Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0009277

Physical Location & Seq

Genomic Coordinates Forward (+)

549467 .. 552661

Gene Structure 3195 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG008100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGAAGCCCTCGTCGCGCTACAGCTCCTACGATGCACGCTCCTCCACCGCGTCCCACCACTCCTACCCGTCCTCCTCCGCCGAATTCAAGCCCAAGCACCCCGCCACGTCCTCCTCACGCGCCGTCGTCAAATCCAAGCCCTCCCCGGATCCCAACCTCACCACCATGGTGAAAAAGTTCATGGAAAAGCGCTCCTCCTCCTCCTCCTCGTCCAAGCCCAAGCCGATTGGCGGCACCGCCTTGGTGATTCCGCCCGATGTGATCGCCGACGACCTGAAAAAGACGGCAAAAAATGGCTCCAACTTCGCGGCGCTGCACAGGAAGCTCTTTGGGAAAGCCACGGGATCGGCGGACAAGAAGAAGGAGGTCAAGGCGTTGACCGAGGTCAAAGGGAACACCAGGACGTTGGCCATGGTGTTGAGAAGTGAGAGAGAGCTTCTCAGTCTGAATAAGGACCAAGAATCGGAGATCGCCGAGCTCAAGTTGATGCTCCAAGAGAAGAACAAAGAAGTGGACAAATTGAAGGACTTGTGTCTGAAGCAAAGGGAGGAAATCAAATCGTTGAAGAGCACGATTTTGTTCCCGGATGTTATGAATTCTCAGCTTCAAGAGTTGCTAGAGAAGCAAGGATCAGAGCTGAAGCAAGCCAAACAAGTAATCCCAAATCTTCAGAGGCAGGTCACTTCTCTCACTGGCCAGCTCCAATGCCTTGCAGTGGATCTTGCTGAGGTGAAAGCAGACAAACACTCGGTTAGGGCATGTTTTCAAAGTGATGACAGTATTCCCAGAACTCCAACGTATCATCAGAAAGAATCGTTGAATTCTCTGGTAAGCAAACCGCTATTAGCAACTTTTTTTACTTTGGTTGGCGAGTTTGAGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

294

Amino Acids

32.52

Weight (kDa)

9.52

Isoelectric Point (pI)

