Rmu_sc0011992.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011992.1
OG0009277
Physical Location & Seq
Reverse (-)
9197 .. 11075
1879 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011992.1_g000004.1.cds

Sequence Viewer

Length: 1143 bp
atgaagccctcgtcgcgctacagctcctacgatgcacgctcctccaccgcgtcccaccactcctacccgtcctcctctgccgaattcaagcccaagcaccccgccacgtcctcctcacgcgccgtcgtcaaatccaagccctccccggatcccaacctcaccaccctggtgaaaaagttcatggaaaagcgctcctcctcctccaagcccaagccgattaagggcaccgccttggtgattccgtccgatgtgatcgccgacgacctgaaaaagacggcaaaaaatggctccaacttcgcggcgctgcacaggaagctcttcgggaaagccacgggatcggcggacaagaagaaggaggtcaaggcgttgaccgaggtcaaagggaacaccaggacgttggccatggtgttgagaagcgagagagagcttctcagtctgaataaggaccaagaatcggacatcgccgagctcaggttgatgctcgaagagaagaacaaagaagtggacaaattgaaggacttgtgtttgaagcaaagggaggaaatcaaatcgttgaagagcacgattttgttcccggatgttatgaattctcagcttcaagagttgctagagaagcaagggtcggagctgaagcaagccaaacaagtaatcccaaatcttcaaaggcaggtcacttctctcactggccagctccaatgcctcgcagtggatcttgctgaggtgaaagcagacaaacattcggttagggcatgttttcaaagtgatgacagtattcccagaactccaacgtatcataagaaagaatctttgaattctctggagttcagctcttgtgatccaaccagccctggtagtccagatgacatgttcctaaaggatttaaatccatgcttaacacctttctgtgctaaatcaaagtccaaggaatttgatgagatgggttactactctccacatggctatgatgaaagcttatctaaaaacaacgtggagtttggatttaactcttgtgcgaggaagttgacccgaagttctgactgctgccaaaattctgaaacagaaagtagaacagctcatgcaaatcggagatctggtgatgcccaacgaacatatggcaatcgaactcaccgtaattatttttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

380

Amino Acids

42.44

Weight (kDa)

9.28

Isoelectric Point (pI)

