Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0009277

Physical Location & Seq

Genomic Coordinates Reverse (-)

41304190 .. 41306726

Gene Structure 2537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1336700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGAAGCCCTCGTCGCGATACAACTCGTACGATGCCCGCTCCTCAACCTCCTCGCACTTCTCCGACCCCTCGTCTTCCAGAGAGCTCAAGCACCCCGCTTCCTCACGCGCCGTCGTCAACTCCAAGCCCTCGGATCCCAACATCTCCACGATGGTGAAAAAGTTCTTGGAAAAGCGGTCGACTTCCAAGCCCAAGCCGATTAACCCGACGGGATTGGTTATTCCGTCGGATCTGATCGCCGGCGGGTTGAAGAAGCCGGCTAAAAACGGGTCGGGTTCGAATTTCGCGGCGCTTGGTAGGAAGCTGTTTGGAAAAGAAGCGGGAACGGCGTCGTCGGATAAGAAGAAGGAGGTGAAGGCCTTGACTGAGGTCAAAGGGAACACCAGGACGCTGGCTATGGTGTTGAGGAGTGAGAGAGAGCTCTTGAATTCGAATAAGGAGCAGGAAGTTGAAATTACCGAACTTAAATTAATGATTCAAGAAAAGAACAGAGAAGTGGATAAACTGAAGGATTTGTGTTTGAAGCAAAGGGAAGAAATCAAATCATTGAAGAGCGCGATTTTGTTCCCGGATGTTATGAATTCTCAGCTTCAAGAGCTGTTGAAGAAGCAGGGGTCAGAGCTGAAGCAAGCAAAACAAGTTATCCCAAATCTTCAGAGGCAGGTCACTTCTCTTACTGGTCAGCTTCAGTGCCTTGCAGAGGATCTTGCTGAGGTGAAGGCTGATAAAGGTTCAGTTAGGGCGTGTTTTCAACGTGGTGACACTTCTCCAAGAACCCCCACATATGATGACAAAGAATTCTCTAATTCTCTTGAGTTCAGCTCTGGTGATCTGGCCAGCCCTGGTAGTCCAGATGACATGTTCCTGAAGGATTTAAATCCTTGCTTGACCCCATATGCAAAAACAAAGTCCAAGGAATTTGACGAGATGGGCTATGACTCTCCATATCGACATGATGAATGCTTATCCGAAAACAATATGGAGTTTGGATTTAACTCTTGTTCCAGGAAGTTGTCCAAAAGTTCTGATTGTTGCCAGAAGTCCGAAACAGAAAGCAGATTAGCTCAAGGAAATCGGAGATCGGGTGATGCCAAACGAACTTATGGAAAACAAATTCATCGTAAATTTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

378

Amino Acids

41.97

Weight (kDa)

9.32

Isoelectric Point (pI)