45.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17240 AT4G17240
fragaria_vesca	FvH4_3g00551 FvH4_3g00551 FvH4_3g00551 FvH4_3g00551
malus_domestica	MD00G1058000.v1.1 MD10G1336700.v1.1
prunus_persica	Prupe.4G006700_v2.0.a1
pyrus_communis	pycom05g32610 pycom10g28620
rosa_chinensis	RchiOBHm_Chr5g0000761
rosa_laevigata	RLG00000030893
rosa_multiflora	Rmu_sc0000255.1_g000006 Rmu_sc0011992.1_g000004
rosa_roxburghii	Rroxscaffold_1G00075470
rosa_rugosa	Rorug04G0386200
rosa_samantha	Rh5AG006300 Rh5BG008100 Rh5CG006800 Rh5DG006800
rosa_wichuraiana	Rw5G000640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	667
AccB1I	GGYRCC	1 cut(s)	233
AccII	CGCG	4 cut(s)	16, 50, 120, 308
AciI	CCGC	9 cut(s)	48, 78, 102, 231, 237, 251, 308, 350, 839
AclWI	GGATC	5 cut(s)	143, 156, 352, 637, 726
AcoI	YGGCCR	2 cut(s)	408, 694
AcsI	RAATTY	3 cut(s)	83, 595, 820
AcuI	CTGAAG	3 cut(s)	557, 653, 659
AfeI	AGCGCT	1 cut(s)	191
AfiI	CCNNNNNNNGG	3 cut(s)	230, 463, 715
AgsI	TTSAA	6 cut(s)	88, 523, 565, 608, 767, 820
AjiI	CACGTC	1 cut(s)	108
AjnI	CCWGG	1 cut(s)	398
AleI	CACNNNNGTG	1 cut(s)	167
AluBI	AGCT	7 cut(s)	24, 325, 436, 478, 604, 637, 700
AluI	AGCT	7 cut(s)	24, 325, 436, 478, 604, 637, 700
Alw21I	GWGCWC	2 cut(s)	480, 572
AlwI	GGATC	5 cut(s)	143, 156, 352, 637, 726
Aor51HI	AGCGCT	1 cut(s)	191
AoxI	GGCC	2 cut(s)	408, 694
ApeKI	GCWGC	1 cut(s)	313
ApoI	RAATTY	3 cut(s)	83, 595, 820
Asp700I	GAANNNNTTC	1 cut(s)	176
AspLEI	GCGC	4 cut(s)	18, 122, 192, 313
AspS9I	GGNCC	1 cut(s)	454
AsuC2I	CCSGG	2 cut(s)	146, 584
AsuHPI	GGTGA	4 cut(s)	151, 181, 256, 742
AvaII	GGWCC	1 cut(s)	454
BalI	TGGCCA	2 cut(s)	410, 696
BamHI	GGATCC	1 cut(s)	148
BanI	GGYRCC	1 cut(s)	233
BanII	GRGCYC	1 cut(s)	480
Bbv12I	GWGCWC	2 cut(s)	480, 572
BbvCI	CCTCAGC	1 cut(s)	726
BbvI	GCAGC	1 cut(s)	300
BceAI	ACGGC	2 cut(s)	107, 300
BciT130I	CCWGG	1 cut(s)	400
BcnI	CCSGG	2 cut(s)	146, 584
BfaI	CTAG	1 cut(s)	617
BfmI	CTRYAG	1 cut(s)	19
BfoI	RGCGCY	2 cut(s)	193, 314
BfuAI	ACCTGC	1 cut(s)	667
BisI	GCNGC	3 cut(s)	232, 309, 314
BlsI	GCNGC	3 cut(s)	233, 310, 315
Bme1390I	CCNGG	3 cut(s)	146, 400, 584
Bme18I	GGWCC	1 cut(s)	454
BmgBI	CACGTC	1 cut(s)	108
BmgT120I	GGNCC	1 cut(s)	454
BmiI	GGNNCC	3 cut(s)	150, 235, 298
BmrFI	CCNGG	3 cut(s)	146, 400, 584
BmsI	GCATC	2 cut(s)	22, 477
BoxI	GACNNNNGTC	2 cut(s)	383, 531
BplI	GAGNNNNNCTC	2 cut(s)	423, 455
Bpu10I	CCTNAGC	1 cut(s)	726
BpuEI	CTTGAG	1 cut(s)	464
BpuMI	CCSGG	2 cut(s)	146, 584
BsaJI	CCNNGG	6 cut(s)	144, 165, 240, 339, 381, 411
