Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0009277

Physical Location & Seq

Genomic Coordinates Forward (+)

447940 .. 451192

Gene Structure 3253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG006800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGAAGCCCTCGTCGCGCTACAGCTCCTACGATGCACGCTCCTCCACCGCGTCCCACCACTCCTACCCGTCCTCCTCTGCCGAATTCAAGCCCAAGCACCCCGCCACGTCCTCCTCACGCGCCGTCGTCAAATCCAAGCCCTCCCCGGATCCCAACCTCACCACCATGGTGAAAAAGTTCATGGAAAAGCGCTCCTCGTCCAAGCCCAAGCCGATTAACGGCACCGCCTTGGTGATTCCGTCCGATGTGATCGCCGACGACCTGAAAAAGACGGCAAAAAATGGCTCCAACTTCGCGGCGCTGCACAGGAAGCTCTTCGGGAAAGCCACGGGATCGGCGGACAAGAAGAAGGAGGTCAAGGCGTTGACCGAGGTCAAAGGGAACACCAGGACGTTGGCCATGGTGTTGAGAAGTGAGAGAGAGCTTCTCAGTCTGAATAAGGACCAAGAATCGGACATCGCCGAGCTCAGGTTGATGCTCGAAGAGAAGAACAAAGAAGTGGACAAATTGAAGGACTTGTGTTTGAAGCAAAGGGAGGAAATCAAATCGTTGAAGAGCACGATTTTGTTCCCGGATGTTATGAATTCTCAGCTTCAAGAGTTGCTAGAGAAGCAAGGGTCAGAGCTGAAGCAAGCCAAACAAGTAATCCCAAATCTTCAAAGGCAGGTCACTTCTCTCACTGGCCAGCTCCAATGCCTTGCGGTGGATCTTGCTGAGGTGAAAGCAGACAAACATTCGGTTAGGGCATGTTTTCAAAGTGATGACAGTATTCCCAGAACTCCAACGTATCATAAGAAAGAATCTTTGAATTCTCTGGTAAGCAAACCGCTATCAGCAACTTTTTTACTTTTGTTGGCGAGTTTTAGTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

290

Amino Acids

32.13

Weight (kDa)

9.66

Isoelectric Point (pI)

