnI GGCC 2 cut(s) 404, 690
Bsp1286I GDGCHC 2 cut(s) 474, 566
Bsp143I GATC 7 cut(s) 148, 255, 338, 462, 712, 838, 1091
Bsp19I CCATGG 2 cut(s) 165, 405
BspACI CCGC 6 cut(s) 48, 78, 102, 231, 302, 344
BspANI GGCC 2 cut(s) 404, 690
BspCNI CTCAG 3 cut(s) 447, 607, 712
BspFNI CGCG 4 cut(s) 16, 50, 120, 302
BspLI GGNNCC 3 cut(s) 150, 229, 292
BspMI ACCTGC 1 cut(s) 661
BspPI GGATC 5 cut(s) 143, 156, 346, 720, 833
BspQI GCTCTTC 2 cut(s) 326, 554
BspT107I GGYRCC 1 cut(s) 227
BsrI ACTGG 1 cut(s) 691
BssECI CCNNGG 8 cut(s) 144, 165, 234, 333, 375, 405, 850, 924
BssMI GATC 7 cut(s) 148, 255, 338, 462, 712, 838, 1091
BssT1I CCWWGG 4 cut(s) 165, 234, 405, 924
Bst2UI CCWGG 2 cut(s) 394, 852
Bst4CI ACNGT 3 cut(s) 741, 773, 1133
Bst6I CTCTTC 2 cut(s) 326, 554
BstC8I GCNNGC 3 cut(s) 37, 639, 692
BstDEI CTNAG 3 cut(s) 434, 594, 720
BstDSI CCRYGG 3 cut(s) 165, 333, 405
BstF5I GGATG 1 cut(s) 586
BstFNI CGCG 4 cut(s) 16, 50, 120, 302
BstH2I RGCGCY 2 cut(s) 193, 308
BstHHI GCGC 4 cut(s) 18, 122, 192, 307
BstKTI GATC 7 cut(s) 151, 258, 341, 465, 715, 841, 1094
BstMBI GATC 7 cut(s) 148, 255, 338, 462, 712, 838, 1091
BstMWI GCNNNNNNNGC 3 cut(s) 13, 316, 616
BstNI CCWGG 2 cut(s) 394, 852
BstNSI RCATGY 2 cut(s) 756, 871
BstPAI GACNNNNGTC 1 cut(s) 377
BstSCI CCNGG 4 cut(s) 144, 392, 576, 850
BstSFI CTRYAG 1 cut(s) 19
BstUI CGCG 4 cut(s) 16, 50, 120, 302
BstV1I GCAGC 2 cut(s) 294, 1031
BstX2I RGATCY 3 cut(s) 148, 712, 1091
BstXI CCANNNNNNTGG 1 cut(s) 400
BstYI RGATCY 3 cut(s) 148, 712, 1091
BsuRI GGCC 2 cut(s) 404, 690
BtgI CCRYGG 3 cut(s) 165, 333, 405
BtrI CACGTC 1 cut(s) 108
BtsCI GGATG 1 cut(s) 586
BtsI GCAGTG 1 cut(s) 714
BtsIMutI CAGTG 2 cut(s) 684, 714
BveI ACCTGC 1 cut(s) 661
Cac8I GCNNGC 3 cut(s) 37, 639, 692
CfoI GCGC 4 cut(s) 18, 122, 192, 307
Cfr13I GGNCC 2 cut(s) 448, 520
CviAII CATG 9 cut(s) 166, 181, 268, 406, 753, 868, 891, 959, 1079
DdeI CTNAG 3 cut(s) 434, 594, 720
DpnI GATC 7 cut(s) 150, 257, 340, 464, 714, 840, 1093
DpnII GATC 7 cut(s) 148, 255, 338, 462, 712, 838, 1091
DraI TTTAAA 1 cut(s) 885
DriI GACNNNNNGTC 1 cut(s) 739
EaeI YGGCCR 2 cut(s) 402, 688
Eam1104I CTCTTC 2 cut(s) 326, 554
Eam1105I GACNNNNNGTC 1 cut(s) 739
EarI CTCTTC 2 cut(s) 326, 554
EciI GGCGGA 2 cut(s) 67, 359
Ecl136II GAGCTC 1 cut(s) 472
Eco130I CCWWGG 4 cut(s) 165, 234, 405, 924
Eco24I GRGCYC 1 cut(s) 474
Eco47I GGWCC 2 cut(s) 448, 520
Eco47III AGCGCT 1 cut(s) 191
Eco53kI GAGCTC 1 cut(s) 472
Eco57I CTGAAG 1 cut(s) 653
EcoICRI GAGCTC 1 cut(s) 472
EcoO109I RGGNCCY 1 cut(s) 520
EcoRI GAATTC 3 cut(s) 83, 589, 814
EcoRII CCWGG 2 cut(s) 392, 850
