FvH4_3g00551

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0009277
Physical Location & Seq
Forward (+)
286548 .. 289496
2949 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g00551.t3

Sequence Viewer

Length: 1134 bp
ATGAAGCCCTCGTCGCGCTACAGTTCCTACGACGCACGCTCCTCCACCACCTCCAACCCCTCCTCCTCCGCTGAGTTCAAGCCCAAGCACCCCACCTCCTCCGCTTCACGCGCCGTCGTCAAATCCAAGCCCTCGCCGGACCCCAACCTCACCACCATGGTCAGAAAATTCATCGAAAAGCGATCCTCCTCATCCAAGCCCAAGCCGATTAGCGGCACCGCCTTGGTGATCCCGTCCGATGCAATCTCCGACGGCCTGAGAAAGACGGCCAAAAATGGCTCCTCCGGCTCCAACTTCGCGGCGCTGCACAGGAAGCTGTTTGGTAAAGCCACGGAGAGGAAGAAGGAGGTGAAGGCGTTGACCGAGGTCAAAGGGAACACCAGGACGCTGGCCATGGTGTTGAGAAGTGAGAGAGAGCTTCTGAGTCTGAACAAGGATCAAGAATCGGAGATCGCCGACCTCAAGTTGATGATTGAAGAGAAGAACAGAGAAGTGGAAAAATTGAAGGACTTGTGTTTGAAGCAAAGGGAGGAAATCAAATCGTTGAAGAGCACGATTTTGTTCCCGGATGTTATGAATTCTCAGCTCCAAGAGTTGGTAGAGAAGCAAGGGTCAGAGCTTAAGCAAGCCAAACAAGTAATCCCAAATCTTCAAAGGCAGGTCACTTCTCTCACTGGCCAGCTCCAATGCCTTGCAGTGGATCTTGCTGAGGTGAAAGCAGACAAACATTCAGTGAGGGCATGTTTTCAAAGTGATGACAGTATTCCCAGAACTCCAACGTATCATCAGAAAGAATCTTCGAATTCTCTGGAGTTCAGCTCTTGTGATCCAACCAGTCCTGGTAGTCCAGATGACATGTTCCTAAAGGATTTAAATCCATGTTTAACACCCTTCTGTGCTAAATCAAAGTCCAAGGAATTTGATGAGATGGGTTACTACTCTCCACACGGATATGATGAAAGCTTATCTAAAAACAATGTGGACTTTGGATTGAACTCTTGTGCGAGGAAGTTGACCCGAAGTTCAGACTGTTGCCAGAATTCTGAAACAGAAAGCAGAACAGCTCATGCAAATCGGAGATCTGGTGATGCTCAACGAACATATGGCAATCGACCTCACCGTAATTATTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

378

Amino Acids

41.99

Weight (kDa)

9.27

Isoelectric Point (pI)