47.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 658
AccB1I GGYRCC 1 cut(s) 224
AccII CGCG 4 cut(s) 16, 50, 120, 299
AciI CCGC 5 cut(s) 48, 102, 228, 299, 341
AclWI GGATC 5 cut(s) 143, 156, 343, 717, 830
AcoI YGGCCR 2 cut(s) 399, 685
AcsI RAATTY 5 cut(s) 83, 586, 811, 926, 1048
AcuI CTGAAG 1 cut(s) 650
AfeI AGCGCT 1 cut(s) 191
AfiI CCNNNNNNNGG 4 cut(s) 221, 454, 471, 706
AflIII ACRYGT 1 cut(s) 864
AgsI TTSAA 8 cut(s) 88, 514, 529, 556, 599, 662, 758, 811
AjiI CACGTC 1 cut(s) 108
AjnI CCWGG 3 cut(s) 165, 389, 847
AleI CACNNNNGTG 1 cut(s) 167
Alw21I GWGCWC 2 cut(s) 471, 563
AlwI GGATC 5 cut(s) 143, 156, 343, 717, 830
Aor51HI AGCGCT 1 cut(s) 191
AoxI GGCC 2 cut(s) 399, 685
ApeKI GCWGC 2 cut(s) 304, 1041
ApoI RAATTY 5 cut(s) 83, 586, 811, 926, 1048
Asp700I GAANNNNTTC 2 cut(s) 176, 317
AspLEI GCGC 4 cut(s) 18, 122, 192, 304
AspS9I GGNCC 1 cut(s) 445
AsuC2I CCSGG 2 cut(s) 146, 575
AsuHPI GGTGA 6 cut(s) 151, 181, 247, 733, 1106, 1118
AvaII GGWCC 1 cut(s) 445
BaeGI GKGCMC 1 cut(s) 227
BalI TGGCCA 2 cut(s) 401, 687
BamHI GGATCC 1 cut(s) 148
BanI GGYRCC 1 cut(s) 224
BanII GRGCYC 1 cut(s) 471
Bbv12I GWGCWC 2 cut(s) 471, 563
BbvCI CCTCAGC 1 cut(s) 717
BbvI GCAGC 2 cut(s) 291, 1028
BccI CCATC 1 cut(s) 931
BceAI ACGGC 2 cut(s) 107, 291
BciT130I CCWGG 3 cut(s) 167, 391, 849
BcnI CCSGG 2 cut(s) 146, 575
BfaI CTAG 1 cut(s) 608
BfmI CTRYAG 1 cut(s) 19
BfoI RGCGCY 2 cut(s) 193, 305
BfuAI ACCTGC 1 cut(s) 658
BglII AGATCT 1 cut(s) 1088
BisI GCNGC 3 cut(s) 300, 305, 1042
BlsI GCNGC 3 cut(s) 301, 306, 1043
Bme1390I CCNGG 5 cut(s) 146, 167, 391, 575, 849
Bme18I GGWCC 1 cut(s) 445
BmgBI CACGTC 1 cut(s) 108
BmgT120I GGNCC 1 cut(s) 445
BmiI GGNNCC 3 cut(s) 150, 226, 289
BmrFI CCNGG 5 cut(s) 146, 167, 391, 575, 849
BmsI GCATC 3 cut(s) 22, 468, 1087
BoxI GACNNNNGTC 1 cut(s) 374
BplI GAGNNNNNCTC 4 cut(s) 414, 446, 812, 844
BpmI CTGGAG 1 cut(s) 839
Bpu10I CCTNAGC 2 cut(s) 470, 717
BpuMI CCSGG 2 cut(s) 146, 575
BsaBI GATNNNNATC 1 cut(s) 882
BsaJI CCNNGG 8 cut(s) 144, 165, 231, 330, 372, 402, 847, 921
BsaXI ACNNNNNCTCC 4 cut(s) 56, 86, 1078, 1108
Bsc4I CCNNNNNNNGG 4 cut(s) 221, 454, 471, 706
Bse1I ACTGG 1 cut(s) 688
Bse8I GATNNNNATC 1 cut(s) 882
BseBI CCWGG 3 cut(s) 167, 391, 849
BseDI CCNNGG 8 cut(s) 144, 165, 231, 330, 372, 402, 847, 921
BseGI GGATG 1 cut(s) 583
BseJI GATNNNNATC 1 cut(s) 882
BseLI CCNNNNNNNGG 4 cut(s) 221, 454, 471, 706
BseMII CTCAG 4 cut(s) 445, 484, 605, 708
BseNI ACTGG 1 cut(s) 688
BseRI GAGGAG 6 cut(s) 31, 64, 103, 184, 187, 190
BseSI GKGCMC 1 cut(s) 227
BseXI GCAGC 2 cut(s) 291, 1028
BsgI GTGCAG 1 cut(s) 290