EcoT14I CCWWGG 4 cut(s) 165, 234, 405, 924
EcoT38I GRGCYC 1 cut(s) 474
ErhI CCWWGG 4 cut(s) 165, 234, 405, 924
FaeI CATG 9 cut(s) 169, 184, 271, 409, 756, 871, 894, 962, 1082
FatI CATG 9 cut(s) 165, 180, 267, 405, 752, 867, 890, 958, 1078
FauI CCCGC 1 cut(s) 109
FauNDI CATATG 1 cut(s) 1114
Fnu4HI GCNGC 3 cut(s) 303, 308, 1045
FokI GGATG 1 cut(s) 593
FriOI GRGCYC 1 cut(s) 474
Fsp4HI GCNGC 3 cut(s) 303, 308, 1045
FspBI CTAG 1 cut(s) 611
GlaI GCGC 4 cut(s) 17, 121, 191, 306
GluI GCNGC 3 cut(s) 303, 308, 1045
GsuI CTGGAG 1 cut(s) 842
HaeII RGCGCY 2 cut(s) 193, 308
HaeIII GGCC 2 cut(s) 404, 690
HapII CCGG 2 cut(s) 146, 578
HhaI GCGC 4 cut(s) 18, 122, 192, 307
Hin1II CATG 9 cut(s) 169, 184, 271, 409, 756, 871, 894, 962, 1082
Hin6I GCGC 4 cut(s) 16, 120, 190, 305
HinP1I GCGC 4 cut(s) 16, 120, 190, 305
HincII GTYRAC 2 cut(s) 372, 1026
HindII GTYRAC 2 cut(s) 372, 1026
HindIII AAGCTT 1 cut(s) 973
HinfI GANTC 3 cut(s) 241, 455, 806
HpaII CCGG 2 cut(s) 146, 578
HphI GGTGA 6 cut(s) 151, 181, 250, 736, 1109, 1121
Hpy166II GTNNAC 3 cut(s) 372, 508, 1026
Hpy188I TCNGA 8 cut(s) 250, 441, 460, 628, 801, 1039, 1057, 1089
Hpy188III TCNNGA 4 cut(s) 325, 602, 821, 860
Hpy8I GTNNAC 3 cut(s) 372, 508, 1026
Hpy99I CGWCG 3 cut(s) 16, 128, 266
HpyAV CCTTC 2 cut(s) 349, 511
HpyCH4III ACNGT 3 cut(s) 741, 773, 1133
HpyCH4IV ACGT 4 cut(s) 107, 398, 791, 990
HpyCH4V TGCA 4 cut(s) 35, 310, 707, 1082
HpyF10VI GCNNNNNNNGC 3 cut(s) 13, 316, 616
HpyF3I CTNAG 3 cut(s) 434, 594, 720
HpySE526I ACGT 4 cut(s) 107, 398, 791, 990
Hsp92II CATG 9 cut(s) 169, 184, 271, 409, 756, 871, 894, 962, 1082
HspAI GCGC 4 cut(s) 16, 120, 190, 305
Kzo9I GATC 7 cut(s) 148, 255, 338, 462, 712, 838, 1091
LguI GCTCTTC 2 cut(s) 326, 554
LmnI GCTCC 6 cut(s) 29, 44, 197, 296, 489, 699
Lsp1109I GCAGC 2 cut(s) 294, 1031
LweI GCATC 3 cut(s) 22, 471, 1090
MaeI CTAG 1 cut(s) 611
MaeII ACGT 4 cut(s) 107, 398, 791, 990
MaeIII GTNAC 2 cut(s) 673, 944
MalI GATC 7 cut(s) 150, 257, 340, 464, 714, 840, 1093
MboI GATC 7 cut(s) 148, 255, 338, 462, 712, 838, 1091
MboII GAAGA 5 cut(s) 313, 364, 505, 571, 653
MflI RGATCY 3 cut(s) 148, 712, 1091
MhlI GDGCHC 2 cut(s) 474, 566
MlsI TGGCCA 2 cut(s) 404, 690
MluCI AATT 7 cut(s) 83, 512, 589, 814, 929, 1051, 1135
MluNI TGGCCA 2 cut(s) 404, 690
MmeI TCCRAC 3 cut(s) 318, 812, 866
Mox20I TGGCCA 2 cut(s) 404, 690
MroXI GAANNNNTTC 2 cut(s) 176, 320
MscI TGGCCA 2 cut(s) 404, 690
MseI TTAA 4 cut(s) 222, 884, 896, 1005
MslI CAYNNNNRTG 3 cut(s) 164, 167, 963
Msp20I TGGCCA 2 cut(s) 404, 690
MspI CCGG 2 cut(s) 146, 578
MspR9I CCNGG 4 cut(s) 146, 394, 578, 852
MvaI CCWGG 2 cut(s) 394, 852
