Prupe.4G006700_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
361465 .. 363992
2528 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G006700.1

Sequence Viewer

Length: 1338 bp
ATGGCGCAAAAATTTGAATTGAGACAGCGGCAAGACACAGCTGCTGACAGCGCCACGTGTCCTGGAGCTCCTCCTCTTTTTCAAAACCATTCAATAATTCAATTCCAACTTCAAATACTCTCCAGTAGTCGCTCAGTTCCTCCCTCATCCTCAGAAACCCTAGCACTAGCAGAGCTCAGTAAGTCGGCTCAGTGCCTTACAATGAAGCCTTCGTCGCGGTACAGTTCGTACGATGCACGCTCCTCAACCTCGTCGCACTTCTCCGACCCCTCGTCTTCCACTGAGCTCAAGCTCCCCACATCCTCACGCGCCGTCGTCAAATCTAAGGCGTCGGATCCCAACATCGCCACAATGATGAAAAAGTTCATGGAAAAGCGATCCACGTCCAAGGCTAAGCCAATTAAGGCCACGGGCTTGATGATTCCGTCCGATCTAATCGCCGGCGACCTGAAAAATACGGCCAGGAACGGGACGGGTTCGAATTTAACGGCGTTGGGTAGGAAGCTCTTTGGGAAAGGAACAGGGACGACGTCGTCAGATAAGAAAAAGGAGGTCAAAGCGTTGACTGAGGTAAAAGGGAACACCAGGACACTGGCCATGGTGTTAAGAAGTGAGAGAGAGCTTTTGAATCTGAATAAGGAGCAAGAAGTGGAGATTGCCGAGCTCAAGTTAATGCTTGAAGAAAAGAACAGAGAAGTGGATAAATTGAAGGATTTGTGTTTGAAGCAAAGGGAAGAAATCAAATCATTAAAGAATGCGATTTTGTTTCCAGATGTTATGAATTCTCAGCTTCAAGAGATGTTAGAGAAGCAGGGGTCAGAGCTGAAGCAAGCAAAACAAGTAATCCCAAATCTTCAAAGGCAGGTCACTTCCCTTACTGGCCAGCTTCAGTGCCTTGCAGAGGATCTTGCTGAGGTGAAGGCAGATAAATGTTCAGTTAGGGCACGTTTTCAACGTGATGACAGTTCTCCAAGAACCCCAACATATGATGACAATGAACCTTCCAATTCTGTTGAGTTCAGCTCTGGTGATCCAACCAGCCCTGGAAGTCCAGATGACATGTTCCTGAAGGATTTAAATCCTTGCTTGACACCCTATTATGCTAAAACAAAGTCCAAGGAATTTGACGAGATGGGCTATGACTCTCCATATGGACATCATGAAAGCTTATCTCAAAACAAGATGGAGTTTGGATTTAACTTTTGTGCCAAGAAGTTGTCCAGAAGTTCTGATTGTTCCCAGAAGTCCGAAGCAGAAAGCAGAATAGCTCAAGCAAACCGGAGATTGGGTGATGGCAGACGAACTTATGGAAAACAAATTCATCAAAGATTTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

446

Amino Acids

49.45

Weight (kDa)

9.16

Isoelectric Point (pI)

52.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 532
AatII GACGTC 1 cut(s) 533
Acc36I ACCTGC 1 cut(s) 853
AccII CGCG 2 cut(s) 217, 309
AciI CCGC 2 cut(s) 28, 217
AclWI GGATC 5 cut(s) 329, 342, 372, 912, 1025
AcoI YGGCCR 3 cut(s) 459, 594, 880
AcsI RAATTY 5 cut(s) 11, 481, 781, 1121, 1317
AcuI CTGAAG 3 cut(s) 845, 872, 1088
AcvI CACGTG 1 cut(s) 57
AcyI GRCGYC 2 cut(s) 329, 530
AfaI GTAC 2 cut(s) 221, 230
AfiI CCNNNNNNNGG 3 cut(s) 468, 901, 1285