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bsc4I	CCNNNNNNNGG	3 cut(s)	230, 463, 715
Bse1I	ACTGG	1 cut(s)	697
BseBI	CCWGG	1 cut(s)	400
BseDI	CCNNGG	6 cut(s)	144, 165, 240, 339, 381, 411
BseGI	GGATG	1 cut(s)	592
BseLI	CCNNNNNNNGG	3 cut(s)	230, 463, 715
BseMII	CTCAG	3 cut(s)	454, 614, 717
BseNI	ACTGG	1 cut(s)	697
BseRI	GAGGAG	8 cut(s)	31, 64, 103, 184, 187, 190, 193, 196
BseXI	GCAGC	1 cut(s)	300
BsgI	GTGCAG	1 cut(s)	299
Bsh1236I	CGCG	4 cut(s)	16, 50, 120, 308
BshFI	GGCC	2 cut(s)	410, 696
BshNI	GGYRCC	1 cut(s)	233
BsiHKAI	GWGCWC	2 cut(s)	480, 572
BsiSI	CCGG	2 cut(s)	146, 584
BslFI	GGGAC	1 cut(s)	37
BslI	CCNNNNNNNGG	3 cut(s)	230, 463, 715
BsmFI	GGGAC	1 cut(s)	37
BsnI	GGCC	2 cut(s)	410, 696
Bsp1286I	GDGCHC	2 cut(s)	480, 572
Bsp143I	GATC	6 cut(s)	148, 261, 344, 468, 629, 718
Bsp19I	CCATGG	2 cut(s)	165, 411
BspACI	CCGC	9 cut(s)	48, 78, 102, 231, 237, 251, 308, 350, 839
BspANI	GGCC	2 cut(s)	410, 696
BspCNI	CTCAG	3 cut(s)	453, 613, 718
BspFNI	CGCG	4 cut(s)	16, 50, 120, 308
BspLI	GGNNCC	3 cut(s)	150, 235, 298
BspMI	ACCTGC	1 cut(s)	667
BspPI	GGATC	5 cut(s)	143, 156, 352, 637, 726
BspQI	GCTCTTC	1 cut(s)	560
BspT107I	GGYRCC	1 cut(s)	233
BsrI	ACTGG	1 cut(s)	697
BssECI	CCNNGG	6 cut(s)	144, 165, 240, 339, 381, 411
BssMI	GATC	6 cut(s)	148, 261, 344, 468, 629, 718
BssT1I	CCWWGG	3 cut(s)	165, 240, 411
Bst2UI	CCWGG	1 cut(s)	400
Bst4CI	ACNGT	1 cut(s)	779
Bst6I	CTCTTC	1 cut(s)	560
BstC8I	GCNNGC	3 cut(s)	37, 645, 698
BstDEI	CTNAG	3 cut(s)	440, 600, 726
BstDSI	CCRYGG	3 cut(s)	165, 339, 411
BstF5I	GGATG	1 cut(s)	592
BstFNI	CGCG	4 cut(s)	16, 50, 120, 308
BstH2I	RGCGCY	2 cut(s)	193, 314
BstHHI	GCGC	4 cut(s)	18, 122, 192, 313
BstKTI	GATC	6 cut(s)	151, 264, 347, 471, 632, 721
BstMBI	GATC	6 cut(s)	148, 261, 344, 468, 629, 718
BstMWI	GCNNNNNNNGC	3 cut(s)	13, 322, 622
BstNI	CCWGG	1 cut(s)	400
BstNSI	RCATGY	1 cut(s)	762
BstPAI	GACNNNNGTC	2 cut(s)	383, 531
BstSCI	CCNGG	3 cut(s)	144, 398, 582
BstSFI	CTRYAG	1 cut(s)	19
BstUI	CGCG	4 cut(s)	16, 50, 120, 308
BstV1I	GCAGC	1 cut(s)	300
BstX2I	RGATCY	2 cut(s)	148, 718
BstXI	CCANNNNNNTGG	1 cut(s)	406
BstYI	RGATCY	2 cut(s)	148, 718
BsuRI	GGCC	2 cut(s)	410, 696
BtgI	CCRYGG	3 cut(s)	165, 339, 411
BtrI	CACGTC	1 cut(s)	108
BtsCI	GGATG	1 cut(s)	592
BtsI	GCAGTG	1 cut(s)	720
BtsIMutI	CAGTG	2 cut(s)	690, 720
BveI	ACCTGC	1 cut(s)	667
Cac8I	GCNNGC	3 cut(s)	37, 645, 698
CfoI	GCGC	4 cut(s)	18, 122, 192, 313
Cfr13I	GGNCC	1 cut(s)	454
CseI	GACGC	1 cut(s)	39