51.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 649
AccB1I GGYRCC 1 cut(s) 215
AccB7I CCANNNNNTGG 1 cut(s) 595
AccII CGCG 3 cut(s) 16, 111, 299
AciI CCGC 5 cut(s) 69, 102, 213, 219, 299
AclWI GGATC 5 cut(s) 177, 223, 444, 708, 821
AcoI YGGCCR 3 cut(s) 267, 390, 676
AcsI RAATTY 5 cut(s) 167, 577, 802, 917, 1039
AfiI CCNNNNNNNGG 4 cut(s) 212, 336, 595, 697
AflII CTTAAG 1 cut(s) 620
AflIII ACRYGT 1 cut(s) 855
AgsI TTSAA 8 cut(s) 79, 476, 505, 520, 547, 653, 749, 994
AjnI CCWGG 2 cut(s) 380, 838
AluBI AGCT 8 cut(s) 316, 418, 586, 619, 682, 819, 963, 1064
AluI AGCT 8 cut(s) 316, 418, 586, 619, 682, 819, 963, 1064
Alw21I GWGCWC 1 cut(s) 554
AlwI GGATC 5 cut(s) 177, 223, 444, 708, 821
AoxI GGCC 4 cut(s) 253, 267, 390, 676
ApeKI GCWGC 1 cut(s) 304
ApoI RAATTY 5 cut(s) 167, 577, 802, 917, 1039
AspLEI GCGC 3 cut(s) 18, 113, 304
AspS9I GGNCC 1 cut(s) 139
AsuC2I CCSGG 1 cut(s) 566
AsuHPI GGTGA 6 cut(s) 142, 238, 361, 724, 1097, 1109
AsuII TTCGAA 1 cut(s) 800
AvaII GGWCC 1 cut(s) 139
BalI TGGCCA 2 cut(s) 392, 678
BanI GGYRCC 1 cut(s) 215
Bbv12I GWGCWC 1 cut(s) 554
BbvCI CCTCAGC 1 cut(s) 708
BbvI GCAGC 1 cut(s) 291
BccI CCATC 1 cut(s) 922
BceAI ACGGC 3 cut(s) 98, 268, 282
BciT130I CCWGG 2 cut(s) 382, 840
BcnI CCSGG 1 cut(s) 566
BfmI CTRYAG 1 cut(s) 19
BfoI RGCGCY 1 cut(s) 305
BfrI CTTAAG 1 cut(s) 620
BfuAI ACCTGC 1 cut(s) 649
BglII AGATCT 1 cut(s) 1079
BisI GCNGC 3 cut(s) 214, 300, 305
BlsI GCNGC 3 cut(s) 215, 301, 306
Bme1390I CCNGG 3 cut(s) 382, 566, 840
Bme18I GGWCC 1 cut(s) 139
BmgT120I GGNCC 1 cut(s) 139
BmiI GGNNCC 4 cut(s) 141, 217, 280, 289
BmrFI CCNGG 3 cut(s) 382, 566, 840
BmsI GCATC 2 cut(s) 229, 1078
BoxI GACNNNNGTC 1 cut(s) 365
BplI GAGNNNNNCTC 2 cut(s) 803, 835
BpmI CTGGAG 1 cut(s) 830
Bpu10I CCTNAGC 1 cut(s) 708
Bpu14I TTCGAA 1 cut(s) 800
BpuEI CTTGAG 1 cut(s) 446
BpuMI CCSGG 1 cut(s) 566
BsaBI GATNNNNATC 1 cut(s) 873
BsaJI CCNNGG 6 cut(s) 156, 222, 330, 363, 393, 912
BsaXI ACNNNNNCTCC 8 cut(s) 23, 47, 53, 77, 80, 110, 1069, 1099
Bsc4I CCNNNNNNNGG 4 cut(s) 212, 336, 595, 697
Bse1I ACTGG 2 cut(s) 679, 834
Bse8I GATNNNNATC 1 cut(s) 873
BseBI CCWGG 2 cut(s) 382, 840
BseDI CCNNGG 6 cut(s) 156, 222, 330, 363, 393, 912
BseGI GGATG 2 cut(s) 191, 574
BseJI GATNNNNATC 1 cut(s) 873
BseLI CCNNNNNNNGG 4 cut(s) 212, 336, 595, 697
BseMII CTCAG 5 cut(s) 63, 248, 413, 596, 699
BseNI ACTGG 2 cut(s) 679, 834
BseRI GAGGAG 6 cut(s) 31, 52, 55, 88, 178, 271
BseXI GCAGC 1 cut(s) 291
BsgI GTGCAG 1 cut(s) 290