AflIII ACRYGT 2 cut(s) 56, 1059
AhdI GACNNNNNGTC 1 cut(s) 271
AjiI CACGTC 1 cut(s) 384
AjnI CCWGG 4 cut(s) 61, 461, 584, 1042
Alw21I GWGCWC 4 cut(s) 70, 177, 288, 666
Alw26I GTCTC 1 cut(s) 16
AlwI GGATC 5 cut(s) 329, 342, 372, 912, 1025
AlwNI CAGNNNCTG 1 cut(s) 44
AoxI GGCC 4 cut(s) 405, 459, 594, 880
ApeKI GCWGC 1 cut(s) 41
ApoI RAATTY 5 cut(s) 11, 481, 781, 1121, 1317
Asp700I GAANNNNTTC 1 cut(s) 362
AspLEI GCGC 3 cut(s) 7, 53, 311
AsuHPI GGTGA 3 cut(s) 928, 1040, 1301
AsuII TTCGAA 1 cut(s) 479
BaeGI GKGCMC 1 cut(s) 946
BalI TGGCCA 2 cut(s) 596, 882
BamHI GGATCC 1 cut(s) 334
BanII GRGCYC 4 cut(s) 70, 177, 288, 666
BbrPI CACGTG 1 cut(s) 57
BbsI GAAGAC 1 cut(s) 267
Bbv12I GWGCWC 4 cut(s) 70, 177, 288, 666
BbvCI CCTCAGC 1 cut(s) 912
BbvI GCAGC 1 cut(s) 28
BccI CCATC 3 cut(s) 1126, 1177, 1286
BceAI ACGGC 3 cut(s) 296, 474, 504
BciT130I CCWGG 4 cut(s) 63, 463, 586, 1044
BcoDI GTCTC 1 cut(s) 16
BfaI CTAG 2 cut(s) 161, 167
BfoI RGCGCY 1 cut(s) 54
BfuAI ACCTGC 1 cut(s) 853
BisI GCNGC 2 cut(s) 29, 42
BlpI GCTNAGC 1 cut(s) 393
BlsI GCNGC 2 cut(s) 30, 43
Bme1390I CCNGG 4 cut(s) 63, 463, 586, 1044
BmeRI GACNNNNNGTC 1 cut(s) 271
BmgBI CACGTC 1 cut(s) 384
BmiI GGNNCC 1 cut(s) 336
BmrFI CCNGG 4 cut(s) 63, 463, 586, 1044
BmsI GCATC 1 cut(s) 223
BpiI GAAGAC 1 cut(s) 267
BplI GAGNNNNNCTC 2 cut(s) 1007, 1039
BpmI CTGGAG 2 cut(s) 84, 106
Bpu10I CCTNAGC 1 cut(s) 912
Bpu1102I GCTNAGC 1 cut(s) 393
Bpu14I TTCGAA 1 cut(s) 479
BpuEI CTTGAG 3 cut(s) 272, 650, 1254
BsaAI YACGTR 1 cut(s) 57
BsaBI GATNNNNATC 1 cut(s) 1077
BsaHI GRCGYC 2 cut(s) 329, 530
BsaJI CCNNGG 5 cut(s) 387, 408, 597, 1042, 1116
BsaWI WCCGGW 1 cut(s) 1278
BsaXI ACNNNNNCTCC 2 cut(s) 1273, 1303
Bsc4I CCNNNNNNNGG 3 cut(s) 468, 901, 1285
Bse118I RCCGGY 1 cut(s) 440
Bse1I ACTGG 3 cut(s) 123, 597, 883
Bse8I GATNNNNATC 1 cut(s) 1077
BseBI CCWGG 4 cut(s) 63, 463, 586, 1044
BseDI CCNNGG 5 cut(s) 387, 408, 597, 1042, 1116
BseGI GGATG 2 cut(s) 146, 299
BseJI GATNNNNATC 1 cut(s) 1077
BseLI CCNNNNNNNGG 3 cut(s) 468, 901, 1285
BseMII CTCAG 8 cut(s) 147, 165, 190, 203, 273, 558, 800, 903
BseNI ACTGG 3 cut(s) 123, 597, 883
BseRI GAGGAG 3 cut(s) 60, 63, 232