CviAII	CATG	4 cut(s)	166, 181, 412, 759
DdeI	CTNAG	3 cut(s)	440, 600, 726
DpnI	GATC	6 cut(s)	150, 263, 346, 470, 631, 720
DpnII	GATC	6 cut(s)	148, 261, 344, 468, 629, 718
EaeI	YGGCCR	2 cut(s)	408, 694
Eam1104I	CTCTTC	1 cut(s)	560
EarI	CTCTTC	1 cut(s)	560
EciI	GGCGGA	3 cut(s)	67, 240, 365
Ecl136II	GAGCTC	1 cut(s)	478
Eco130I	CCWWGG	3 cut(s)	165, 240, 411
Eco24I	GRGCYC	1 cut(s)	480
Eco47I	GGWCC	1 cut(s)	454
Eco47III	AGCGCT	1 cut(s)	191
Eco53kI	GAGCTC	1 cut(s)	478
Eco57I	CTGAAG	3 cut(s)	557, 653, 659
EcoICRI	GAGCTC	1 cut(s)	478
EcoRI	GAATTC	3 cut(s)	83, 595, 820
EcoRII	CCWGG	1 cut(s)	398
EcoT14I	CCWWGG	3 cut(s)	165, 240, 411
EcoT38I	GRGCYC	1 cut(s)	480
ErhI	CCWWGG	3 cut(s)	165, 240, 411
FaeI	CATG	4 cut(s)	169, 184, 415, 762
FaiI	YATR	5 cut(s)	167, 182, 413, 593, 760
FaqI	GGGAC	1 cut(s)	37
FatI	CATG	4 cut(s)	165, 180, 411, 758
FauI	CCCGC	1 cut(s)	109
Fnu4HI	GCNGC	3 cut(s)	232, 309, 314
FokI	GGATG	1 cut(s)	599
FriOI	GRGCYC	1 cut(s)	480
Fsp4HI	GCNGC	3 cut(s)	232, 309, 314
FspBI	CTAG	1 cut(s)	617
GlaI	GCGC	4 cut(s)	17, 121, 191, 312
GluI	GCNGC	3 cut(s)	232, 309, 314
HaeII	RGCGCY	2 cut(s)	193, 314
HaeIII	GGCC	2 cut(s)	410, 696
HapII	CCGG	2 cut(s)	146, 584
HgaI	GACGC	1 cut(s)	39
HhaI	GCGC	4 cut(s)	18, 122, 192, 313
Hin1II	CATG	4 cut(s)	169, 184, 415, 762
Hin6I	GCGC	4 cut(s)	16, 120, 190, 311
HinP1I	GCGC	4 cut(s)	16, 120, 190, 311
HincII	GTYRAC	1 cut(s)	378
HindII	GTYRAC	1 cut(s)	378
HinfI	GANTC	3 cut(s)	247, 461, 812
HpaII	CCGG	2 cut(s)	146, 584
HphI	GGTGA	4 cut(s)	151, 181, 256, 742
Hpy166II	GTNNAC	2 cut(s)	378, 514
Hpy188I	TCNGA	6 cut(s)	447, 466, 537, 634, 672, 807
Hpy188III	TCNNGA	1 cut(s)	608
Hpy8I	GTNNAC	2 cut(s)	378, 514
Hpy99I	CGWCG	3 cut(s)	16, 128, 272
HpyAV	CCTTC	2 cut(s)	355, 517
HpyCH4III	ACNGT	1 cut(s)	779
HpyCH4IV	ACGT	3 cut(s)	107, 404, 797
HpyCH4V	TGCA	3 cut(s)	35, 316, 713
HpyF10VI	GCNNNNNNNGC	3 cut(s)	13, 322, 622
HpyF3I	CTNAG	3 cut(s)	440, 600, 726
HpySE526I	ACGT	3 cut(s)	107, 404, 797
Hsp92II	CATG	4 cut(s)	169, 184, 415, 762
HspAI	GCGC	4 cut(s)	16, 120, 190, 311
Kzo9I	GATC	6 cut(s)	148, 261, 344, 468, 629, 718
LguI	GCTCTTC	1 cut(s)	560
LmnI	GCTCC	6 cut(s)	29, 44, 197, 302, 495, 705
Lsp1109I	GCAGC	1 cut(s)	300
LweI	GCATC	2 cut(s)	22, 477
MaeI	CTAG	1 cut(s)	617
MaeII	ACGT	3 cut(s)	107, 404, 797
MaeIII	GTNAC	1 cut(s)	679
MalI	GATC	6 cut(s)	150, 263, 346, 470, 631, 720
MboI	GATC	6 cut(s)	148, 261, 344, 468, 629, 718
MboII	GAAGA	4 cut(s)	370, 511, 577, 659
MflI	RGATCY	2 cut(s)	148, 718