47.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17240 AT4G17240
fragaria_vesca	FvH4_3g00551 FvH4_3g00551 FvH4_3g00551 FvH4_3g00551
malus_domestica	MD00G1058000.v1.1 MD10G1336700.v1.1
prunus_persica	Prupe.4G006700_v2.0.a1
pyrus_communis	pycom05g32610 pycom10g28620
rosa_chinensis	RchiOBHm_Chr5g0000761
rosa_laevigata	RLG00000030893
rosa_multiflora	Rmu_sc0000255.1_g000006 Rmu_sc0011992.1_g000004
rosa_roxburghii	Rroxscaffold_1G00075470
rosa_rugosa	Rorug04G0386200
rosa_samantha	Rh5AG006300 Rh5BG008100 Rh5CG006800 Rh5DG006800
rosa_wichuraiana	Rw5G000640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	652
AccBSI	CCGCTC	1 cut(s)	39
AccI	GTMKAC	1 cut(s)	179
AccII	CGCG	4 cut(s)	16, 108, 287, 557
AciI	CCGC	6 cut(s)	37, 96, 175, 243, 287, 320
AclWI	GGATC	4 cut(s)	128, 141, 237, 711
AcoI	YGGCCR	1 cut(s)	834
AcsI	RAATTY	7 cut(s)	280, 427, 580, 797, 917, 1113, 1124
AcuI	CTGAAG	5 cut(s)	527, 638, 644, 671, 887
AcyI	GRCGYC	1 cut(s)	329
AfaI	GTAC	1 cut(s)	29
AfiI	CCNNNNNNNGG	1 cut(s)	700
AflIII	ACRYGT	1 cut(s)	858
AgsI	TTSAA	9 cut(s)	250, 427, 452, 479, 523, 550, 593, 604, 752
AhdI	GACNNNNNGTC	1 cut(s)	70
AjnI	CCWGG	3 cut(s)	383, 841, 1004
AjuI	GAANNNNNNNTTGG	2 cut(s)	149, 181
AleI	CACNNNNGTG	1 cut(s)	152
AluBI	AGCT	9 cut(s)	85, 304, 421, 589, 598, 622, 685, 822, 1064
AluI	AGCT	9 cut(s)	85, 304, 421, 589, 598, 622, 685, 822, 1064
Alw21I	GWGCWC	2 cut(s)	87, 423
AlwI	GGATC	4 cut(s)	128, 141, 237, 711
AoxI	GGCC	2 cut(s)	357, 834
ApoI	RAATTY	7 cut(s)	280, 427, 580, 797, 917, 1113, 1124
ArsI	GACNNNNNNTTYG	2 cut(s)	893, 925
AseI	ATTAAT	1 cut(s)	470
Asp700I	GAANNNNTTC	1 cut(s)	161
AspLEI	GCGC	3 cut(s)	110, 292, 557
AsuC2I	CCSGG	1 cut(s)	569
AsuHPI	GGTGA	6 cut(s)	166, 364, 727, 770, 839, 1097
AsuII	TTCGAA	2 cut(s)	278, 431
BalI	TGGCCA	1 cut(s)	836
BamHI	GGATCC	1 cut(s)	133
BanII	GRGCYC	2 cut(s)	87, 423
BbsI	GAAGAC	1 cut(s)	66
Bbv12I	GWGCWC	2 cut(s)	87, 423
BbvCI	CCTCAGC	1 cut(s)	711
BccI	CCATC	2 cut(s)	145, 922
BceAI	ACGGC	2 cut(s)	95, 342
BciT130I	CCWGG	3 cut(s)	385, 843, 1006
BcnI	CCSGG	1 cut(s)	569
BfaI	CTAG	1 cut(s)	1132
BfoI	RGCGCY	1 cut(s)	293
BfuAI	ACCTGC	1 cut(s)	652
BisI	GCNGC	1 cut(s)	288
BlsI	GCNGC	1 cut(s)	289