Bsh1236I CGCG 4 cut(s) 16, 50, 120, 299
BshFI GGCC 2 cut(s) 401, 687
BshNI GGYRCC 1 cut(s) 224
BsiHKAI GWGCWC 2 cut(s) 471, 563
BsiSI CCGG 2 cut(s) 146, 575
BslFI GGGAC 1 cut(s) 37
BslI CCNNNNNNNGG 4 cut(s) 221, 454, 471, 706
BsmFI GGGAC 1 cut(s) 37
BsnI GGCC 2 cut(s) 401, 687
Bsp1286I GDGCHC 3 cut(s) 227, 471, 563
Bsp143I GATC 6 cut(s) 148, 252, 335, 709, 835, 1088
Bsp19I CCATGG 1 cut(s) 402
BspACI CCGC 5 cut(s) 48, 102, 228, 299, 341
BspANI GGCC 2 cut(s) 401, 687
BspCNI CTCAG 4 cut(s) 444, 483, 604, 709
BspFNI CGCG 4 cut(s) 16, 50, 120, 299
BspLI GGNNCC 3 cut(s) 150, 226, 289
BspMI ACCTGC 1 cut(s) 658
BspPI GGATC 5 cut(s) 143, 156, 343, 717, 830
BspQI GCTCTTC 2 cut(s) 323, 551
BspT107I GGYRCC 1 cut(s) 224
BsrI ACTGG 1 cut(s) 688
BssECI CCNNGG 8 cut(s) 144, 165, 231, 330, 372, 402, 847, 921
BssMI GATC 6 cut(s) 148, 252, 335, 709, 835, 1088
BssT1I CCWWGG 3 cut(s) 231, 402, 921
Bst2UI CCWGG 3 cut(s) 167, 391, 849
Bst4CI ACNGT 2 cut(s) 770, 1130
Bst6I CTCTTC 3 cut(s) 323, 480, 551
BstC8I GCNNGC 3 cut(s) 37, 636, 689
BstDEI CTNAG 4 cut(s) 431, 470, 591, 717
BstDSI CCRYGG 2 cut(s) 330, 402
BstF5I GGATG 1 cut(s) 583
BstFNI CGCG 4 cut(s) 16, 50, 120, 299
BstH2I RGCGCY 2 cut(s) 193, 305
BstHHI GCGC 4 cut(s) 18, 122, 192, 304
BstKTI GATC 6 cut(s) 151, 255, 338, 712, 838, 1091
BstMBI GATC 6 cut(s) 148, 252, 335, 709, 835, 1088
BstMWI GCNNNNNNNGC 3 cut(s) 13, 313, 613
BstNI CCWGG 3 cut(s) 167, 391, 849
BstNSI RCATGY 2 cut(s) 753, 868
BstPAI GACNNNNGTC 1 cut(s) 374
BstSCI CCNGG 5 cut(s) 144, 165, 389, 573, 847
BstSFI CTRYAG 1 cut(s) 19
BstSLI GKGCMC 1 cut(s) 227
BstUI CGCG 4 cut(s) 16, 50, 120, 299
BstV1I GCAGC 2 cut(s) 291, 1028
BstX2I RGATCY 3 cut(s) 148, 709, 1088
BstXI CCANNNNNNTGG 1 cut(s) 397
BstYI RGATCY 3 cut(s) 148, 709, 1088
BsuRI GGCC 2 cut(s) 401, 687
BtgI CCRYGG 2 cut(s) 330, 402
BtgZI GCGATG 1 cut(s) 445
BtrI CACGTC 1 cut(s) 108
BtsCI GGATG 1 cut(s) 583
BtsI GCAGTG 1 cut(s) 711
BtsIMutI CAGTG 2 cut(s) 681, 711
BveI ACCTGC 1 cut(s) 658
Cac8I GCNNGC 3 cut(s) 37, 636, 689
CfoI GCGC 4 cut(s) 18, 122, 192, 304
Cfr13I GGNCC 1 cut(s) 445
CseI GACGC 1 cut(s) 39
CviAII CATG 7 cut(s) 181, 403, 750, 865, 888, 956, 1076
DdeI CTNAG 4 cut(s) 431, 470, 591, 717
DpnI GATC 6 cut(s) 150, 254, 337, 711, 837, 1090
DpnII GATC 6 cut(s) 148, 252, 335, 709, 835, 1088
DraI TTTAAA 1 cut(s) 882
EaeI YGGCCR 2 cut(s) 399, 685
Eam1104I CTCTTC 3 cut(s) 323, 480, 551
EarI CTCTTC 3 cut(s) 323, 480, 551
EciI GGCGGA 1 cut(s) 356
Ecl136II GAGCTC 1 cut(s) 469
Eco130I CCWWGG 3 cut(s) 231, 402, 921
Eco24I GRGCYC 1 cut(s) 471
Eco47I GGWCC 1 cut(s) 445