41.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17240 AT4G17240
fragaria_vesca	FvH4_3g00551 FvH4_3g00551 FvH4_3g00551 FvH4_3g00551
malus_domestica	MD00G1058000.v1.1 MD10G1336700.v1.1
prunus_persica	Prupe.4G006700_v2.0.a1
pyrus_communis	pycom05g32610 pycom10g28620
rosa_chinensis	RchiOBHm_Chr5g0000761
rosa_laevigata	RLG00000030893
rosa_multiflora	Rmu_sc0000255.1_g000006 Rmu_sc0011992.1_g000004
rosa_roxburghii	Rroxscaffold_1G00075470
rosa_rugosa	Rorug04G0386200
rosa_samantha	Rh5AG006300 Rh5BG008100 Rh5CG006800 Rh5DG006800
rosa_wichuraiana	Rw5G000640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	655
AccB1I	GGYRCC	1 cut(s)	221
AccII	CGCG	4 cut(s)	16, 50, 120, 296
AciI	CCGC	7 cut(s)	48, 102, 225, 296, 338, 701, 827
AclWI	GGATC	4 cut(s)	143, 156, 340, 714
AcoI	YGGCCR	2 cut(s)	396, 682
AcsI	RAATTY	3 cut(s)	83, 583, 808
AcuI	CTGAAG	1 cut(s)	647
AfeI	AGCGCT	1 cut(s)	191
AfiI	CCNNNNNNNGG	4 cut(s)	218, 451, 468, 703
AgsI	TTSAA	8 cut(s)	88, 511, 526, 553, 596, 659, 755, 808
AjiI	CACGTC	1 cut(s)	108
AjnI	CCWGG	1 cut(s)	386
AleI	CACNNNNGTG	1 cut(s)	167
AluBI	AGCT	7 cut(s)	24, 313, 424, 466, 592, 625, 688
AluI	AGCT	7 cut(s)	24, 313, 424, 466, 592, 625, 688
Alw21I	GWGCWC	2 cut(s)	468, 560
AlwI	GGATC	4 cut(s)	143, 156, 340, 714
Aor51HI	AGCGCT	1 cut(s)	191
AoxI	GGCC	2 cut(s)	396, 682
ApeKI	GCWGC	1 cut(s)	301
ApoI	RAATTY	3 cut(s)	83, 583, 808
Asp700I	GAANNNNTTC	2 cut(s)	176, 314
AspLEI	GCGC	4 cut(s)	18, 122, 192, 301
AspS9I	GGNCC	1 cut(s)	442
AsuC2I	CCSGG	2 cut(s)	146, 572
AsuHPI	GGTGA	4 cut(s)	151, 181, 244, 730
AvaII	GGWCC	1 cut(s)	442
BalI	TGGCCA	2 cut(s)	398, 684
BamHI	GGATCC	1 cut(s)	148
BanI	GGYRCC	1 cut(s)	221
BanII	GRGCYC	1 cut(s)	468
Bbv12I	GWGCWC	2 cut(s)	468, 560
BbvCI	CCTCAGC	1 cut(s)	714
BbvI	GCAGC	1 cut(s)	288
BceAI	ACGGC	3 cut(s)	107, 235, 288
BciT130I	CCWGG	1 cut(s)	388
BcnI	CCSGG	2 cut(s)	146, 572
BfaI	CTAG	1 cut(s)	605
BfmI	CTRYAG	1 cut(s)	19
BfoI	RGCGCY	2 cut(s)	193, 302
BfuAI	ACCTGC	1 cut(s)	655
BisI	GCNGC	2 cut(s)	297, 302
BlsI	GCNGC	2 cut(s)	298, 303
Bme1390I	CCNGG	3 cut(s)	146, 388, 572
Bme18I	GGWCC	1 cut(s)	442
BmgBI	CACGTC	1 cut(s)	108
BmgT120I	GGNCC	1 cut(s)	442
BmiI	GGNNCC	3 cut(s)	150, 223, 286
BmrFI	CCNGG	3 cut(s)	146, 388, 572
BmsI	GCATC	2 cut(s)	22, 465
BoxI	GACNNNNGTC	1 cut(s)	371
BplI	GAGNNNNNCTC	2 cut(s)	411, 443
Bpu10I	CCTNAGC	2 cut(s)	467, 714
BpuMI	CCSGG	2 cut(s)	146, 572
BsaJI	CCNNGG	6 cut(s)	144, 165, 228, 327, 369, 399