Bme1390I	CCNGG	4 cut(s)	385, 569, 843, 1006
BmeRI	GACNNNNNGTC	1 cut(s)	70
BmiI	GGNNCC	1 cut(s)	135
BmrFI	CCNGG	4 cut(s)	385, 569, 843, 1006
BmsI	GCATC	2 cut(s)	22, 1078
BoxI	GACNNNNGTC	1 cut(s)	368
BpiI	GAAGAC	1 cut(s)	66
BplI	GAGNNNNNCTC	2 cut(s)	806, 838
Bpu10I	CCTNAGC	1 cut(s)	711
Bpu14I	TTCGAA	2 cut(s)	278, 431
BpuEI	CTTGAG	3 cut(s)	71, 833, 1050
BpuMI	CCSGG	1 cut(s)	569
BsaBI	GATNNNNATC	1 cut(s)	876
BsaHI	GRCGYC	1 cut(s)	329
BsaJI	CCNNGG	3 cut(s)	129, 841, 912
BsaXI	ACNNNNNCTCC	2 cut(s)	1069, 1099
Bsc4I	CCNNNNNNNGG	1 cut(s)	700
Bse118I	RCCGGY	2 cut(s)	239, 256
Bse1I	ACTGG	1 cut(s)	682
Bse8I	GATNNNNATC	1 cut(s)	876
BseBI	CCWGG	3 cut(s)	385, 843, 1006
BseDI	CCNNGG	3 cut(s)	129, 841, 912
BseGI	GGATG	1 cut(s)	577
BseJI	GATNNNNATC	1 cut(s)	876
BseLI	CCNNNNNNNGG	1 cut(s)	700
BseMII	CTCAG	3 cut(s)	357, 599, 702
BseNI	ACTGG	1 cut(s)	682
BseRI	GAGGAG	3 cut(s)	31, 40, 421
Bsh1236I	CGCG	4 cut(s)	16, 108, 287, 557
Bsh1285I	CGRYCG	1 cut(s)	179
BshFI	GGCC	2 cut(s)	359, 836
BsiEI	CGRYCG	1 cut(s)	179
BsiHKAI	GWGCWC	2 cut(s)	87, 423
BsiSI	CCGG	3 cut(s)	240, 257, 569
BsiWI	CGTACG	1 cut(s)	27
BslI	CCNNNNNNNGG	1 cut(s)	700
BsmI	GAATGC	1 cut(s)	965
BsnI	GGCC	2 cut(s)	359, 836
Bsp119I	TTCGAA	2 cut(s)	278, 431
Bsp1286I	GDGCHC	2 cut(s)	87, 423
Bsp143I	GATC	6 cut(s)	133, 229, 234, 703, 829, 1079
Bsp68I	TCGCGA	1 cut(s)	16
BspACI	CCGC	6 cut(s)	37, 96, 175, 243, 287, 320
BspANI	GGCC	2 cut(s)	359, 836
BspCNI	CTCAG	3 cut(s)	358, 598, 703
BspFNI	CGCG	4 cut(s)	16, 108, 287, 557
BspLI	GGNNCC	1 cut(s)	135
BspMI	ACCTGC	1 cut(s)	652
BspPI	GGATC	4 cut(s)	128, 141, 237, 711
BspQI	GCTCTTC	1 cut(s)	545
BspT104I	TTCGAA	2 cut(s)	278, 431
BsrBI	CCGCTC	1 cut(s)	39
BsrFI	RCCGGY	2 cut(s)	239, 256
BsrI	ACTGG	1 cut(s)	682
BssAI	RCCGGY	2 cut(s)	239, 256
BssECI	CCNNGG	3 cut(s)	129, 841, 912
BssMI	GATC	6 cut(s)	133, 229, 234, 703, 829, 1079
BssNI	GRCGYC	1 cut(s)	329
BssT1I	CCWWGG	1 cut(s)	912
Bst2UI	CCWGG	3 cut(s)	385, 843, 1006
Bst6I	CTCTTC	1 cut(s)	545
BstACI	GRCGYC	1 cut(s)	329
BstBI	TTCGAA	2 cut(s)	278, 431
BstC8I	GCNNGC	6 cut(s)	37, 241, 258, 393, 630, 838
BstDEI	CTNAG	3 cut(s)	366, 585, 711
BstENI	CCTNNNNNAGG	1 cut(s)	698
BstF5I	GGATG	1 cut(s)	577