Eco47III AGCGCT 1 cut(s) 191
Eco53kI GAGCTC 1 cut(s) 469
Eco57I CTGAAG 1 cut(s) 650
EcoICRI GAGCTC 1 cut(s) 469
EcoRI GAATTC 3 cut(s) 83, 586, 811
EcoRII CCWGG 3 cut(s) 165, 389, 847
EcoT14I CCWWGG 3 cut(s) 231, 402, 921
EcoT38I GRGCYC 1 cut(s) 471
ErhI CCWWGG 3 cut(s) 231, 402, 921
FaeI CATG 7 cut(s) 184, 406, 753, 868, 891, 959, 1079
FaqI GGGAC 1 cut(s) 37
FatI CATG 7 cut(s) 180, 402, 749, 864, 887, 955, 1075
FauI CCCGC 1 cut(s) 109
FauNDI CATATG 1 cut(s) 1111
Fnu4HI GCNGC 3 cut(s) 300, 305, 1042
FokI GGATG 1 cut(s) 590
FriOI GRGCYC 1 cut(s) 471
Fsp4HI GCNGC 3 cut(s) 300, 305, 1042
FspBI CTAG 1 cut(s) 608
GlaI GCGC 4 cut(s) 17, 121, 191, 303
GluI GCNGC 3 cut(s) 300, 305, 1042
GsuI CTGGAG 1 cut(s) 839
HaeII RGCGCY 2 cut(s) 193, 305
HaeIII GGCC 2 cut(s) 401, 687
HapII CCGG 2 cut(s) 146, 575
HgaI GACGC 1 cut(s) 39
HhaI GCGC 4 cut(s) 18, 122, 192, 304
Hin1II CATG 7 cut(s) 184, 406, 753, 868, 891, 959, 1079
Hin6I GCGC 4 cut(s) 16, 120, 190, 302
HinP1I GCGC 4 cut(s) 16, 120, 190, 302
HincII GTYRAC 2 cut(s) 369, 1023
HindII GTYRAC 2 cut(s) 369, 1023
HindIII AAGCTT 1 cut(s) 970
HinfI GANTC 3 cut(s) 238, 452, 803
HpaII CCGG 2 cut(s) 146, 575
HphI GGTGA 6 cut(s) 151, 181, 247, 733, 1106, 1118
Hpy166II GTNNAC 3 cut(s) 369, 505, 1023
Hpy188I TCNGA 7 cut(s) 247, 438, 457, 625, 1036, 1054, 1086
Hpy188III TCNNGA 4 cut(s) 322, 599, 818, 857
Hpy8I GTNNAC 3 cut(s) 369, 505, 1023
Hpy99I CGWCG 3 cut(s) 16, 128, 263
HpyAV CCTTC 2 cut(s) 346, 508
HpyCH4III ACNGT 2 cut(s) 770, 1130
HpyCH4IV ACGT 4 cut(s) 107, 395, 788, 987
HpyCH4V TGCA 3 cut(s) 35, 307, 1079
HpyF10VI GCNNNNNNNGC 3 cut(s) 13, 313, 613
HpyF3I CTNAG 4 cut(s) 431, 470, 591, 717
HpySE526I ACGT 4 cut(s) 107, 395, 788, 987
Hsp92II CATG 7 cut(s) 184, 406, 753, 868, 891, 959, 1079
HspAI GCGC 4 cut(s) 16, 120, 190, 302
Kzo9I GATC 6 cut(s) 148, 252, 335, 709, 835, 1088
LguI GCTCTTC 2 cut(s) 323, 551
LmnI GCTCC 6 cut(s) 29, 44, 197, 293, 625, 696
Lsp1109I GCAGC 2 cut(s) 291, 1028
LweI GCATC 3 cut(s) 22, 468, 1087
MaeI CTAG 1 cut(s) 608
MaeII ACGT 4 cut(s) 107, 395, 788, 987
MaeIII GTNAC 2 cut(s) 670, 941
MalI GATC 6 cut(s) 150, 254, 337, 711, 837, 1090
MboI GATC 6 cut(s) 148, 252, 335, 709, 835, 1088
MboII GAAGA 6 cut(s) 310, 361, 497, 502, 568, 650
MflI RGATCY 3 cut(s) 148, 709, 1088
MhlI GDGCHC 3 cut(s) 227, 471, 563
MlsI TGGCCA 2 cut(s) 401, 687
MluCI AATT 7 cut(s) 83, 509, 586, 811, 926, 1048, 1132
MluNI TGGCCA 2 cut(s) 401, 687
MmeI TCCRAC 4 cut(s) 315, 603, 809, 863
Mox20I TGGCCA 2 cut(s) 401, 687
MroXI GAANNNNTTC 2 cut(s) 176, 317
MscI TGGCCA 2 cut(s) 401, 687
MseI TTAA 4 cut(s) 219, 881, 893, 1002