BseSI GKGCMC 1 cut(s) 946
BseXI GCAGC 1 cut(s) 28
Bsh1236I CGCG 2 cut(s) 217, 309
BshFI GGCC 4 cut(s) 407, 461, 596, 882
BsiHKAI GWGCWC 4 cut(s) 70, 177, 288, 666
BsiSI CCGG 2 cut(s) 441, 1279
BsiWI CGTACG 1 cut(s) 228
BslFI GGGAC 2 cut(s) 484, 538
BslI CCNNNNNNNGG 3 cut(s) 468, 901, 1285
BsmAI GTCTC 1 cut(s) 16
BsmFI GGGAC 2 cut(s) 484, 538
BsmI GAATGC 1 cut(s) 760
BsnI GGCC 4 cut(s) 407, 461, 596, 882
Bsp119I TTCGAA 1 cut(s) 479
Bsp1286I GDGCHC 5 cut(s) 70, 177, 288, 666, 946
Bsp143I GATC 5 cut(s) 334, 377, 430, 904, 1030
Bsp1720I GCTNAGC 1 cut(s) 393
Bsp19I CCATGG 1 cut(s) 597
BspACI CCGC 2 cut(s) 28, 217
BspANI GGCC 4 cut(s) 407, 461, 596, 882
BspCNI CTCAG 8 cut(s) 146, 164, 189, 202, 274, 559, 799, 904
BspFNI CGCG 2 cut(s) 217, 309
BspHI TCATGA 1 cut(s) 1159
BspLI GGNNCC 1 cut(s) 336
BspMI ACCTGC 1 cut(s) 853
BspPI GGATC 5 cut(s) 329, 342, 372, 912, 1025
BspT104I TTCGAA 1 cut(s) 479
BsrFI RCCGGY 1 cut(s) 440
BsrI ACTGG 3 cut(s) 123, 597, 883
BssAI RCCGGY 1 cut(s) 440
BssECI CCNNGG 5 cut(s) 387, 408, 597, 1042, 1116
BssMI GATC 5 cut(s) 334, 377, 430, 904, 1030
BssNI GRCGYC 2 cut(s) 329, 530
BssT1I CCWWGG 3 cut(s) 387, 597, 1116
Bst2UI CCWGG 4 cut(s) 63, 463, 586, 1044
Bst4CI ACNGT 2 cut(s) 224, 965
BstACI GRCGYC 2 cut(s) 329, 530
BstBAI YACGTR 1 cut(s) 57
BstBI TTCGAA 1 cut(s) 479
BstC8I GCNNGC 4 cut(s) 238, 442, 831, 884
BstDSI CCRYGG 2 cut(s) 408, 597
BstENI CCTNNNNNAGG 1 cut(s) 899
BstF5I GGATG 2 cut(s) 146, 299
BstFNI CGCG 2 cut(s) 217, 309
BstH2I RGCGCY 1 cut(s) 54
BstHHI GCGC 3 cut(s) 7, 53, 311
BstKTI GATC 5 cut(s) 337, 380, 433, 907, 1033
BstMAI GTCTC 1 cut(s) 16
BstMBI GATC 5 cut(s) 334, 377, 430, 904, 1030
BstMWI GCNNNNNNNGC 2 cut(s) 50, 214
BstNI CCWGG 4 cut(s) 63, 463, 586, 1044
BstNSI RCATGY 1 cut(s) 1063
BstSCI CCNGG 4 cut(s) 61, 461, 584, 1042
BstSLI GKGCMC 1 cut(s) 946
BstUI CGCG 2 cut(s) 217, 309
BstV1I GCAGC 1 cut(s) 28
BstV2I GAAGAC 1 cut(s) 267
BstX2I RGATCY 2 cut(s) 334, 904
BstXI CCANNNNNNTGG 1 cut(s) 592
BstYI RGATCY 2 cut(s) 334, 904
BsuRI GGCC 4 cut(s) 407, 461, 596, 882
BtgI CCRYGG 2 cut(s) 408, 597
BtgZI GCGATG 1 cut(s) 328
BtrI CACGTC 1 cut(s) 384