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bsc4I	CCNNNNNNNGG	4 cut(s)	218, 451, 468, 703
Bse1I	ACTGG	1 cut(s)	685
BseBI	CCWGG	1 cut(s)	388
BseDI	CCNNGG	6 cut(s)	144, 165, 228, 327, 369, 399
BseGI	GGATG	1 cut(s)	580
BseLI	CCNNNNNNNGG	4 cut(s)	218, 451, 468, 703
BseMII	CTCAG	4 cut(s)	442, 481, 602, 705
BseNI	ACTGG	1 cut(s)	685
BseRI	GAGGAG	4 cut(s)	31, 64, 103, 184
BseXI	GCAGC	1 cut(s)	288
BsgI	GTGCAG	1 cut(s)	287
Bsh1236I	CGCG	4 cut(s)	16, 50, 120, 296
BshFI	GGCC	2 cut(s)	398, 684
BshNI	GGYRCC	1 cut(s)	221
BsiHKAI	GWGCWC	2 cut(s)	468, 560
BsiSI	CCGG	2 cut(s)	146, 572
BslFI	GGGAC	1 cut(s)	37
BslI	CCNNNNNNNGG	4 cut(s)	218, 451, 468, 703
BsmFI	GGGAC	1 cut(s)	37
BsnI	GGCC	2 cut(s)	398, 684
Bsp1286I	GDGCHC	2 cut(s)	468, 560
Bsp143I	GATC	4 cut(s)	148, 249, 332, 706
Bsp19I	CCATGG	2 cut(s)	165, 399
BspACI	CCGC	7 cut(s)	48, 102, 225, 296, 338, 701, 827
BspANI	GGCC	2 cut(s)	398, 684
BspCNI	CTCAG	4 cut(s)	441, 480, 601, 706
BspFNI	CGCG	4 cut(s)	16, 50, 120, 296
BspLI	GGNNCC	3 cut(s)	150, 223, 286
BspMI	ACCTGC	1 cut(s)	655
BspPI	GGATC	4 cut(s)	143, 156, 340, 714
BspQI	GCTCTTC	2 cut(s)	320, 548
BspT107I	GGYRCC	1 cut(s)	221
BsrI	ACTGG	1 cut(s)	685
BssECI	CCNNGG	6 cut(s)	144, 165, 228, 327, 369, 399
BssMI	GATC	4 cut(s)	148, 249, 332, 706
BssT1I	CCWWGG	3 cut(s)	165, 228, 399
Bst2UI	CCWGG	1 cut(s)	388
Bst4CI	ACNGT	1 cut(s)	767
Bst6I	CTCTTC	3 cut(s)	320, 477, 548
BstC8I	GCNNGC	3 cut(s)	37, 633, 686
BstDEI	CTNAG	4 cut(s)	428, 467, 588, 714
BstDSI	CCRYGG	3 cut(s)	165, 327, 399
BstF5I	GGATG	1 cut(s)	580
BstFNI	CGCG	4 cut(s)	16, 50, 120, 296
BstH2I	RGCGCY	2 cut(s)	193, 302
BstHHI	GCGC	4 cut(s)	18, 122, 192, 301
BstKTI	GATC	4 cut(s)	151, 252, 335, 709
BstMBI	GATC	4 cut(s)	148, 249, 332, 706
BstMWI	GCNNNNNNNGC	3 cut(s)	13, 310, 610
BstNI	CCWGG	1 cut(s)	388
BstNSI	RCATGY	1 cut(s)	750
BstPAI	GACNNNNGTC	1 cut(s)	371
BstSCI	CCNGG	3 cut(s)	144, 386, 570
BstSFI	CTRYAG	1 cut(s)	19
BstUI	CGCG	4 cut(s)	16, 50, 120, 296
BstV1I	GCAGC	1 cut(s)	288
BstX2I	RGATCY	2 cut(s)	148, 706
BstXI	CCANNNNNNTGG	1 cut(s)	394
BstYI	RGATCY	2 cut(s)	148, 706
BsuRI	GGCC	2 cut(s)	398, 684
BtgI	CCRYGG	3 cut(s)	165, 327, 399
BtgZI	GCGATG	1 cut(s)	442
BtrI	CACGTC	1 cut(s)	108
BtsCI	GGATG	1 cut(s)	580
BtsIMutI	CAGTG	1 cut(s)	678
BveI	ACCTGC	1 cut(s)	655
Cac8I	GCNNGC	3 cut(s)	37, 633, 686
CfoI	GCGC	4 cut(s)	18, 122, 192, 301
Cfr13I	GGNCC	1 cut(s)	442
CseI	GACGC	1 cut(s)	39