Bsh1236I CGCG 3 cut(s) 16, 111, 299
BshFI GGCC 4 cut(s) 255, 269, 392, 678
BshNI GGYRCC 1 cut(s) 215
BsiHKAI GWGCWC 1 cut(s) 554
BsiSI CCGG 3 cut(s) 137, 285, 566
BslI CCNNNNNNNGG 4 cut(s) 212, 336, 595, 697
BsnI GGCC 4 cut(s) 255, 269, 392, 678
Bsp119I TTCGAA 1 cut(s) 800
Bsp1286I GDGCHC 1 cut(s) 554
Bsp143I GATC 7 cut(s) 182, 228, 436, 450, 700, 826, 1079
Bsp19I CCATGG 2 cut(s) 156, 393
BspACI CCGC 5 cut(s) 69, 102, 213, 219, 299
BspANI GGCC 4 cut(s) 255, 269, 392, 678
BspCNI CTCAG 5 cut(s) 64, 249, 414, 595, 700
BspFNI CGCG 3 cut(s) 16, 111, 299
BspLI GGNNCC 4 cut(s) 141, 217, 280, 289
BspMI ACCTGC 1 cut(s) 649
BspPI GGATC 5 cut(s) 177, 223, 444, 708, 821
BspQI GCTCTTC 1 cut(s) 542
BspT104I TTCGAA 1 cut(s) 800
BspT107I GGYRCC 1 cut(s) 215
BspTI CTTAAG 1 cut(s) 620
BsrI ACTGG 2 cut(s) 679, 834
BssECI CCNNGG 6 cut(s) 156, 222, 330, 363, 393, 912
BssMI GATC 7 cut(s) 182, 228, 436, 450, 700, 826, 1079
BssT1I CCWWGG 4 cut(s) 156, 222, 393, 912
Bst2UI CCWGG 2 cut(s) 382, 840
Bst4CI ACNGT 4 cut(s) 23, 761, 1031, 1121
Bst6I CTCTTC 2 cut(s) 471, 542
BstAFI CTTAAG 1 cut(s) 620
BstBI TTCGAA 1 cut(s) 800
BstC8I GCNNGC 4 cut(s) 37, 390, 627, 680
BstDEI CTNAG 5 cut(s) 72, 257, 422, 582, 708
BstDSI CCRYGG 3 cut(s) 156, 330, 393
BstF5I GGATG 2 cut(s) 191, 574
BstFNI CGCG 3 cut(s) 16, 111, 299
BstH2I RGCGCY 1 cut(s) 305
BstHHI GCGC 3 cut(s) 18, 113, 304
BstKTI GATC 7 cut(s) 185, 231, 439, 453, 703, 829, 1082
BstMBI GATC 7 cut(s) 182, 228, 436, 450, 700, 826, 1079
BstMWI GCNNNNNNNGC 4 cut(s) 13, 110, 285, 313
BstNI CCWGG 2 cut(s) 382, 840
BstNSI RCATGY 2 cut(s) 744, 859
BstPAI GACNNNNGTC 1 cut(s) 365
BstSCI CCNGG 3 cut(s) 380, 564, 838
BstSFI CTRYAG 1 cut(s) 19
BstUI CGCG 3 cut(s) 16, 111, 299
BstV1I GCAGC 1 cut(s) 291
BstX2I RGATCY 2 cut(s) 700, 1079
BstXI CCANNNNNNTGG 1 cut(s) 388
BstYI RGATCY 2 cut(s) 700, 1079
BsuRI GGCC 4 cut(s) 255, 269, 392, 678
BtgI CCRYGG 3 cut(s) 156, 330, 393
BtsCI GGATG 2 cut(s) 191, 574
BtsI GCAGTG 1 cut(s) 702
BtsIMutI CAGTG 3 cut(s) 672, 702, 738
BveI ACCTGC 1 cut(s) 649
Cac8I GCNNGC 4 cut(s) 37, 390, 627, 680
CfoI GCGC 3 cut(s) 18, 113, 304
Cfr13I GGNCC 1 cut(s) 139
CseI GACGC 2 cut(s) 41, 394
CviAII CATG 6 cut(s) 157, 394, 741, 856, 879, 1067
DdeI CTNAG 5 cut(s) 72, 257, 422, 582, 708
DpnI GATC 7 cut(s) 184, 230, 438, 452, 702, 828, 1081
DpnII GATC 7 cut(s) 182, 228, 436, 450, 700, 826, 1079
DraI TTTAAA 1 cut(s) 873
EaeI YGGCCR 3 cut(s) 267, 390, 676