BtsCI GGATG 2 cut(s) 146, 299
BtsIMutI CAGTG 4 cut(s) 197, 279, 590, 896
BveI ACCTGC 1 cut(s) 853
Cac8I GCNNGC 4 cut(s) 238, 442, 831, 884
CaiI CAGNNNCTG 1 cut(s) 44
CciI TCATGA 1 cut(s) 1159
CfoI GCGC 3 cut(s) 7, 53, 311
Cfr10I RCCGGY 1 cut(s) 440
CseI GACGC 1 cut(s) 318
Csp6I GTAC 2 cut(s) 220, 229
CviAII CATG 4 cut(s) 367, 598, 1060, 1160
CviQI GTAC 2 cut(s) 220, 229
DpnI GATC 5 cut(s) 336, 379, 432, 906, 1032
DpnII GATC 5 cut(s) 334, 377, 430, 904, 1030
DraI TTTAAA 1 cut(s) 1077
DrdI GACNNNNNNGTC 1 cut(s) 532
DriI GACNNNNNGTC 1 cut(s) 271
DseDI GACNNNNNNGTC 1 cut(s) 532
EaeI YGGCCR 3 cut(s) 459, 594, 880
Eam1105I GACNNNNNGTC 1 cut(s) 271
Ecl136II GAGCTC 4 cut(s) 68, 175, 286, 664
Eco130I CCWWGG 3 cut(s) 387, 597, 1116
Eco24I GRGCYC 4 cut(s) 70, 177, 288, 666
Eco53kI GAGCTC 4 cut(s) 68, 175, 286, 664
Eco57I CTGAAG 3 cut(s) 845, 872, 1088
Eco72I CACGTG 1 cut(s) 57
EcoICRI GAGCTC 4 cut(s) 68, 175, 286, 664
EcoNI CCTNNNNNAGG 1 cut(s) 899
EcoRI GAATTC 1 cut(s) 781
EcoRII CCWGG 4 cut(s) 61, 461, 584, 1042
EcoT14I CCWWGG 3 cut(s) 387, 597, 1116
EcoT38I GRGCYC 4 cut(s) 70, 177, 288, 666
ErhI CCWWGG 3 cut(s) 387, 597, 1116
FaeI CATG 4 cut(s) 370, 601, 1063, 1163
FaqI GGGAC 2 cut(s) 484, 538
FatI CATG 4 cut(s) 366, 597, 1059, 1159
FauNDI CATATG 2 cut(s) 985, 1150
Fnu4HI GCNGC 2 cut(s) 29, 42
FokI GGATG 2 cut(s) 133, 286
FriOI GRGCYC 4 cut(s) 70, 177, 288, 666
Fsp4HI GCNGC 2 cut(s) 29, 42
FspBI CTAG 2 cut(s) 161, 167
GlaI GCGC 3 cut(s) 6, 52, 310
GluI GCNGC 2 cut(s) 29, 42
GsuI CTGGAG 2 cut(s) 84, 106
HaeII RGCGCY 1 cut(s) 54
HaeIII GGCC 4 cut(s) 407, 461, 596, 882
HapII CCGG 2 cut(s) 441, 1279
HgaI GACGC 1 cut(s) 318
HhaI GCGC 3 cut(s) 7, 53, 311
Hin1I GRCGYC 2 cut(s) 329, 530
Hin1II CATG 4 cut(s) 370, 601, 1063, 1163
Hin6I GCGC 3 cut(s) 5, 51, 309
HinP1I GCGC 3 cut(s) 5, 51, 309
HincII GTYRAC 1 cut(s) 564
HindII GTYRAC 1 cut(s) 564
HindIII AAGCTT 1 cut(s) 1165
HinfI GANTC 3 cut(s) 421, 628, 1142
HpaII CCGG 2 cut(s) 441, 1279
HphI GGTGA 3 cut(s) 928, 1040, 1301
Hpy166II GTNNAC 1 cut(s) 564
Hpy188I TCNGA 9 cut(s) 154, 265, 334, 430, 538, 633, 820, 1231, 1249