CviAII	CATG	4 cut(s)	166, 181, 400, 747
DdeI	CTNAG	4 cut(s)	428, 467, 588, 714
DpnI	GATC	4 cut(s)	150, 251, 334, 708
DpnII	GATC	4 cut(s)	148, 249, 332, 706
EaeI	YGGCCR	2 cut(s)	396, 682
Eam1104I	CTCTTC	3 cut(s)	320, 477, 548
EarI	CTCTTC	3 cut(s)	320, 477, 548
EciI	GGCGGA	1 cut(s)	353
Ecl136II	GAGCTC	1 cut(s)	466
Eco130I	CCWWGG	3 cut(s)	165, 228, 399
Eco24I	GRGCYC	1 cut(s)	468
Eco47I	GGWCC	1 cut(s)	442
Eco47III	AGCGCT	1 cut(s)	191
Eco53kI	GAGCTC	1 cut(s)	466
Eco57I	CTGAAG	1 cut(s)	647
EcoICRI	GAGCTC	1 cut(s)	466
EcoRI	GAATTC	3 cut(s)	83, 583, 808
EcoRII	CCWGG	1 cut(s)	386
EcoT14I	CCWWGG	3 cut(s)	165, 228, 399
EcoT38I	GRGCYC	1 cut(s)	468
ErhI	CCWWGG	3 cut(s)	165, 228, 399
FaeI	CATG	4 cut(s)	169, 184, 403, 750
FaiI	YATR	6 cut(s)	167, 182, 401, 581, 748, 792
FaqI	GGGAC	1 cut(s)	37
FatI	CATG	4 cut(s)	165, 180, 399, 746
FauI	CCCGC	1 cut(s)	109
Fnu4HI	GCNGC	2 cut(s)	297, 302
FokI	GGATG	1 cut(s)	587
FriOI	GRGCYC	1 cut(s)	468
Fsp4HI	GCNGC	2 cut(s)	297, 302
FspBI	CTAG	1 cut(s)	605
GlaI	GCGC	4 cut(s)	17, 121, 191, 300
GluI	GCNGC	2 cut(s)	297, 302
HaeII	RGCGCY	2 cut(s)	193, 302
HaeIII	GGCC	2 cut(s)	398, 684
HapII	CCGG	2 cut(s)	146, 572
HgaI	GACGC	1 cut(s)	39
HhaI	GCGC	4 cut(s)	18, 122, 192, 301
Hin1II	CATG	4 cut(s)	169, 184, 403, 750
Hin6I	GCGC	4 cut(s)	16, 120, 190, 299
HinP1I	GCGC	4 cut(s)	16, 120, 190, 299
HincII	GTYRAC	1 cut(s)	366
HindII	GTYRAC	1 cut(s)	366
HinfI	GANTC	3 cut(s)	235, 449, 800
HpaII	CCGG	2 cut(s)	146, 572
HphI	GGTGA	4 cut(s)	151, 181, 244, 730
Hpy166II	GTNNAC	2 cut(s)	366, 502
Hpy188I	TCNGA	4 cut(s)	244, 435, 454, 622
Hpy188III	TCNNGA	2 cut(s)	319, 596
Hpy8I	GTNNAC	2 cut(s)	366, 502
Hpy99I	CGWCG	3 cut(s)	16, 128, 260
HpyAV	CCTTC	2 cut(s)	343, 505
HpyCH4III	ACNGT	1 cut(s)	767
HpyCH4IV	ACGT	3 cut(s)	107, 392, 785
HpyCH4V	TGCA	2 cut(s)	35, 304
HpyF10VI	GCNNNNNNNGC	3 cut(s)	13, 310, 610
HpyF3I	CTNAG	4 cut(s)	428, 467, 588, 714
HpySE526I	ACGT	3 cut(s)	107, 392, 785
Hsp92II	CATG	4 cut(s)	169, 184, 403, 750
HspAI	GCGC	4 cut(s)	16, 120, 190, 299
Kzo9I	GATC	4 cut(s)	148, 249, 332, 706
LguI	GCTCTTC	2 cut(s)	320, 548
LmnI	GCTCC	5 cut(s)	29, 44, 197, 290, 693
Lsp1109I	GCAGC	1 cut(s)	288
LweI	GCATC	2 cut(s)	22, 465
MaeI	CTAG	1 cut(s)	605
MaeII	ACGT	3 cut(s)	107, 392, 785
MaeIII	GTNAC	1 cut(s)	667
MalI	GATC	4 cut(s)	150, 251, 334, 708
MboI	GATC	4 cut(s)	148, 249, 332, 706
MboII	GAAGA	6 cut(s)	307, 358, 494, 499, 565, 647
MflI	RGATCY	2 cut(s)	148, 706