Eam1104I CTCTTC 2 cut(s) 471, 542
EarI CTCTTC 2 cut(s) 471, 542
Eco130I CCWWGG 4 cut(s) 156, 222, 393, 912
Eco47I GGWCC 1 cut(s) 139
EcoRI GAATTC 3 cut(s) 577, 802, 1039
EcoRII CCWGG 2 cut(s) 380, 838
EcoT14I CCWWGG 4 cut(s) 156, 222, 393, 912
ErhI CCWWGG 4 cut(s) 156, 222, 393, 912
FaeI CATG 6 cut(s) 160, 397, 744, 859, 882, 1070
FatI CATG 6 cut(s) 156, 393, 740, 855, 878, 1066
FauNDI CATATG 1 cut(s) 1102
Fnu4HI GCNGC 3 cut(s) 214, 300, 305
FokI GGATG 2 cut(s) 178, 581
Fsp4HI GCNGC 3 cut(s) 214, 300, 305
GlaI GCGC 3 cut(s) 17, 112, 303
GluI GCNGC 3 cut(s) 214, 300, 305
GsuI CTGGAG 1 cut(s) 830
HaeII RGCGCY 1 cut(s) 305
HaeIII GGCC 4 cut(s) 255, 269, 392, 678
HapII CCGG 3 cut(s) 137, 285, 566
HgaI GACGC 2 cut(s) 41, 394
HhaI GCGC 3 cut(s) 18, 113, 304
Hin1II CATG 6 cut(s) 160, 397, 744, 859, 882, 1070
Hin6I GCGC 3 cut(s) 16, 111, 302
HinP1I GCGC 3 cut(s) 16, 111, 302
HincII GTYRAC 2 cut(s) 360, 1014
HindII GTYRAC 2 cut(s) 360, 1014
HindIII AAGCTT 1 cut(s) 961
HinfI GANTC 3 cut(s) 424, 443, 794
HpaII CCGG 3 cut(s) 137, 285, 566
HphI GGTGA 6 cut(s) 142, 238, 361, 724, 1097, 1109
Hpy166II GTNNAC 3 cut(s) 360, 982, 1014
Hpy188III TCNNGA 3 cut(s) 440, 809, 848
Hpy8I GTNNAC 3 cut(s) 360, 982, 1014
Hpy99I CGWCG 4 cut(s) 16, 35, 119, 254
HpyAV CCTTC 4 cut(s) 337, 346, 499, 901
HpyCH4III ACNGT 4 cut(s) 23, 761, 1031, 1121
HpyCH4IV ACGT 1 cut(s) 779
HpyCH4V TGCA 4 cut(s) 242, 307, 695, 1070
HpyF10VI GCNNNNNNNGC 4 cut(s) 13, 110, 285, 313
HpyF3I CTNAG 5 cut(s) 72, 257, 422, 582, 708
HpySE526I ACGT 1 cut(s) 779
Hsp92II CATG 6 cut(s) 160, 397, 744, 859, 882, 1070
HspAI GCGC 3 cut(s) 16, 111, 302
Kzo9I GATC 7 cut(s) 182, 228, 436, 450, 700, 826, 1079
LguI GCTCTTC 1 cut(s) 542
LmnI GCTCC 5 cut(s) 44, 284, 293, 591, 687
Lsp1109I GCAGC 1 cut(s) 291
LweI GCATC 2 cut(s) 229, 1078
MaeII ACGT 1 cut(s) 779
MaeIII GTNAC 2 cut(s) 661, 932
MalI GATC 7 cut(s) 184, 230, 438, 452, 702, 828, 1081
MboI GATC 7 cut(s) 182, 228, 436, 450, 700, 826, 1079
MboII GAAGA 6 cut(s) 352, 488, 493, 559, 641, 789
MflI RGATCY 2 cut(s) 700, 1079
MhlI GDGCHC 1 cut(s) 554
MlsI TGGCCA 2 cut(s) 392, 678
MluCI AATT 7 cut(s) 167, 500, 577, 802, 917, 1039, 1123
MluNI TGGCCA 2 cut(s) 392, 678
MlyI GAGTC 1 cut(s) 433
MmeI TCCRAC 5 cut(s) 78, 273, 315, 800, 854
Mox20I TGGCCA 2 cut(s) 392, 678
MscI TGGCCA 2 cut(s) 392, 678
MseI TTAA 3 cut(s) 621, 872, 884
MslI CAYNNNNRTG 2 cut(s) 155, 951
Msp20I TGGCCA 2 cut(s) 392, 678
MspA1I CMGCKG 1 cut(s) 71