BstFNI	CGCG	4 cut(s)	16, 108, 287, 557
BstH2I	RGCGCY	1 cut(s)	293
BstHHI	GCGC	3 cut(s)	110, 292, 557
BstKTI	GATC	6 cut(s)	136, 232, 237, 706, 832, 1082
BstMBI	GATC	6 cut(s)	133, 229, 234, 703, 829, 1079
BstMCI	CGRYCG	1 cut(s)	179
BstMWI	GCNNNNNNNGC	3 cut(s)	13, 326, 595
BstNI	CCWGG	3 cut(s)	385, 843, 1006
BstNSI	RCATGY	1 cut(s)	862
BstPAI	GACNNNNGTC	1 cut(s)	368
BstSCI	CCNGG	4 cut(s)	383, 567, 841, 1004
BstUI	CGCG	4 cut(s)	16, 108, 287, 557
BstV2I	GAAGAC	1 cut(s)	66
BstX2I	RGATCY	3 cut(s)	133, 229, 703
BstXI	CCANNNNNNTGG	1 cut(s)	391
BstYI	RGATCY	3 cut(s)	133, 229, 703
BsuRI	GGCC	2 cut(s)	359, 836
BtsCI	GGATG	1 cut(s)	577
BtsIMutI	CAGTG	1 cut(s)	695
BtuMI	TCGCGA	1 cut(s)	16
BveI	ACCTGC	1 cut(s)	652
Cac8I	GCNNGC	6 cut(s)	37, 241, 258, 393, 630, 838
CfoI	GCGC	3 cut(s)	110, 292, 557
Cfr10I	RCCGGY	2 cut(s)	239, 256
CseI	GACGC	2 cut(s)	318, 397
Csp6I	GTAC	1 cut(s)	28
CviAII	CATG	2 cut(s)	859, 953
CviQI	GTAC	1 cut(s)	28
DdeI	CTNAG	3 cut(s)	366, 585, 711
DpnI	GATC	6 cut(s)	135, 231, 236, 705, 831, 1081
DpnII	GATC	6 cut(s)	133, 229, 234, 703, 829, 1079
DraI	TTTAAA	1 cut(s)	876
DriI	GACNNNNNGTC	1 cut(s)	70
EaeI	YGGCCR	1 cut(s)	834
Eam1104I	CTCTTC	1 cut(s)	545
Eam1105I	GACNNNNNGTC	1 cut(s)	70
EarI	CTCTTC	1 cut(s)	545
Ecl136II	GAGCTC	2 cut(s)	85, 421
Eco130I	CCWWGG	1 cut(s)	912
Eco147I	AGGCCT	1 cut(s)	359
Eco24I	GRGCYC	2 cut(s)	87, 423
Eco53kI	GAGCTC	2 cut(s)	85, 421
Eco57I	CTGAAG	5 cut(s)	527, 638, 644, 671, 887
EcoICRI	GAGCTC	2 cut(s)	85, 421
EcoNI	CCTNNNNNAGG	1 cut(s)	698
EcoRI	GAATTC	3 cut(s)	427, 580, 797
EcoRII	CCWGG	3 cut(s)	383, 841, 1004
EcoT14I	CCWWGG	1 cut(s)	912
EcoT38I	GRGCYC	2 cut(s)	87, 423
ErhI	CCWWGG	1 cut(s)	912
FaeI	CATG	2 cut(s)	862, 956
FatI	CATG	2 cut(s)	858, 952
FauI	CCCGC	4 cut(s)	44, 103, 236, 313
FauNDI	CATATG	2 cut(s)	784, 895
FblI	GTMKAC	1 cut(s)	179
Fnu4HI	GCNGC	1 cut(s)	288
FokI	GGATG	1 cut(s)	584
FriOI	GRGCYC	2 cut(s)	87, 423
Fsp4HI	GCNGC	1 cut(s)	288
FspBI	CTAG	1 cut(s)	1132
GlaI	GCGC	3 cut(s)	109, 291, 556
GluI	GCNGC	1 cut(s)	288
HaeII	RGCGCY	1 cut(s)	293
HaeIII	GGCC	2 cut(s)	359, 836
HapII	CCGG	3 cut(s)	240, 257, 569
HgaI	GACGC	2 cut(s)	318, 397
HhaI	GCGC	3 cut(s)	110, 292, 557
Hin1I	GRCGYC	1 cut(s)	329