MhlI	GDGCHC	2 cut(s)	468, 560
MlsI	TGGCCA	2 cut(s)	398, 684
MluCI	AATT	4 cut(s)	83, 506, 583, 808
MluNI	TGGCCA	2 cut(s)	398, 684
MmeI	TCCRAC	2 cut(s)	312, 806
Mox20I	TGGCCA	2 cut(s)	398, 684
MroXI	GAANNNNTTC	2 cut(s)	176, 314
MscI	TGGCCA	2 cut(s)	398, 684
MseI	TTAA	2 cut(s)	216, 871
MslI	CAYNNNNRTG	2 cut(s)	164, 167
Msp20I	TGGCCA	2 cut(s)	398, 684
MspI	CCGG	2 cut(s)	146, 572
MspR9I	CCNGG	3 cut(s)	146, 388, 572
MvaI	CCWGG	1 cut(s)	388
MvnI	CGCG	4 cut(s)	16, 50, 120, 296
MwoI	GCNNNNNNNGC	3 cut(s)	13, 310, 610
NciI	CCSGG	2 cut(s)	146, 572
NcoI	CCATGG	2 cut(s)	165, 399
NdeII	GATC	4 cut(s)	148, 249, 332, 706
NlaIII	CATG	4 cut(s)	169, 184, 403, 750
NlaIV	GGNNCC	3 cut(s)	150, 223, 286
NmeAIII	GCCGAG	1 cut(s)	487
NmuCI	GTSAC	1 cut(s)	667
NspI	RCATGY	1 cut(s)	750
OliI	CACNNNNGTG	1 cut(s)	167
PciSI	GCTCTTC	2 cut(s)	320, 548
PdmI	GAANNNNTTC	2 cut(s)	176, 314
PfeI	GAWTC	3 cut(s)	235, 449, 800
PfoI	TCCNGGA	1 cut(s)	570
PkrI	GCNGC	2 cut(s)	298, 303
PshAI	GACNNNNGTC	1 cut(s)	371
Psp124BI	GAGCTC	1 cut(s)	468
Psp6I	CCWGG	1 cut(s)	386
PspGI	CCWGG	1 cut(s)	386
PspN4I	GGNNCC	3 cut(s)	150, 223, 286
PspPI	GGNCC	1 cut(s)	442
PsuI	RGATCY	2 cut(s)	148, 706
RseI	CAYNNNNRTG	2 cut(s)	164, 167
SacI	GAGCTC	1 cut(s)	468
SapI	GCTCTTC	2 cut(s)	320, 548
SaqAI	TTAA	2 cut(s)	216, 871
SatI	GCNGC	2 cut(s)	297, 302
Sau3AI	GATC	4 cut(s)	148, 249, 332, 706
Sau96I	GGNCC	1 cut(s)	442
ScrFI	CCNGG	3 cut(s)	146, 388, 572
SduI	GDGCHC	2 cut(s)	468, 560
SfaNI	GCATC	2 cut(s)	22, 465
SfcI	CTRYAG	1 cut(s)	19
SinI	GGWCC	1 cut(s)	442
SmiMI	CAYNNNNRTG	2 cut(s)	164, 167
Sse9I	AATT	4 cut(s)	83, 506, 583, 808
SsiI	CCGC	7 cut(s)	48, 102, 225, 296, 338, 701, 827
SspMI	CTAG	1 cut(s)	605
SstI	GAGCTC	1 cut(s)	468
StyD4I	CCNGG	3 cut(s)	144, 386, 570
StyI	CCWWGG	3 cut(s)	165, 228, 399
TaaI	ACNGT	1 cut(s)	767
TaiI	ACGT	3 cut(s)	110, 395, 788
TaqI	TCGA	1 cut(s)	480
TaqII	GACCGA	1 cut(s)	383
TasI	AATT	4 cut(s)	83, 506, 583, 808
TauI	GCSGC	1 cut(s)	299
TfiI	GAWTC	3 cut(s)	235, 449, 800
Tru1I	TTAA	2 cut(s)	216, 871
Tru9I	TTAA	2 cut(s)	216, 871
TscAI	CASTG	1 cut(s)	685
TseFI	GTSAC	1 cut(s)	667
TseI	GCWGC	1 cut(s)	301
Tsp45I	GTSAC	1 cut(s)	667
TspDTI	ATGAA	3 cut(s)	17, 169, 596
TspGWI	ACGGA	1 cut(s)	228
TspRI	CASTG	1 cut(s)	685
VpaK11BI	GGWCC	1 cut(s)	442
XapI	RAATTY	3 cut(s)	83, 583, 808
XceI	RCATGY	1 cut(s)	750
XmnI	GAANNNNTTC	2 cut(s)	176, 314
XspI	CTAG	1 cut(s)	605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.