Hpy188III TCNNGA 6 cut(s) 770, 794, 1052, 1066, 1160, 1221
Hpy8I GTNNAC 1 cut(s) 564
Hpy99I CGWCG 6 cut(s) 217, 256, 317, 334, 532, 535
HpyAV CCTTC 5 cut(s) 219, 703, 913, 1011, 1063
HpyCH4III ACNGT 2 cut(s) 224, 965
HpyCH4IV ACGT 5 cut(s) 56, 383, 530, 946, 955
HpyCH4V TGCA 2 cut(s) 236, 899
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 214
HpySE526I ACGT 5 cut(s) 56, 383, 530, 946, 955
Hsp92I GRCGYC 2 cut(s) 329, 530
Hsp92II CATG 4 cut(s) 370, 601, 1063, 1163
HspAI GCGC 3 cut(s) 5, 51, 309
KroI GCCGGC 1 cut(s) 440
KroNI GCCGGC 1 cut(s) 442
Kzo9I GATC 5 cut(s) 334, 377, 430, 904, 1030
LmnI GCTCC 5 cut(s) 65, 73, 245, 297, 640
Lsp1109I GCAGC 1 cut(s) 28
LweI GCATC 1 cut(s) 223
MaeI CTAG 2 cut(s) 161, 167
MaeII ACGT 5 cut(s) 56, 383, 530, 946, 955
MaeIII GTNAC 1 cut(s) 865
MalI GATC 5 cut(s) 336, 379, 432, 906, 1032
MboI GATC 5 cut(s) 334, 377, 430, 904, 1030
MboII GAAGA 4 cut(s) 267, 692, 746, 845
MflI RGATCY 2 cut(s) 334, 904
MhlI GDGCHC 5 cut(s) 70, 177, 288, 666, 946
MlsI TGGCCA 2 cut(s) 596, 882
MluNI TGGCCA 2 cut(s) 596, 882
MlyI GAGTC 1 cut(s) 1136
MmeI TCCRAC 4 cut(s) 130, 288, 312, 1058
Mox20I TGGCCA 2 cut(s) 596, 882
MreI CGCCGGCG 1 cut(s) 440
MroNI GCCGGC 1 cut(s) 440
MroXI GAANNNNTTC 1 cut(s) 362
MscI TGGCCA 2 cut(s) 596, 882
MseI TTAA 7 cut(s) 402, 485, 605, 671, 749, 1076, 1197
MslI CAYNNNNRTG 1 cut(s) 353
Msp20I TGGCCA 2 cut(s) 596, 882
MspA1I CMGCKG 2 cut(s) 28, 41
MspI CCGG 2 cut(s) 441, 1279
MspR9I CCNGG 4 cut(s) 63, 463, 586, 1044
Mva1269I GAATGC 1 cut(s) 760
MvaI CCWGG 4 cut(s) 63, 463, 586, 1044
MvnI CGCG 2 cut(s) 217, 309
MwoI GCNNNNNNNGC 2 cut(s) 50, 214
NaeI GCCGGC 1 cut(s) 442
NcoI CCATGG 1 cut(s) 597
NdeI CATATG 2 cut(s) 985, 1150
NdeII GATC 5 cut(s) 334, 377, 430, 904, 1030
NgoMIV GCCGGC 1 cut(s) 440
NlaIII CATG 4 cut(s) 370, 601, 1063, 1163
NlaIV GGNNCC 1 cut(s) 336
NmeAIII GCCGAG 1 cut(s) 685
NmuCI GTSAC 1 cut(s) 865
NspI RCATGY 1 cut(s) 1063
NspV TTCGAA 1 cut(s) 479
PagI TCATGA 1 cut(s) 1159
PciI ACATGT 1 cut(s) 1059
PcsI WCGNNNNNNNCGW 1 cut(s) 952
PctI GAATGC 1 cut(s) 760
PdiI GCCGGC 1 cut(s) 442
PdmI GAANNNNTTC 1 cut(s) 362
PfeI GAWTC 2 cut(s) 421, 628