MvnI CGCG 4 cut(s) 16, 50, 120, 302
MwoI GCNNNNNNNGC 3 cut(s) 13, 316, 616
NciI CCSGG 2 cut(s) 146, 578
NcoI CCATGG 2 cut(s) 165, 405
NdeI CATATG 1 cut(s) 1114
NdeII GATC 7 cut(s) 148, 255, 338, 462, 712, 838, 1091
NlaIII CATG 9 cut(s) 169, 184, 271, 409, 756, 871, 894, 962, 1082
NlaIV GGNNCC 3 cut(s) 150, 229, 292
NmeAIII GCCGAG 1 cut(s) 493
NmuCI GTSAC 1 cut(s) 673
NspI RCATGY 2 cut(s) 756, 871
OliI CACNNNNGTG 1 cut(s) 167
PciI ACATGT 1 cut(s) 867
PciSI GCTCTTC 2 cut(s) 326, 554
PcsI WCGNNNNNNNCGW 1 cut(s) 1129
PdmI GAANNNNTTC 2 cut(s) 176, 320
PfeI GAWTC 3 cut(s) 241, 455, 806
PfoI TCCNGGA 1 cut(s) 576
PkrI GCNGC 3 cut(s) 304, 309, 1046
PpuMI RGGWCCY 1 cut(s) 520
PscI ACATGT 1 cut(s) 867
PshAI GACNNNNGTC 1 cut(s) 377
Psp124BI GAGCTC 1 cut(s) 474
Psp5II RGGWCCY 1 cut(s) 520
Psp6I CCWGG 2 cut(s) 392, 850
PspGI CCWGG 2 cut(s) 392, 850
PspN4I GGNNCC 3 cut(s) 150, 229, 292
PspPI GGNCC 2 cut(s) 448, 520
PspPPI RGGWCCY 1 cut(s) 520
PsuI RGATCY 3 cut(s) 148, 712, 1091
RseI CAYNNNNRTG 3 cut(s) 164, 167, 963
SacI GAGCTC 1 cut(s) 474
SapI GCTCTTC 2 cut(s) 326, 554
SaqAI TTAA 4 cut(s) 222, 884, 896, 1005
SatI GCNGC 3 cut(s) 303, 308, 1045
Sau3AI GATC 7 cut(s) 148, 255, 338, 462, 712, 838, 1091
Sau96I GGNCC 2 cut(s) 448, 520
ScrFI CCNGG 4 cut(s) 146, 394, 578, 852
SduI GDGCHC 2 cut(s) 474, 566
SfaNI GCATC 3 cut(s) 22, 471, 1090
SfcI CTRYAG 1 cut(s) 19
SinI GGWCC 2 cut(s) 448, 520
SmiI ATTTAAAT 1 cut(s) 885
SmiMI CAYNNNNRTG 3 cut(s) 164, 167, 963
SmlI CTYRAG 1 cut(s) 473
SmoI CTYRAG 1 cut(s) 473
Sse9I AATT 7 cut(s) 83, 512, 589, 814, 929, 1051, 1135
SsiI CCGC 6 cut(s) 48, 78, 102, 231, 302, 344
SspMI CTAG 1 cut(s) 611
SstI GAGCTC 1 cut(s) 474
StyD4I CCNGG 4 cut(s) 144, 392, 576, 850
StyI CCWWGG 4 cut(s) 165, 234, 405, 924
SwaI ATTTAAAT 1 cut(s) 885
TaaI ACNGT 3 cut(s) 741, 773, 1133
TaiI ACGT 4 cut(s) 110, 401, 794, 993
TaqI TCGA 2 cut(s) 917, 1123
TaqII GACCGA 1 cut(s) 389
TasI AATT 7 cut(s) 83, 512, 589, 814, 929, 1051, 1135
TauI GCSGC 1 cut(s) 305
TfiI GAWTC 3 cut(s) 241, 455, 806
Tru1I TTAA 4 cut(s) 222, 884, 896, 1005
Tru9I TTAA 4 cut(s) 222, 884, 896, 1005
TscAI CASTG 2 cut(s) 691, 714
TseFI GTSAC 1 cut(s) 673
TseI GCWGC 2 cut(s) 307, 1044
Tsp45I GTSAC 1 cut(s) 673
TspDTI ATGAA 5 cut(s) 17, 169, 284, 602, 984
TspGWI ACGGA 1 cut(s) 234
TspRI CASTG 2 cut(s) 691, 714
VpaK11BI GGWCC 2 cut(s) 448, 520
XapI RAATTY 5 cut(s) 83, 589, 814, 929, 1051
XceI RCATGY 2 cut(s) 756, 871
XcmI CCANNNNNNNNNTGG 1 cut(s) 1112
XmnI GAANNNNTTC 2 cut(s) 176, 320
XspI CTAG 1 cut(s) 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.