MhlI	GDGCHC	2 cut(s)	480, 572
MlsI	TGGCCA	2 cut(s)	410, 696
MluCI	AATT	4 cut(s)	83, 518, 595, 820
MluNI	TGGCCA	2 cut(s)	410, 696
MmeI	TCCRAC	2 cut(s)	324, 818
Mox20I	TGGCCA	2 cut(s)	410, 696
MroXI	GAANNNNTTC	1 cut(s)	176
MscI	TGGCCA	2 cut(s)	410, 696
MseI	TTAA	1 cut(s)	883
MslI	CAYNNNNRTG	2 cut(s)	164, 167
Msp20I	TGGCCA	2 cut(s)	410, 696
MspI	CCGG	2 cut(s)	146, 584
MspR9I	CCNGG	3 cut(s)	146, 400, 584
MvaI	CCWGG	1 cut(s)	400
MvnI	CGCG	4 cut(s)	16, 50, 120, 308
MwoI	GCNNNNNNNGC	3 cut(s)	13, 322, 622
NciI	CCSGG	2 cut(s)	146, 584
NcoI	CCATGG	2 cut(s)	165, 411
NdeII	GATC	6 cut(s)	148, 261, 344, 468, 629, 718
NlaIII	CATG	4 cut(s)	169, 184, 415, 762
NlaIV	GGNNCC	3 cut(s)	150, 235, 298
NmeAIII	GCCGAG	1 cut(s)	499
NmuCI	GTSAC	1 cut(s)	679
NspI	RCATGY	1 cut(s)	762
OliI	CACNNNNGTG	1 cut(s)	167
PciSI	GCTCTTC	1 cut(s)	560
PdmI	GAANNNNTTC	1 cut(s)	176
PfeI	GAWTC	3 cut(s)	247, 461, 812
PfoI	TCCNGGA	1 cut(s)	582
PkrI	GCNGC	3 cut(s)	233, 310, 315
PshAI	GACNNNNGTC	2 cut(s)	383, 531
Psp124BI	GAGCTC	1 cut(s)	480
Psp6I	CCWGG	1 cut(s)	398
PspGI	CCWGG	1 cut(s)	398
PspN4I	GGNNCC	3 cut(s)	150, 235, 298
PspPI	GGNCC	1 cut(s)	454
PsuI	RGATCY	2 cut(s)	148, 718
RseI	CAYNNNNRTG	2 cut(s)	164, 167
SacI	GAGCTC	1 cut(s)	480
SapI	GCTCTTC	1 cut(s)	560
SaqAI	TTAA	1 cut(s)	883
SatI	GCNGC	3 cut(s)	232, 309, 314
Sau3AI	GATC	6 cut(s)	148, 261, 344, 468, 629, 718
Sau96I	GGNCC	1 cut(s)	454
ScrFI	CCNGG	3 cut(s)	146, 400, 584
SduI	GDGCHC	2 cut(s)	480, 572
SfaNI	GCATC	2 cut(s)	22, 477
SfcI	CTRYAG	1 cut(s)	19
SinI	GGWCC	1 cut(s)	454
SmiMI	CAYNNNNRTG	2 cut(s)	164, 167
SmlI	CTYRAG	1 cut(s)	479
SmoI	CTYRAG	1 cut(s)	479
Sse9I	AATT	4 cut(s)	83, 518, 595, 820
SsiI	CCGC	9 cut(s)	48, 78, 102, 231, 237, 251, 308, 350, 839
SspMI	CTAG	1 cut(s)	617
SstI	GAGCTC	1 cut(s)	480
StyD4I	CCNGG	3 cut(s)	144, 398, 582
StyI	CCWWGG	3 cut(s)	165, 240, 411
TaaI	ACNGT	1 cut(s)	779
TaiI	ACGT	3 cut(s)	110, 407, 800
TaqII	GACCGA	1 cut(s)	395
TasI	AATT	4 cut(s)	83, 518, 595, 820
TauI	GCSGC	2 cut(s)	234, 311
TfiI	GAWTC	3 cut(s)	247, 461, 812
Tru1I	TTAA	1 cut(s)	883
Tru9I	TTAA	1 cut(s)	883
TscAI	CASTG	2 cut(s)	697, 720
TseFI	GTSAC	1 cut(s)	679
TseI	GCWGC	1 cut(s)	313
Tsp45I	GTSAC	1 cut(s)	679
TspDTI	ATGAA	3 cut(s)	17, 169, 608
TspRI	CASTG	2 cut(s)	697, 720
VpaK11BI	GGWCC	1 cut(s)	454
XapI	RAATTY	3 cut(s)	83, 595, 820
XceI	RCATGY	1 cut(s)	762
XmnI	GAANNNNTTC	1 cut(s)	176
XspI	CTAG	1 cut(s)	617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.