Hin1II	CATG	2 cut(s)	862, 956
Hin6I	GCGC	3 cut(s)	108, 290, 555
HinP1I	GCGC	3 cut(s)	108, 290, 555
HincII	GTYRAC	2 cut(s)	118, 180
HindII	GTYRAC	2 cut(s)	118, 180
HinfI	GANTC	2 cut(s)	475, 938
HpaII	CCGG	3 cut(s)	240, 257, 569
HphI	GGTGA	6 cut(s)	166, 364, 727, 770, 839, 1097
Hpy166II	GTNNAC	2 cut(s)	118, 180
Hpy188III	TCNNGA	8 cut(s)	15, 78, 424, 479, 593, 812, 851, 865
Hpy8I	GTNNAC	2 cut(s)	118, 180
Hpy99I	CGWCG	6 cut(s)	16, 116, 211, 229, 334, 337
HpyAV	CCTTC	5 cut(s)	340, 349, 502, 712, 862
HpyCH4IV	ACGT	1 cut(s)	754
HpyCH4V	TGCA	2 cut(s)	698, 899
HpyF10VI	GCNNNNNNNGC	3 cut(s)	13, 326, 595
HpyF3I	CTNAG	3 cut(s)	366, 585, 711
HpySE526I	ACGT	1 cut(s)	754
Hsp92I	GRCGYC	1 cut(s)	329
Hsp92II	CATG	2 cut(s)	862, 956
HspAI	GCGC	3 cut(s)	108, 290, 555
KroI	GCCGGC	2 cut(s)	239, 256
KroNI	GCCGGC	2 cut(s)	241, 258
Kzo9I	GATC	6 cut(s)	133, 229, 234, 703, 829, 1079
LguI	GCTCTTC	1 cut(s)	545
LmnI	GCTCC	2 cut(s)	44, 439
LweI	GCATC	2 cut(s)	22, 1078
MaeI	CTAG	1 cut(s)	1132
MaeII	ACGT	1 cut(s)	754
MaeIII	GTNAC	2 cut(s)	664, 758
MalI	GATC	6 cut(s)	135, 231, 236, 705, 831, 1081
MbiI	CCGCTC	1 cut(s)	39
MboI	GATC	6 cut(s)	133, 229, 234, 703, 829, 1079
MboII	GAAGA	7 cut(s)	66, 262, 355, 545, 562, 616, 644
MflI	RGATCY	3 cut(s)	133, 229, 703
MhlI	GDGCHC	2 cut(s)	87, 423
MlsI	TGGCCA	1 cut(s)	836
MluNI	TGGCCA	1 cut(s)	836
MlyI	GAGTC	1 cut(s)	932
MmeI	TCCRAC	3 cut(s)	87, 207, 315
Mox20I	TGGCCA	1 cut(s)	836
MreI	CGCCGGCG	1 cut(s)	239
MroNI	GCCGGC	2 cut(s)	239, 256
MroXI	GAANNNNTTC	1 cut(s)	161
MscI	TGGCCA	1 cut(s)	836
MseI	TTAA	5 cut(s)	201, 465, 470, 875, 993
MslI	CAYNNNNRTG	1 cut(s)	152
Msp20I	TGGCCA	1 cut(s)	836
MspI	CCGG	3 cut(s)	240, 257, 569
MspR9I	CCNGG	4 cut(s)	385, 569, 843, 1006
Mva1269I	GAATGC	1 cut(s)	965
MvaI	CCWGG	3 cut(s)	385, 843, 1006
MvnI	CGCG	4 cut(s)	16, 108, 287, 557
MwoI	GCNNNNNNNGC	3 cut(s)	13, 326, 595
NaeI	GCCGGC	2 cut(s)	241, 258
NciI	CCSGG	1 cut(s)	569
NdeI	CATATG	2 cut(s)	784, 895
NdeII	GATC	6 cut(s)	133, 229, 234, 703, 829, 1079
NgoMIV	GCCGGC	2 cut(s)	239, 256
NlaIII	CATG	2 cut(s)	862, 956
NlaIV	GGNNCC	1 cut(s)	135
NmuCI	GTSAC	2 cut(s)	664, 758
NruI	TCGCGA	1 cut(s)	16
NspI	RCATGY	1 cut(s)	862