Pfl23II CGTACG 1 cut(s) 228
PflFI GACNNNGTC 2 cut(s) 529, 532
PfoI TCCNGGA 1 cut(s) 61
PkrI GCNGC 2 cut(s) 30, 43
PleI GAGTC 1 cut(s) 1136
PmaCI CACGTG 1 cut(s) 57
PmlI CACGTG 1 cut(s) 57
PpsI GAGTC 1 cut(s) 1136
Ppu21I YACGTR 1 cut(s) 57
PscI ACATGT 1 cut(s) 1059
Psp124BI GAGCTC 4 cut(s) 70, 177, 288, 666
Psp6I CCWGG 4 cut(s) 61, 461, 584, 1042
PspCI CACGTG 1 cut(s) 57
PspGI CCWGG 4 cut(s) 61, 461, 584, 1042
PspLI CGTACG 1 cut(s) 228
PspN4I GGNNCC 1 cut(s) 336
PstNI CAGNNNCTG 1 cut(s) 44
PsuI RGATCY 2 cut(s) 334, 904
PsyI GACNNNGTC 2 cut(s) 529, 532
PvuII CAGCTG 1 cut(s) 41
RsaI GTAC 2 cut(s) 221, 230
RsaNI GTAC 2 cut(s) 220, 229
RseI CAYNNNNRTG 1 cut(s) 353
SacI GAGCTC 4 cut(s) 70, 177, 288, 666
SaqAI TTAA 7 cut(s) 402, 485, 605, 671, 749, 1076, 1197
SatI GCNGC 2 cut(s) 29, 42
Sau3AI GATC 5 cut(s) 334, 377, 430, 904, 1030
SchI GAGTC 1 cut(s) 1136
ScrFI CCNGG 4 cut(s) 63, 463, 586, 1044
SduI GDGCHC 5 cut(s) 70, 177, 288, 666, 946
SfaNI GCATC 1 cut(s) 223
SfuI TTCGAA 1 cut(s) 479
SgrAI CRCCGGYG 1 cut(s) 440
SmiI ATTTAAAT 1 cut(s) 1077
SmiMI CAYNNNNRTG 1 cut(s) 353
SmlI CTYRAG 3 cut(s) 287, 665, 1269
SmoI CTYRAG 3 cut(s) 287, 665, 1269
SsiI CCGC 2 cut(s) 28, 217
SspMI CTAG 2 cut(s) 161, 167
SstI GAGCTC 4 cut(s) 70, 177, 288, 666
StyD4I CCNGG 4 cut(s) 61, 461, 584, 1042
StyI CCWWGG 3 cut(s) 387, 597, 1116
SwaI ATTTAAAT 1 cut(s) 1077
TaaI ACNGT 2 cut(s) 224, 965
TaiI ACGT 5 cut(s) 59, 386, 533, 949, 958
TaqI TCGA 1 cut(s) 479
TauI GCSGC 1 cut(s) 31
TfiI GAWTC 2 cut(s) 421, 628
Tru1I TTAA 7 cut(s) 402, 485, 605, 671, 749, 1076, 1197
Tru9I TTAA 7 cut(s) 402, 485, 605, 671, 749, 1076, 1197
TscAI CASTG 4 cut(s) 197, 286, 597, 896
TseFI GTSAC 1 cut(s) 865
TseI GCWGC 1 cut(s) 41
Tsp45I GTSAC 1 cut(s) 865
TspDTI ATGAA 7 cut(s) 218, 355, 371, 794, 1011, 1176, 1310
TspGWI ACGGA 1 cut(s) 414
TspRI CASTG 4 cut(s) 197, 286, 597, 896
Tth111I GACNNNGTC 2 cut(s) 529, 532
XagI CCTNNNNNAGG 1 cut(s) 899
XapI RAATTY 5 cut(s) 11, 481, 781, 1121, 1317
XceI RCATGY 1 cut(s) 1063
XmnI GAANNNNTTC 1 cut(s) 362
XspI CTAG 2 cut(s) 161, 167
ZraI GACGTC 1 cut(s) 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.