MspCI CTTAAG 1 cut(s) 620
MspI CCGG 3 cut(s) 137, 285, 566
MspR9I CCNGG 3 cut(s) 382, 566, 840
MvaI CCWGG 2 cut(s) 382, 840
MvnI CGCG 3 cut(s) 16, 111, 299
MwoI GCNNNNNNNGC 4 cut(s) 13, 110, 285, 313
NciI CCSGG 1 cut(s) 566
NcoI CCATGG 2 cut(s) 156, 393
NdeI CATATG 1 cut(s) 1102
NdeII GATC 7 cut(s) 182, 228, 436, 450, 700, 826, 1079
NlaIII CATG 6 cut(s) 160, 397, 744, 859, 882, 1070
NlaIV GGNNCC 4 cut(s) 141, 217, 280, 289
NmuCI GTSAC 1 cut(s) 661
NspI RCATGY 2 cut(s) 744, 859
NspV TTCGAA 1 cut(s) 800
PciI ACATGT 1 cut(s) 855
PciSI GCTCTTC 1 cut(s) 542
PcsI WCGNNNNNNNCGW 1 cut(s) 1117
PfeI GAWTC 2 cut(s) 443, 794
PflMI CCANNNNNTGG 1 cut(s) 595
PfoI TCCNGGA 1 cut(s) 564
PkrI GCNGC 3 cut(s) 215, 301, 306
PleI GAGTC 1 cut(s) 432
PpsI GAGTC 1 cut(s) 432
PscI ACATGT 1 cut(s) 855
PshAI GACNNNNGTC 1 cut(s) 365
Psp6I CCWGG 2 cut(s) 380, 838
PspGI CCWGG 2 cut(s) 380, 838
PspN4I GGNNCC 4 cut(s) 141, 217, 280, 289
PspPI GGNCC 1 cut(s) 139
PsuI RGATCY 2 cut(s) 700, 1079
RseI CAYNNNNRTG 2 cut(s) 155, 951
SapI GCTCTTC 1 cut(s) 542
SaqAI TTAA 3 cut(s) 621, 872, 884
SatI GCNGC 3 cut(s) 214, 300, 305
Sau3AI GATC 7 cut(s) 182, 228, 436, 450, 700, 826, 1079
Sau96I GGNCC 1 cut(s) 139
SchI GAGTC 1 cut(s) 433
ScrFI CCNGG 3 cut(s) 382, 566, 840
SduI GDGCHC 1 cut(s) 554
SfaNI GCATC 2 cut(s) 229, 1078
SfcI CTRYAG 1 cut(s) 19
SfuI TTCGAA 1 cut(s) 800
SinI GGWCC 1 cut(s) 139
SmiI ATTTAAAT 1 cut(s) 873
SmiMI CAYNNNNRTG 2 cut(s) 155, 951
SmlI CTYRAG 2 cut(s) 461, 620
SmoI CTYRAG 2 cut(s) 461, 620
Sse9I AATT 7 cut(s) 167, 500, 577, 802, 917, 1039, 1123
SsiI CCGC 5 cut(s) 69, 102, 213, 219, 299
StyD4I CCNGG 3 cut(s) 380, 564, 838
StyI CCWWGG 4 cut(s) 156, 222, 393, 912
SwaI ATTTAAAT 1 cut(s) 873
TaaI ACNGT 4 cut(s) 23, 761, 1031, 1121
TaiI ACGT 1 cut(s) 782
TaqI TCGA 3 cut(s) 174, 800, 1111
TaqII GACCGA 1 cut(s) 377
TasI AATT 7 cut(s) 167, 500, 577, 802, 917, 1039, 1123
TauI GCSGC 2 cut(s) 216, 302
TfiI GAWTC 2 cut(s) 443, 794
Tru1I TTAA 3 cut(s) 621, 872, 884
Tru9I TTAA 3 cut(s) 621, 872, 884
TscAI CASTG 3 cut(s) 679, 702, 738
TseFI GTSAC 1 cut(s) 661
TseI GCWGC 1 cut(s) 304
Tsp45I GTSAC 1 cut(s) 661
TspDTI ATGAA 4 cut(s) 17, 160, 590, 972
TspGWI ACGGA 2 cut(s) 347, 963
TspRI CASTG 3 cut(s) 679, 702, 738
Van91I CCANNNNNTGG 1 cut(s) 595
Vha464I CTTAAG 1 cut(s) 620
VpaK11BI GGWCC 1 cut(s) 139
XapI RAATTY 5 cut(s) 167, 577, 802, 917, 1039
XceI RCATGY 2 cut(s) 744, 859
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.