NspV	TTCGAA	2 cut(s)	278, 431
OliI	CACNNNNGTG	1 cut(s)	152
PceI	AGGCCT	1 cut(s)	359
PciI	ACATGT	1 cut(s)	858
PciSI	GCTCTTC	1 cut(s)	545
PctI	GAATGC	1 cut(s)	965
PdiI	GCCGGC	2 cut(s)	241, 258
PdmI	GAANNNNTTC	1 cut(s)	161
PfeI	GAWTC	1 cut(s)	475
Pfl23II	CGTACG	1 cut(s)	27
PfoI	TCCNGGA	2 cut(s)	567, 1004
PkrI	GCNGC	1 cut(s)	289
PleI	GAGTC	1 cut(s)	932
PpsI	GAGTC	1 cut(s)	932
PscI	ACATGT	1 cut(s)	858
PshAI	GACNNNNGTC	1 cut(s)	368
PshBI	ATTAAT	1 cut(s)	470
Psp124BI	GAGCTC	2 cut(s)	87, 423
Psp6I	CCWGG	3 cut(s)	383, 841, 1004
PspGI	CCWGG	3 cut(s)	383, 841, 1004
PspLI	CGTACG	1 cut(s)	27
PspN4I	GGNNCC	1 cut(s)	135
PsuI	RGATCY	3 cut(s)	133, 229, 703
RruI	TCGCGA	1 cut(s)	16
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
RseI	CAYNNNNRTG	1 cut(s)	152
SacI	GAGCTC	2 cut(s)	87, 423
SalI	GTCGAC	1 cut(s)	178
SapI	GCTCTTC	1 cut(s)	545
SaqAI	TTAA	5 cut(s)	201, 465, 470, 875, 993
SatI	GCNGC	1 cut(s)	288
Sau3AI	GATC	6 cut(s)	133, 229, 234, 703, 829, 1079
SchI	GAGTC	1 cut(s)	932
ScrFI	CCNGG	4 cut(s)	385, 569, 843, 1006
SduI	GDGCHC	2 cut(s)	87, 423
SfaNI	GCATC	2 cut(s)	22, 1078
SfuI	TTCGAA	2 cut(s)	278, 431
SgrAI	CRCCGGYG	1 cut(s)	239
SmiI	ATTTAAAT	1 cut(s)	876
SmiMI	CAYNNNNRTG	1 cut(s)	152
SmlI	CTYRAG	3 cut(s)	86, 812, 1065
SmoI	CTYRAG	3 cut(s)	86, 812, 1065
SseBI	AGGCCT	1 cut(s)	359
SsiI	CCGC	6 cut(s)	37, 96, 175, 243, 287, 320
SspMI	CTAG	1 cut(s)	1132
SstI	GAGCTC	2 cut(s)	87, 423
StuI	AGGCCT	1 cut(s)	359
StyD4I	CCNGG	4 cut(s)	383, 567, 841, 1004
StyI	CCWWGG	1 cut(s)	912
SwaI	ATTTAAAT	1 cut(s)	876
TaiI	ACGT	1 cut(s)	757
TaqI	TCGA	4 cut(s)	179, 278, 431, 949
TauI	GCSGC	1 cut(s)	290
TfiI	GAWTC	1 cut(s)	475
Tru1I	TTAA	5 cut(s)	201, 465, 470, 875, 993
Tru9I	TTAA	5 cut(s)	201, 465, 470, 875, 993
TscAI	CASTG	1 cut(s)	695
TseFI	GTSAC	2 cut(s)	664, 758
Tsp45I	GTSAC	2 cut(s)	664, 758
TspDTI	ATGAA	4 cut(s)	17, 593, 972, 1106
TspGWI	ACGGA	1 cut(s)	213
TspRI	CASTG	1 cut(s)	695
VspI	ATTAAT	1 cut(s)	470
XagI	CCTNNNNNAGG	1 cut(s)	698
XapI	RAATTY	7 cut(s)	280, 427, 580, 797, 917, 1113, 1124
XceI	RCATGY	1 cut(s)	862
XmiI	GTMKAC	1 cut(s)	179
XmnI	GAANNNNTTC	1 cut(s)	161
XspI	CTAG	1 cut(s)	1132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.