MslI CAYNNNNRTG 2 cut(s) 167, 960
Msp20I TGGCCA 2 cut(s) 401, 687
MspI CCGG 2 cut(s) 146, 575
MspR9I CCNGG 5 cut(s) 146, 167, 391, 575, 849
MvaI CCWGG 3 cut(s) 167, 391, 849
MvnI CGCG 4 cut(s) 16, 50, 120, 299
MwoI GCNNNNNNNGC 3 cut(s) 13, 313, 613
NciI CCSGG 2 cut(s) 146, 575
NcoI CCATGG 1 cut(s) 402
NdeI CATATG 1 cut(s) 1111
NdeII GATC 6 cut(s) 148, 252, 335, 709, 835, 1088
NlaIII CATG 7 cut(s) 184, 406, 753, 868, 891, 959, 1079
NlaIV GGNNCC 3 cut(s) 150, 226, 289
NmeAIII GCCGAG 1 cut(s) 490
NmuCI GTSAC 1 cut(s) 670
NspI RCATGY 2 cut(s) 753, 868
OliI CACNNNNGTG 1 cut(s) 167
PciI ACATGT 1 cut(s) 864
PciSI GCTCTTC 2 cut(s) 323, 551
PcsI WCGNNNNNNNCGW 1 cut(s) 1126
PdmI GAANNNNTTC 2 cut(s) 176, 317
PfeI GAWTC 3 cut(s) 238, 452, 803
PfoI TCCNGGA 1 cut(s) 573
PkrI GCNGC 3 cut(s) 301, 306, 1043
PscI ACATGT 1 cut(s) 864
PshAI GACNNNNGTC 1 cut(s) 374
Psp124BI GAGCTC 1 cut(s) 471
Psp6I CCWGG 3 cut(s) 165, 389, 847
PspGI CCWGG 3 cut(s) 165, 389, 847
PspN4I GGNNCC 3 cut(s) 150, 226, 289
PspPI GGNCC 1 cut(s) 445
PsuI RGATCY 3 cut(s) 148, 709, 1088
RseI CAYNNNNRTG 2 cut(s) 167, 960
SacI GAGCTC 1 cut(s) 471
SapI GCTCTTC 2 cut(s) 323, 551
SaqAI TTAA 4 cut(s) 219, 881, 893, 1002
SatI GCNGC 3 cut(s) 300, 305, 1042
Sau3AI GATC 6 cut(s) 148, 252, 335, 709, 835, 1088
Sau96I GGNCC 1 cut(s) 445
ScrFI CCNGG 5 cut(s) 146, 167, 391, 575, 849
SduI GDGCHC 3 cut(s) 227, 471, 563
SfaNI GCATC 3 cut(s) 22, 468, 1087
SfcI CTRYAG 1 cut(s) 19
SinI GGWCC 1 cut(s) 445
SmiI ATTTAAAT 1 cut(s) 882
SmiMI CAYNNNNRTG 2 cut(s) 167, 960
Sse9I AATT 7 cut(s) 83, 509, 586, 811, 926, 1048, 1132
SsiI CCGC 5 cut(s) 48, 102, 228, 299, 341
SspMI CTAG 1 cut(s) 608
SstI GAGCTC 1 cut(s) 471
StyD4I CCNGG 5 cut(s) 144, 165, 389, 573, 847
StyI CCWWGG 3 cut(s) 231, 402, 921
SwaI ATTTAAAT 1 cut(s) 882
TaaI ACNGT 2 cut(s) 770, 1130
TaiI ACGT 4 cut(s) 110, 398, 791, 990
TaqI TCGA 2 cut(s) 483, 1120
TaqII GACCGA 1 cut(s) 386
TasI AATT 7 cut(s) 83, 509, 586, 811, 926, 1048, 1132
TauI GCSGC 1 cut(s) 302
TfiI GAWTC 3 cut(s) 238, 452, 803
Tru1I TTAA 4 cut(s) 219, 881, 893, 1002
Tru9I TTAA 4 cut(s) 219, 881, 893, 1002
TscAI CASTG 2 cut(s) 688, 711
TseFI GTSAC 1 cut(s) 670
TseI GCWGC 2 cut(s) 304, 1041
Tsp45I GTSAC 1 cut(s) 670
TspDTI ATGAA 4 cut(s) 17, 169, 599, 981
TspGWI ACGGA 1 cut(s) 231
TspRI CASTG 2 cut(s) 688, 711
VpaK11BI GGWCC 1 cut(s) 445
XapI RAATTY 5 cut(s) 83, 586, 811, 926, 1048
XceI RCATGY 2 cut(s) 753, 868
XcmI CCANNNNNNNNNTGG 1 cut(s) 1109
XmnI GAANNNNTTC 2 cut(s) 176, 317
XspI CTAG 1 cut(s) 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.